Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq11474 95.1 1e-17 seq1917 93.3 4e-17 seq32334 87.8 2e-15 seq31224 87.8 2e-15 seq28833 87.8 2e-15 seq23344 87.8 2e-15 seq10864 87.8 2e-15 seq6699 87.8 2e-15 seq27274 84.2 2e-14 seq25532 84.2 2e-14 seq26550 80.6 3e-13 seq28878 78.8 9e-13 >seq11474 Length=454 Score = 95.1 bits (104), Expect = 1e-17 Identities = 80/97 (82%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACAC-GAAAGTGGACG 115 |||||| | |||||||||||| ||||||||| |||||| || | | ||| |||| Sbjct 116 ACCAGGGGGTGGCGACTGTTTATCTAAAACACAGGGCTCTGCGAAGTCTGTAAGACGACG 175 Query 116 TATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||| |||||||||||||||||||||||||||| Sbjct 176 TATAGGGCCTGACGCCTGCCCGGTGCCGGAAGGTTAA 212 >seq1917 Length=46836 Score = 93.3 bits (102), Expect = 4e-17 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| ||||||||||| ||| ||||| || Sbjct 9736 GGTCGCAGTAACCAGGCCCGGGCGACTGTTTACTAAAAACACAGGTCTCCGCAAAGTCGT 9677 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 9676 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 9631 >seq32334 Length=72440 Score = 87.8 bits (96), Expect = 2e-15 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||||||||||| ||||||| || | || || Sbjct 61129 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 61070 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||| || |||| |||||||||||| |||| || || Sbjct 61069 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCAA 61032 >seq31224 Length=89923 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 48436 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 48495 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 48496 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 48541 Score = 75.2 bits (82), Expect = 1e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || || || || ||||||||||| |||||||||| ||| ||||| || Sbjct 23423 GGTCGCAGTGACTAGCCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 23482 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||| ||||| || Sbjct 23483 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGAAAGGTCAA 23528 >seq28833 Length=164047 Score = 87.8 bits (96), Expect = 2e-15 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||||||||||| ||||||| || | || || Sbjct 159959 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 159900 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||| || |||| |||||||||||| |||| || || Sbjct 159899 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCAA 159862 Score = 78.8 bits (86), Expect = 9e-13 Identities = 76/98 (78%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||||||||||| ||||||| || | || || Sbjct 16760 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 16819 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||| || |||| | ||||||||| |||| || || Sbjct 16820 GTATAGAGTCTGACACTTGCCCGGTGTTGGAAAGTCAA 16857 Score = 78.8 bits (86), Expect = 9e-13 Identities = 76/98 (78%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | |||||||||||||||||||||| ||||||| || | || | Sbjct 23167 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACATGACTCTGCTAAGTGGTAACACAAT 23226 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||| || |||| |||||||||||| |||| || || Sbjct 23227 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCAA 23264 >seq23344 Length=366299 Score = 87.8 bits (96), Expect = 2e-15 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||||||||||| ||||||| || | || || Sbjct 172148 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 172207 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||| || |||| |||||||||||| |||| || || Sbjct 172208 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCAA 172245 Score = 73.4 bits (80), Expect = 4e-11 Identities = 75/98 (77%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||| ||||||| ||||||| || | || || Sbjct 214233 ATACCAGGGGGTAGCGACTGTTTATTAACAACACAGGACTCTGCTAAGTGGTAACACGAT 214174 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| || || |||| ||||| |||||| |||| || || Sbjct 214173 GTACAGAGTCTGACACCTGCTCGGTGCTGGAAAGTCAA 214136 >seq10864 Length=17974 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 6039 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 6098 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 6099 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 6144 >seq6699 Length=24755 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 3659 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 3600 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 3599 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 3554 >seq27274 Length=221448 Score = 84.2 bits (92), Expect = 2e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 13266 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 13325 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| ||||||||||| |||||||||||| || Sbjct 13326 AAGACCATGTATGGGGGTGGACGCCTGCCCAGTGCCGGAAGGTCAA 13371 >seq25532 Length=6063 Score = 84.2 bits (92), Expect = 2e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||| || Sbjct 5352 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCATAAAGTCGT 5293 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||||||| |||||||||||| |||||||||||| || Sbjct 5292 AAGACCATGTATAGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 5247 >seq26550 Length=262985 Score = 80.6 bits (88), Expect = 3e-13 Identities = 79/102 (77%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 48 GTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAA 107 |||| || |||||||| ||||| |||| |||||||||| ||| ||||| || | Sbjct 222560 GTCGCAGTGACCAGGCCCGGGCGACCATTTACCAAAAACACAGGTCTCCGCAAAGTCGTA 222501 Query 108 AGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 || | |||||||| |||||||||||| |||||||||||| Sbjct 222500 AGACCATGTATAGGGGCTGACGCCTGCCCAGTGCCGGAAGGT 222459 >seq28878 Length=163380 Score = 78.8 bits (86), Expect = 9e-13 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || || ||||| ||||||||||| |||||||||| ||| |||| || Sbjct 9455 GGTCGCAGTGACAAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCACAAAGTCGT 9396 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 9395 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 9350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476648815511