Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq27221 352 5e-95 seq27597 300 2e-79 seq8954 300 2e-79 seq28844 297 3e-78 seq24566 219 7e-55 seq4241 150 3e-34 seq28033 131 3e-28 seq29099 114 2e-23 seq14788 104 4e-20 >seq27221 Length=2939 Score = 352 bits (390), Expect = 5e-95 Identities = 233/257 (91%), Gaps = 1/257 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1542 ACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1601 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 1602 CCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGCG 1660 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 |||| ||| || ||||||||||||||||||||||||||||||||||| |||||| Sbjct 1661 ACCAGCCAAAGCTAGCCTGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTAA 1720 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 1721 GCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCTGAAAAATCAAGAA 1780 Query 242 AGAGCTATCAATCTGTC 258 |||||| |||||||||| Sbjct 1781 AGAGCTCTCAATCTGTC 1797 >seq27597 Length=212756 Score = 300 bits (332), Expect = 2e-79 Identities = 226/261 (87%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 204136 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 204195 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 204196 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 204253 Query 120 CCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 |||| | ||| || |||| |||||||| | ||||||||||||||| ||||| Sbjct 204254 CCACGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 204313 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 204314 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 204373 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 204374 AGAAAGAGCTCTCAGTCTGTC 204394 >seq8954 Length=20235 Score = 300 bits (332), Expect = 2e-79 Identities = 226/261 (87%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15824 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 15883 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 15884 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 15941 Query 120 CCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 |||| | ||| || |||| |||||||| | ||||||||||||||| ||||| Sbjct 15942 CCACGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 16001 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 16002 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 16061 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 16062 AGAAAGAGCTCTCAGTCTGTC 16082 >seq28844 Length=837144 Score = 297 bits (328), Expect = 3e-78 Identities = 225/261 (86%), Gaps = 6/261 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 725399 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 725340 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 725339 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 725282 Query 120 CCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 |||| | ||| || | || |||||||| |||||||||||||||| ||||| Sbjct 725281 CCACGGAGGGATACCTCCGCATAGTTAGTTAGCAGGCAAAGGTCTCGTTCGTTAACGGAA 725222 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 725221 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 725162 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 725161 AGAAAGAGCTCTCAGTCTGTC 725141 >seq24566 Length=356521 Score = 219 bits (242), Expect = 7e-55 Identities = 177/208 (85%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 55 TCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAG 112 ||| |||| |||||||||||||||||| |||||| |||| | |||||||||||||| Sbjct 273395 TCAAAGACTCGTTATTGCCTCAAACTTC-ATTGGCCT-AAGCGGCCATAGTCCCTCTAAG 273338 Query 113 AAGCCAGCCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTT 170 |||| ||||| | |||| || |||| |||||||| | |||||||||||||| Sbjct 273337 AAGCTGGCCACGGAGGGATAGCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTT 273278 Query 171 ATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 273277 AACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 273218 Query 231 AGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||| ||| |||||| Sbjct 273217 AGAATCAAGAAAGAGCTCTCAGTCTGTC 273190 >seq4241 Length=643 Score = 150 bits (166), Expect = 3e-34 Identities = 110/124 (89%), Gaps = 4/124 (3%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 517 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 576 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| ||||| |||| | |||||||||||||||||| | Sbjct 577 CCTGTTATTGCCTCAAACTTCC-TTGGC-CTAAGCGGCCATAGTCCCTCTAAGAAGCTGG 634 Query 120 CCAC 123 |||| Sbjct 635 CCAC 638 >seq28033 Length=192694 Score = 131 bits (144), Expect = 3e-28 Identities = 92/103 (89%), Gaps = 4/103 (4%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 91697 TCAGTGTAGCACGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTATTATTGCCTC 91638 Query 76 AAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGC 116 |||||||| | | || |||| | ||||||||||||| |||| Sbjct 91637 AAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAATAAGC 91597 >seq29099 Length=155301 Score = 114 bits (126), Expect = 2e-23 Identities = 86/101 (85%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||| | |||| ||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 70547 TCAGTGTACCACGCGAGCGACCCAGAACATCTAAGCGCATCACAGACCTGTTATTGCCTC 70606 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116 |||||||| | | || | | ||||||||| |||||||| Sbjct 70607 AAACTTCCTTGGCCTAAGTGGCCATAGTCCCTTTAAGAAGC 70647 >seq14788 Length=450623 Score = 104 bits (114), Expect = 4e-20 Identities = 80/93 (86%), Gaps = 4/93 (4%) Strand=Plus/Minus Query 26 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCAT 85 ||||| || ||| |||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 178853 GCGCGAGCAGCCAAGAACATCTAAGGGCATCACAGACCTGTTATTACCTCAAACTTCCTT 178794 Query 86 TGGCTGGAAGC--CAATAGTCCCTCTAAGAAGC 116 | || |||| |||||||||| |||||||| Sbjct 178793 AGCCT--AAGCGGTAATAGTCCCTTTAAGAAGC 178763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796547349411