Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq30178 129 5e-28 seq20223 123 2e-26 seq27274 122 7e-26 seq31224 118 9e-25 seq30757 118 9e-25 seq28878 118 9e-25 seq27099 118 9e-25 seq23344 118 9e-25 seq30456 109 5e-22 seq1917 102 7e-20 seq19162 98.7 8e-19 seq6699 96.9 3e-18 seq28778 75.2 9e-12 seq6754 75.2 9e-12 >seq30178 Length=117579 Score = 129 bits (142), Expect = 5e-28 Identities = 127/163 (78%), Gaps = 6/163 (4%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACAC---TTTCTGGGATTAGCTCCCCCTCG 58 |||||||||| || ||||||| ||| | ||| ||| ||| |||||||| |||||| Sbjct 4407 CGAGTTGCAGCCTGCAATCCGAACTGAG---CACGGGTTTTTGGAATTAGCTCACCCTCG 4463 Query 59 CGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGC 118 |||| | ||| |||| ||| |||||||| ||||||| |||| |||||||| Sbjct 4464 CGGGATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGG 4523 Query 119 CATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||| ||||||||||||||| ||||||||||||| || |||| Sbjct 4524 CATGATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 4566 Score = 109 bits (120), Expect = 5e-22 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 37 TTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGT 96 || ||| ||||||| |||||||||| | ||| |||| ||| |||||||| |||| Sbjct 15101 TTTTGGAGTTAGCTCACCCTCGCGGGATCGCGACCCTTTGTCCCGGCCATTGTAGCACGT 15160 Query 97 GTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 ||| |||| |||||||| ||||| ||||||||||||||| ||||||||||||| || Sbjct 15161 GTGTCGCCCAGGGCATAAGGGGCATGATGACTTGACGTCATCCTCACCTTCCTCCGGCTT 15220 Query 157 GTCAC 161 |||| Sbjct 15221 ATCAC 15225 >seq20223 Length=10564 Score = 123 bits (136), Expect = 2e-26 Identities = 124/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 3651 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 3593 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 3592 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 3533 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 3532 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 3493 >seq27274 Length=221448 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | | ||| ||| ||||||| ||||||||| Sbjct 110230 CGAGTTGCAGTCTGCAATCCGAACTGAGGACGAGTTTTTGGAGTTAGCTCACCCTCGCGG 110289 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 110290 GATTGCGACCCTTTGTCCCGGCCATTGTAGAACGTGTGTCGCCCAGGGCATAAGGGGCAT 110349 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||| | || |||| Sbjct 110350 GATGACTTGACGTCATCCTCACCTTCCTCCCGCTTATCAC 110389 Score = 105 bits (116), Expect = 6e-21 Identities = 121/160 (76%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 3 GAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||| |||||||| | ||| | || |||| | | ||||||| ||||||||| Sbjct 28998 GAGTTGCAGCCTACAATCTGAACTGAGGACGGGATTTCGGAG-TTAGCTCACCCTCGCGG 29056 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | | | |||| ||| |||||||| ||| ||| |||| |||||||| ||| Sbjct 29057 GATCGTGACCCTTTGTCCCGGCCATTGTAGCACGCGTGTCGCCCAGGGCATAAGGGGCAT 29116 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| |||||||||| || || |||| Sbjct 29117 GATGACTTGACGTCATCCTCACCTTCCTCTGGCTTATCAC 29156 >seq31224 Length=89923 Score = 118 bits (130), Expect = 9e-25 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 76193 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 76252 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 76253 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 76312 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||| ||||||| ||||||||||||| || |||| Sbjct 76313 GATGACTTGATGTCATCCTCACCTTCCTCCGGCTTATCAC 76352 Score = 105 bits (116), Expect = 6e-21 Identities = 121/160 (76%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 3 GAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||| ||| ||||||| || ||| | ||| ||| | | ||||||| || |||||| Sbjct 43969 GAGTTACAGCCTACAATTCGAACTGAGGATGGGTTTTTAGAG-TTAGCTCACCGTCGCGG 43911 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 43910 GATCGCGACCCTTTGTCCCAGCCATTGTAACACGTGTGTCGCCCAGGGCATAAGGGGCAT 43851 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||| | || |||| Sbjct 43850 GATGACTTGACGTCATCCTCACCTTCCTCCAGCTTATCAC 43811 >seq30757 Length=100318 Score = 118 bits (130), Expect = 9e-25 Identities = 123/160 (77%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||| | |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 12693 CGAGTTGCAAAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCACCTTACAG 12635 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 12634 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 12575 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 12574 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 12535 >seq28878 Length=163380 Score = 118 bits (130), Expect = 9e-25 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 4648 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 4589 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| ||||||||| ||||||| ||| |||||||| ||| Sbjct 4588 GATCGCGACCCTTTGTCCCGACCATTGTAGCACGTGTGTCACCCAGGGCATAAGGGGCAT 4529 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || |||||||||||||| ||||||||||||| || |||| Sbjct 4528 GATGACTTGACGTCATCTTCACCTTCCTCCGGCTTATCAC 4489 Score = 118 bits (130), Expect = 9e-25 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 13849 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 13908 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 13909 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 13968 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||| | || |||| Sbjct 13969 GATGACTTGACGTCATCCTCACCTTCCTCCAGCTTATCAC 14008 >seq27099 Length=3058 Score = 118 bits (130), Expect = 9e-25 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 1207 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 1148 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||| | |||| |||||||||||| Sbjct 1147 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGCGTCGCCCAGGGCATAAGGGCCAT 1088 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||| | || |||| Sbjct 1087 GATGACTTGACGTCATCCTCACCTTCCTCCAGCTTATCAC 1048 >seq23344 Length=366299 Score = 118 bits (130), Expect = 9e-25 Identities = 123/160 (77%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| | |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 141707 CGAGTTGCAGTCAACAATCCGAACTGAGGCAATCTTTCCGG-ATTTGCTCCGCCTTACAG 141649 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| | || | |||||||| ||||||| |||| |||||||||||||| Sbjct 141648 CCTTGCTTCCCATTCTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 141589 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 141588 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTGTATCAC 141549 Score = 104 bits (114), Expect = 2e-20 Identities = 119/159 (75%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| ||||| | ||| | | ||||| || ||| |||| ||| | | Sbjct 247196 CGAGTTGCAGAGAACAATATGAACTGAGGCAATCTTTCCGG-ATTCGCTCTGCCTTACAG 247254 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| ||| |||||||||||||| Sbjct 247255 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCTAGCCCATAAGGGCCAT 247314 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCA 160 | |||||||||||||||||||||||||||| || | ||| Sbjct 247315 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCA 247353 >seq30456 Length=110563 Score = 109 bits (120), Expect = 5e-22 Identities = 121/160 (76%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||| ||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 96053 CGATTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 95995 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| ||| |||||||||||||| Sbjct 95994 CCTTGCTTCCCATTGTAATTTCCATTGTAGCACGTGTGTGGCCTAGCCCATAAGGGCCAT 95935 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | ||||||||||||||||||||||||||| || | |||| Sbjct 95934 GCGGACTTGACGTCATCCCCACCTTCCTCAAGTATATCAC 95895 >seq1917 Length=46836 Score = 102 bits (112), Expect = 7e-20 Identities = 122/162 (75%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||| || ||||| | ||| | ||| ||| ||| ||||||| |||||||| Sbjct 14258 CGAGTTGCAGCCTGCAATCTGAACTGAGGATGGGTTTT-TGGAGTTAGCTCACCCTCGCG 14316 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTG-TATGACGTGTGAAGCCCTACCCATAAGGGCC 119 || | ||| |||| ||| |||||| || |||| || ||| |||||||| | Sbjct 14317 GGATCGCGACCCTTTGTCCCGGCCATTGGTAGCACGTTTGTCACCCAGGGCATAAGGGGC 14376 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||| ||||||||||||||| ||||||||| ||| || |||| Sbjct 14377 ATGATGACTTGACGTCATCCTCACCTTCCTTCGGCTTATCAC 14418 >seq19162 Length=351 Score = 98.7 bits (108), Expect = 8e-19 Identities = 85/104 (82%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 59 CGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGC 118 ||| || ||| ||| |||| |||||||| ||||||| ||||| ||| ||||||| Sbjct 351 CGGTTTCGCGTCCCACTGTCACCGCCATTGTAGCACGTGTGTAGCCCATCCCGTAAGGGC 292 Query 119 CATGAGGACTTGACGTCATCCCCACCTTCCTC-CGGTTTGTCAC 161 ||||||||||||||||||||| |||||||||| ||| || |||| Sbjct 291 CATGAGGACTTGACGTCATCCACACCTTCCTCGCGGCTTATCAC 248 >seq6699 Length=24755 Score = 96.9 bits (106), Expect = 3e-18 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95 ||| ||| ||||||| |||||| ||| | ||| |||| ||| |||||||| ||| Sbjct 8173 TTTTTGGAGTTAGCTCGCCCTCGTGGGATCGCGACCCTTTGTCCCAGCCATTGTAGCACG 8232 Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155 |||| |||| |||||||| ||||| ||||| ||||||||| ||||||||||| | | Sbjct 8233 TGTGTCGCCCAGGGCATAAGGGGCATGATGACTTCACGTCATCCTCACCTTCCTCCAGCT 8292 Query 156 TGTCAC 161 | |||| Sbjct 8293 TATCAC 8298 >seq28778 Length=166433 Score = 75.2 bits (82), Expect = 9e-12 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 111 ATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||| |||||||||||||||||||||||||||| || | |||| Sbjct 33177 ATAAGGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 33227 >seq6754 Length=24528 Score = 75.2 bits (82), Expect = 9e-12 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 111 ATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||| |||||||||||||||||||||||||||| || | |||| Sbjct 6534 ATAAGGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 6484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415868094070