Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq6699 87.8 1e-15 seq1917 80.6 2e-13 seq27274 73.4 3e-11 >seq6699 Length=24755 Score = 87.8 bits (96), Expect = 1e-15 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| |||||||||| || || |||||||||| | || Sbjct 2962 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGA 3021 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||||| | || | ||| ||| |||||| | ||| |||| ||||||| Sbjct 3022 CTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 3079 >seq1917 Length=46836 Score = 80.6 bits (88), Expect = 2e-13 Identities = 91/121 (75%), Gaps = 6/121 (5%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCG---GATCACTATGAC 57 || |||||||||||||||||| |||||||||| || | ||||| |||||||| | | Sbjct 9015 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTC---GGCACCGTCAGATCACTAAGGC 9071 Query 58 CTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117 | |||||| |||||| | || | ||| ||| |||||| | ||| ||| |||||| Sbjct 9072 CGACTTTCGTTCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCTTTTGCAC 9131 Query 118 T 118 | Sbjct 9132 T 9132 >seq27274 Length=221448 Score = 73.4 bits (80), Expect = 3e-11 Identities = 87/118 (74%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| |||||||||| || ||| || |||||| | || Sbjct 13966 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCATCGCATCACTGAGGCCGA 13907 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||| | |||||| | || | ||| ||| |||||| | ||| || | ||||||| Sbjct 13906 CTTTAGTCCCTGCTCGACGGGTGGATCTTGCAGTCAAGCTCCCTTCTGTCTTTGCACT 13849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351891987700