Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq27221 522 5e-146 seq27597 313 5e-83 seq8954 313 5e-83 seq28844 309 6e-82 seq4241 309 6e-82 seq29099 268 2e-69 seq28033 259 9e-67 seq14788 158 2e-36 seq24566 75.2 2e-11 >seq27221 Length=2939 Score = 522 bits (578), Expect = 5e-146 Identities = 301/309 (97%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 1706 GAACGAGACCTTAACCTGCTAAATAGCCAGGCTAGCTTTGGCTGGTCGCCGGCTTCTTAG 1647 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1646 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 1587 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1586 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTATTCACCTTGGCCG 1527 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1526 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 1467 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 1466 CTCTTCAACGAGGAATGCCTAGTAAGCGCATGTCATCAGCATGCGTTGATTACGTCCCTG 1407 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 1406 CCCTTTGTA 1398 >seq27597 Length=212756 Score = 313 bits (346), Expect = 5e-83 Identities = 261/313 (83%), Gaps = 6/313 (2%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC-GCTTTGGCGG-GTCGCCGGCTTCTT 77 || |||||||| | |||||||| |||| | || | | | | || ||| ||||||| Sbjct 204303 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTATCCCTCCGTGGCCAGCTTCTT 204244 Query 78 AGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 ||||||||||| | ||| | ||| | ||||||||||||||||||||||||||||||||| Sbjct 204243 AGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 204185 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 ||||||||||||||||||||||||||||||||||| | |||||||| || ||||| Sbjct 204184 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTG 204125 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 |||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||||||| Sbjct 204124 GCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATT 204066 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||| Sbjct 204065 GTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTC 204006 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 204005 CCTGCCCTTTGTA 203993 >seq8954 Length=20235 Score = 313 bits (346), Expect = 5e-83 Identities = 261/313 (83%), Gaps = 6/313 (2%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC-GCTTTGGCGG-GTCGCCGGCTTCTT 77 || |||||||| | |||||||| |||| | || | | | | || ||| ||||||| Sbjct 15991 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTATCCCTCCGTGGCCAGCTTCTT 15932 Query 78 AGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 ||||||||||| | ||| | ||| | ||||||||||||||||||||||||||||||||| Sbjct 15931 AGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 15873 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 ||||||||||||||||||||||||||||||||||| | |||||||| || ||||| Sbjct 15872 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTG 15813 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 |||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||||||| Sbjct 15812 GCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATT 15754 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||| Sbjct 15753 GTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTC 15694 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 15693 CCTGCCCTTTGTA 15681 >seq28844 Length=837144 Score = 309 bits (342), Expect = 6e-82 Identities = 231/267 (87%), Gaps = 4/267 (1%) Strand=Plus/Plus Query 64 GTCGCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAAC 121 || ||| |||||||||||||||||| | ||| | ||| | ||||||||||||||||||| Sbjct 725278 GTGGCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAAC 725336 Query 122 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACG 181 ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 725337 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACG 725396 Query 182 AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGAT 241 ||| || ||||||||| ||| | |||||||||| | ||| | ||||| ||||||| Sbjct 725397 AGTCTATAGCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGAT 725455 Query 242 AGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCAC 301 ||| |||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| | Sbjct 725456 AGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTC 725515 Query 302 GCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||| ||||||||||||||||||| Sbjct 725516 GCGTTGACTACGTCCCTGCCCTTTGTA 725542 Score = 154 bits (170), Expect = 3e-35 Identities = 111/127 (87%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 202 AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCT 261 ||| | |||||||||| | ||| | ||||| |||||||||| |||||||||| ||| | Sbjct 726520 AGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGT 726578 Query 262 CTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCC 321 |||||||||||||| ||||||||||||| ||||||||| |||||||| |||||||||||| Sbjct 726579 CTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCC 726638 Query 322 CTTTGTA 328 ||||||| Sbjct 726639 CTTTGTA 726645 >seq4241 Length=643 Score = 309 bits (342), Expect = 6e-82 Identities = 231/267 (87%), Gaps = 4/267 (1%) Strand=Plus/Minus Query 64 GTCGCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAAC 121 || ||| |||||||||||||||||| | ||| | ||| | ||||||||||||||||||| Sbjct 638 GTGGCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAAC 580 Query 122 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACG 181 ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 579 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACG 520 Query 182 AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGAT 241 ||| || ||||||||| ||| | |||||||||| | ||| | ||||| ||||||| Sbjct 519 AGTCTATAGCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGAT 461 Query 242 AGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCAC 301 ||| |||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| | Sbjct 460 AGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTC 401 Query 302 GCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||| ||||||||||||||||||| Sbjct 400 GCGTTGACTACGTCCCTGCCCTTTGTA 374 >seq29099 Length=155301 Score = 268 bits (296), Expect = 2e-69 Identities = 218/262 (83%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 68 CCGGCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTC 126 || |||||||| ||||||||| | | | || | | |||||||||||||||||||||||| Sbjct 70650 CCAGCTTCTTAAAGGGACTATGGCCACTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTC 70591 Query 127 TGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTC 186 |||||||| ||||||||||||||| ||| |||| | |||||||| | | |||||||| Sbjct 70590 TGTGATGCGCTTAGATGTTCTGGGTCGCTCGCGTGGTACACTGATATATTCAACGAGTCT 70531 Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246 || ||||||||| | | | |||||||||| | ||| | ||||| |||||||||| | Sbjct 70530 ATAGCCTTGGCCGACATGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATC 70472 Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 ||||||||| ||| |||||||| |||||| ||||||||||||| ||||||||| | |||| Sbjct 70471 ATTGCAATTGTTGGTCTTCAACAAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCACGTT 70412 Query 307 GATTACGTCCCTGCCCTTTGTA 328 || ||||||||||||||||||| Sbjct 70411 GACTACGTCCCTGCCCTTTGTA 70390 >seq28033 Length=192694 Score = 259 bits (286), Expect = 9e-67 Identities = 218/263 (83%), Gaps = 5/263 (2%) Strand=Plus/Plus Query 68 CCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 || |||| ||||||||||||| | ||| | ||| | |||||||||||||||||| |||| Sbjct 91594 CCAGCTTATTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAATAGGT 91652 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 |||||||||||||||||||||||||||||||||| |||||||||| | | ||||| | Sbjct 91653 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGTGCTACACTGATGTATTCTACGAGCT 91712 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 || |||||||| ||| | ||||||||| | ||| | ||||| |||||||||| Sbjct 91713 -ATAGCCTTGGCCAACAGGGCCAGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGAT 91770 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||||| ||| ||||||||||||||| |||||||||| | ||||||||| ||| | Sbjct 91771 CATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCACAAGTCATCAGCTCGCAT 91830 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||| |||||| |||||||||||| Sbjct 91831 TGACTACGTCTCTGCCCTTTGTA 91853 >seq14788 Length=450623 Score = 158 bits (174), Expect = 2e-36 Identities = 187/263 (71%), Gaps = 49/263 (19%) Strand=Plus/Plus Query 68 CCGGCTTCTTAGAGGGACTAT--CGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 || |||||||| ||||||||| | ||| | || | |||||||||||| |||||||||| Sbjct 178760 CCAGCTTCTTAAAGGGACTATTACCGCTTAGGCTAA-GGAAGTTTGAGGTAATAACAGGT 178818 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 |||||||||||||||||||||| ||| || ||||| | Sbjct 178819 CTGTGATGCCCTTAGATGTTCTTGGCTGCTCGCGCCC----------------------- 178855 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 |||||||||| | ||| | ||||| |||||||||| Sbjct 178856 ----------------------GGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGAT 178892 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| ||||| Sbjct 178893 CATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGT 178952 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||| || |||||| ||||||||| Sbjct 178953 TGACTATGTCCCTACCCTTTGTA 178975 >seq24566 Length=356521 Score = 75.2 bits (82), Expect = 2e-11 Identities = 89/116 (77%), Gaps = 5/116 (4%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC-GCTTTGGCGG-GTCGCCGGCTTCTT 77 || |||||||| | |||||||| |||| | || ||| | | || ||| ||||||| Sbjct 273281 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGCTATCCCTCCGTGGCCAGCTTCTT 273340 Query 78 AGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 ||||||||||| | ||| | ||| ||| ||||||||||||||||| |||| ||| Sbjct 273341 AGAGGGACTATGGCCGCTTAGGCCAATG-AAGTTTGAGGCAATAACGAGTCTTTGA 273395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946889971968