Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq6699 138 2e-30 seq25546 132 9e-29 seq31224 129 1e-27 seq26550 125 1e-26 seq28878 120 6e-25 seq27274 120 6e-25 seq23344 114 2e-23 seq1917 109 1e-21 seq26183 102 1e-19 seq32334 77.0 6e-12 seq28833 77.0 6e-12 >seq6699 Length=24755 Score = 138 bits (152), Expect = 2e-30 Identities = 179/243 (74%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||||||||||| ||| | ||| |||| Sbjct 5412 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGACGTAGTAAGCGACGAAATGCTTCGGG 5353 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| | Sbjct 5352 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 5300 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 5299 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 5243 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 5242 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 5183 Query 249 CCT 251 ||| Sbjct 5182 CCT 5180 >seq25546 Length=330787 Score = 132 bits (146), Expect = 9e-29 Identities = 178/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 245309 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 245368 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| | Sbjct 245369 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 245421 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 245422 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 245478 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 245479 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 245538 Query 249 CCT 251 ||| Sbjct 245539 CCT 245541 >seq31224 Length=89923 Score = 129 bits (142), Expect = 1e-27 Identities = 181/248 (73%), Gaps = 17/248 (7%) Strand=Plus/Plus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAA---GCT 64 ||||||||| ||| ||| | || ||| ||||| ||||||| ||||| | ||| Sbjct 21684 ATGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAA---GCGATGAAATGCT 21740 Query 65 GCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTT 124 |||||||| | ||| | | | |||||| ||||| |||||| | |||| || Sbjct 21741 TCGGGGAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGATCAACC------TT 21793 Query 125 TGGGTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATC 183 | | | ||| |||||||| ||| || | |||| || ||| |||||||||||||||| Sbjct 21794 TCGAAC--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATC 21850 Query 184 TAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGG 243 | |||||| ||||||||||| ||| | ||||||| ||||| ||||||||||||||| Sbjct 21851 TTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGG 21910 Query 244 ATGAGCCT 251 | ||||| Sbjct 21911 AGCAGCCT 21918 Score = 123 bits (136), Expect = 5e-26 Identities = 176/243 (72%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 46725 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 46784 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| | Sbjct 46785 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 46837 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 46838 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 46894 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | |||||| ||||| ||||||||||||||| || Sbjct 46895 AGCCAGAGGAAAAGAAAGCAAAAGTGATTCCTGCAGTAGCAGCGAGCGAAATGGGAGCAG 46954 Query 249 CCT 251 ||| Sbjct 46955 CCT 46957 >seq26550 Length=262985 Score = 125 bits (138), Expect = 1e-26 Identities = 172/236 (73%), Gaps = 11/236 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 224295 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 224236 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| | Sbjct 224235 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 224183 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| || |||||||||||||| ||| Sbjct 224182 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGTCAACCTGGTGAACTGAAACATCTTAGT 224126 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| Sbjct 224125 AGCCAAAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGA 224070 >seq28878 Length=163380 Score = 120 bits (132), Expect = 6e-25 Identities = 175/243 (72%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| || || ||| ||| | |||||| | ||| | ||| |||| Sbjct 11179 GGTGGATACCTAGGCACCTAGAGACGAGGAATGGTGTAGTAAGTGACGAAATGCTTCGGG 11120 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | ||| | ||||| || ||| || |||| ||| | Sbjct 11119 GAGTT-GAAAATAAGCGTAGATATGGAGATTCCCCAATAGGTCAACC------TTTCGAA 11067 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 11066 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 11010 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 11009 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 10950 Query 249 CCT 251 ||| Sbjct 10949 CCT 10947 >seq27274 Length=221448 Score = 120 bits (132), Expect = 6e-25 Identities = 175/243 (72%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 8761 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 8820 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| | Sbjct 8821 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 8873 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 8874 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 8930 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | |||||| ||||| | ||||||||||||| || Sbjct 8931 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCTGTAGTAGCAGAGAGCGAAATGGGAGCAG 8990 Query 249 CCT 251 ||| Sbjct 8991 CCT 8993 Score = 118 bits (130), Expect = 2e-24 Identities = 176/245 (72%), Gaps = 11/245 (4%) Strand=Plus/Plus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 ||||||||| ||| ||| | || ||| ||||| ||||||| | ||| | ||| || Sbjct 11528 ATGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGTGACGAAATGCTTCG 11587 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127 |||||| | ||| | | | |||||| | ||| |||||| || |||| ||| Sbjct 11588 GGGAGTT-GAAAATAAGCATAGATCCGGATATTCCCGAATAGGTCAACC------TTTCA 11640 Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186 | | || ||||||| ||| || | |||| || ||| ||| ||||||||||||| | Sbjct 11641 AAC--TACA-GCTGAATCCATGGGCAGGCAAGAGACAACTTGGCAAACTGAAACATCTTA 11697 Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246 |||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| Sbjct 11698 GTAGTCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGC 11757 Query 247 AGCCT 251 ||||| Sbjct 11758 AGCCT 11762 >seq23344 Length=366299 Score = 114 bits (126), Expect = 2e-23 Identities = 159/218 (73%), Gaps = 11/218 (5%) Strand=Plus/Minus Query 35 GATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGGAGTGAGCAAACACACTTTGATCCG 94 || ||||| ||||||| ||| | ||| |||||||| | ||| | | | ||||| Sbjct 68080 GAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGAGTT-GAAAATAAGCGTATATCCG 68022 Query 95 CAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACATAGGTAT 154 ||||| |||||| || |||| |||| | ||| ||| |||| ||| || | Sbjct 68021 GAGATTACCGAATAGGTCAACCT-----TTTGA---ACTGC-TGCGGAATCCATGGGCAG 67971 Query 155 GCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGA 213 |||| || ||| ||||||||||||||||| |||||| ||||||||||| ||| | Sbjct 67970 GCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGC 67911 Query 214 GATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 ||||||| ||||| |||||||||||||||| ||||| Sbjct 67910 GATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCT 67873 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 170286 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 170345 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 170346 GGCGAGCGAGAGCGGAT 170362 >seq1917 Length=46836 Score = 109 bits (120), Expect = 1e-21 Identities = 99/122 (81%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 131 ATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTA 189 ||||| |||||||| ||| || | |||| || ||| || |||||||||||||| |||| Sbjct 11473 ATTGC-TGCTGAATCCATGGGCAGGCAAGAGATAACCTGGTGAACTGAAACATCTTAGTA 11415 Query 190 GCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGC 249 || ||||||||||| ||| | |||||||| ||||| |||||||||||||||| ||| Sbjct 11414 GCCAGAGGAAAAGAAAACAAAAGCGATTCCCATAGTAGCGGCGAGCGAAATGGGAGCAGC 11355 Query 250 CT 251 || Sbjct 11354 CT 11353 Score = 80.6 bits (88), Expect = 5e-13 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 175 TGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAG 234 |||||||||| |||||| ||||||||||| ||| | ||||||| ||||| |||||| Sbjct 11317 TGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAG 11258 Query 235 CGAAATGGGATGAGCCT 251 |||||||||| ||||| Sbjct 11257 CGAAATGGGAGCAGCCT 11241 >seq26183 Length=286087 Score = 102 bits (112), Expect = 1e-19 Identities = 169/238 (71%), Gaps = 12/238 (5%) Strand=Plus/Plus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 ||||||||| ||| ||| | || ||| ||||| | ||||| ||| | ||| || Sbjct 245118 ATGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGC-TAGTAAGCGACGAAATGCTTCG 245176 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127 |||||| | ||| | | ||| || ||||| ||||| || |||| ||| | Sbjct 245177 GGGAGTT-GAAAATAAGTGTAGATTCGGAGATTCTCGAATAGGTTAACC------TTTCG 245229 Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| | Sbjct 245230 AAC--TGC-TGCTGAATCCATGGGCAAGCAAGAGACAACCTGGCGAACTGAAACATCTTA 245286 Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 ||||| ||||||||||| ||| ||||||| ||||| |||||||||||| ||| Sbjct 245287 GTAGCCAGAGGAAAAGAAAGCAAAAACGATTCCCGTAGTAGCGGCGAGCGAAATAGGA 245344 >seq32334 Length=72440 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 62991 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 62932 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 62931 GGCGAGCGAGAGCGGAT 62915 >seq28833 Length=164047 Score = 77.0 bits (84), Expect = 6e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 161 CGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCC 220 ||||| |||||||||||||||| ||||||| || || ||||||||||||||| || Sbjct 21297 CGAACTTAGCGAACTGAAACATCTGAGTAGCTAAAGCAAGGGAAATCAACCGAGATCCCA 21356 Query 221 AAAGTAGTGGCGAGCGAAATGGGAT 245 ||||| ||||||||| | |||| Sbjct 21357 TTAGTAGCGGCGAGCGAGAGCGGAT 21381 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 161819 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 161760 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 161759 GGCGAGCGAGAGCGGAT 161743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918099398496