Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq32472 286 6e-75 seq28844 114 2e-23 seq26839 105 1e-20 seq8954 105 1e-20 seq26662 102 1e-19 seq13455 102 1e-19 seq2450 102 1e-19 >seq32472 Length=954 Score = 286 bits (316), Expect = 6e-75 Identities = 234/279 (84%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| | Sbjct 880 GTACGAGAGGAACCGCGGT-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACCAGGCATT 823 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 822 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 763 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTCGGCCCCGAA 179 ||||||||||||| | ||||||| ||||||||||||||||| ||| ||||| ||| Sbjct 762 GAACGGGGTGATTTCCGCCTGCAC----CAGTCGGATACGAATAGGCCTTTGGCCCAGAA 707 Query 180 CCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGC 239 ||||| ||| |||| || | | | ||| ||| | || ||| || | ||||| Sbjct 706 CCTTACCAGATCGGCGTTGGTGGCCTCATTGAAATTGGGGTCACT-AGCCGGTGTATTGC 648 Query 240 AATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||| || |||||||| | ||||||||||||||||| Sbjct 647 AATTGTACAGTGCGCAGGATTGAATCCTTTGCAGACGAC 609 >seq28844 Length=837144 Score = 114 bits (126), Expect = 2e-23 Identities = 102/125 (82%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 717709 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 717766 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| ||||||||||||||||||||||||| || | Sbjct 717767 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCAGGCTA 717826 Query 121 GAACG 125 ||||| Sbjct 717827 GAACG 717831 >seq26839 Length=941352 Score = 105 bits (116), Expect = 1e-20 Identities = 100/125 (80%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 544561 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 544618 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 544619 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 544678 Query 121 GAACG 125 || || Sbjct 544679 GAGCG 544683 >seq8954 Length=20235 Score = 105 bits (116), Expect = 1e-20 Identities = 100/125 (80%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 1847 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1790 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 1789 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 1730 Query 121 GAACG 125 || || Sbjct 1729 GAGCG 1725 Score = 105 bits (116), Expect = 1e-20 Identities = 100/125 (80%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 11870 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 11813 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 11812 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 11753 Query 121 GAACG 125 || || Sbjct 11752 GAGCG 11748 >seq26662 Length=254169 Score = 102 bits (112), Expect = 1e-19 Identities = 99/125 (79%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||| Sbjct 73886 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGTTAGT 73943 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 73944 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 74003 Query 121 GAACG 125 || || Sbjct 74004 GAGCG 74008 >seq13455 Length=468451 Score = 102 bits (112), Expect = 1e-19 Identities = 99/125 (79%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 124687 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 124744 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| ||||||||||| ||||| |||||||||| ||||||| || | Sbjct 124745 GGCGCGAAGCTACCATGCGCTGGATTATGACTGAATGCCTCTAAGTTAGAATCCGGGCTA 124804 Query 121 GAACG 125 || || Sbjct 124805 GAGCG 124809 >seq2450 Length=635042 Score = 102 bits (112), Expect = 1e-19 Identities = 99/125 (79%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| ||| | || ||| || |||| Sbjct 94751 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATTGTGCATGGTTGAAAAGCCAGT 94694 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 94693 GGCGCGAAGCTACGGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 94634 Query 121 GAACG 125 || || Sbjct 94633 GAGCG 94629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818940246784