Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq26974 143 2e-29 seq3895 113 4e-20 >seq26974 Length=240166 Score = 143 bits (158), Expect = 2e-29 Identities = 382/577 (66%), Gaps = 9/577 (2%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 |||| || ||| |||| ||| || ||| |||||||| || || |||||||| || | Sbjct 148604 TGTTTCCGATCCAGTACCCGGAAATCTGGGAAATGTACAAGAAAGCCGAAGCTTCATTTT 148663 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||||| |||||||||||| |||| | ||||| | ||||| || || || Sbjct 148664 GGACGGCGGAGGAGGTCGACCTGTCGCAGGACATCCGCCAGTGGGAATCCCTAACGGCCG 148723 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 || |||| ||||| | || ||| | || ||||| ||||| |||||||| |||||| Sbjct 148724 ACGAGAAACACTTCATCACGCACGTGCTCGCCTTCTTCGCCGCCTCGGACGGAATCGTCC 148783 Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303 || || | | | ||| | | || || ||||| || ||||||||| |||| Sbjct 148784 TCGAAAACCTCGCCGCCAGGTTCATGAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCT 148843 Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATA 61363 |||||||||| || ||||| ||||| ||||||| || |||||| | || | || | Sbjct 148844 ACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAAA 148903 Query 61364 CGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCG 61422 ||||||| | | | | || || | | || || || ||| | || ||| | ||| Sbjct 148904 CGTACATAAAAAATTCCGACGAAAAGAG-CCGCTTATTTCGCGCCTTTGAAACGGTGCCG 148962 Query 61423 -GCGGTGAAGCGGAAA-GCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACAT 61480 ||| || | ||| || || |||||| | ||||||||| | | ||| |||| Sbjct 148963 TGCGTTG--CCAAAAAGGCCGACTGGGCCCTAAATTGGATCGACGG---CTCGGAGACAT 149017 Query 61481 TTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTG 61540 | | || || || | || ||||| || || || |||| ||| || || Sbjct 149018 TCGCGGAGAGACTGATAGCGTTTGCTTGCGTGGAAGGCATATTCTTCTCGGGCAGTTTCT 149077 Query 61541 CCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGT 61600 ||| || |||||||| || || || || | ||||| || || |||||| || ||| Sbjct 149078 GCGCGATATTTTGGTTAAAAAAGCGCGGGTTAATGCCGGGACTAACCTTCTCAAACGAGC 149137 Query 61601 TGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 | || || || || || || | || || ||||| || Sbjct 149138 TAATCTCGCGAGATGAAGGACTCCACTGCGATTTCGC 149174 >seq3895 Length=609050 Score = 113 bits (124), Expect = 4e-20 Identities = 381/581 (66%), Gaps = 17/581 (3%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| || |||| | |||||| |||||||| || || ||||| || || | Sbjct 437421 TGTTCCCGATTCAGTACCCACAAATTTGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTT 437480 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | ||||| || ||| | || |||| | |||||||| || | || Sbjct 437481 GGACCGCTGAGGAAGTTGATCTTTCGCAAGATCTCCGCCACTGGGAGGCCCTAAC---CG 437537 Query 61184 GTGA--ACAA-CATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCG 61240 ||| | || || ||| | || || ||| | || ||||| || || || ||||| |||| Sbjct 437538 CTGACGAGAAGCACTTCGTCAAGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCG 437597 Query 61241 TCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTT 61300 || ||||| | | | | ||| | |||||| || || | ||||||||| | Sbjct 437598 TCCTCGAGAACCTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAGGCGCGTGCCT 437657 Query 61301 TCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCG 61360 ||||||||||||| || ||||| ||||| ||||||| || |||||| | || | | Sbjct 437658 TCTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAG 437717 Query 61361 ATACGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGAC-GAT 61418 | || ||||||| || | | || || | | || | || | ||||||||||| | | Sbjct 437718 AAACTTACATCAAAGACTCCGACGAAAAG-AACCGTCTCTTTCACGCCATCGAGACGGTT 437776 Query 61419 ACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTAC 61478 || ||| | | |||||| ||||| || ||||||||| | | ||| || Sbjct 437777 CCCTGCGTCGCA-AAGAAAGCCACGTGGGCGTTAAATTGGATCGACGG---CTCGGAGAC 437832 Query 61479 ATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGG--TGTATTTTTCAGTGGATCG 61536 || | || |||| | || ||||| || ||||| | | || |||| ||| Sbjct 437833 TTTCGCGGAGAGATTAATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAG-GGAGTT 437891 Query 61537 TTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAAT 61596 |||| ||| || |||||| | || || || || | ||||| || | || ||| || Sbjct 437892 TTTG-CGCCATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGATTAACATTCTCAAAC 437950 Query 61597 GAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 ||||| || || || || ||||| | || || ||||| || Sbjct 437951 GAGTTAATCTCGCGAGATGAGGGTCTCCACTGCGATTTCGC 437991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397409406521840