Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq58 401 9e-110 seq7 398 1e-108 seq20 374 1e-101 seq124 370 2e-100 seq12 257 3e-66 >seq58 Length=473374 Score = 401 bits (444), Expect = 9e-110 Identities = 245/256 (96%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 409418 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 409361 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 409360 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 409301 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 409300 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 409241 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 409240 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 409181 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 409180 GCCATAGTCCCTCTAA 409165 Score = 398 bits (440), Expect = 1e-108 Identities = 244/256 (95%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 401600 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 401657 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 401658 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 401717 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 401718 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 401777 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| | Sbjct 401778 CCCAGAACATCTAAGGGCATCACCGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGTG 401837 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 401838 GCCATAGTCCCTCTAA 401853 Score = 232 bits (256), Expect = 1e-58 Identities = 145/155 (94%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 102 GATGAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT 161 || ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 269480 GAGGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACAT 269539 Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 221 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 269540 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 269599 Query 222 AACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255 ||||||| |||||||| |||||| |||||| || Sbjct 269600 AACTTCCTTGGCCTAAGCGGCCATAGTCCCTCTAA 269634 >seq7 Length=32205869 Score = 398 bits (440), Expect = 1e-108 Identities = 244/256 (95%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 25304356 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 25304413 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 25304414 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 25304473 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 25304474 CCCGGGCCTGGCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 25304533 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 25304534 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 25304593 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 25304594 GCCATAGTCCCTCTAA 25304609 Score = 257 bits (284), Expect = 3e-66 Identities = 166/181 (92%), Gaps = 7/181 (4%) Strand=Plus/Plus Query 82 CAATGATCTATCCCC------ATCACGATGAAATTTCAAAGATTACCCGGACCTGTCGGC 135 ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 25340594 CAATGATCTATCCCCACCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGC 25340653 Query 136 CAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAG 195 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 25340654 CAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAG 25340713 Query 196 GGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGA 254 ||||||||||||||||||||||||||||||||| |||||||| |||||| |||||| | Sbjct 25340714 GGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCGGCCATAGTCCCTCTA 25340773 Query 255 A 255 | Sbjct 25340774 A 25340774 Score = 100 bits (110), Expect = 4e-19 Identities = 60/62 (97%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | Sbjct 4490717 GTACAAAGGGCAGGGACGTAGTCAACGCGAGC-TGATGACTCGCGCTTACTAGGAATTCC 4490659 Query 61 CT 62 || Sbjct 4490658 CT 4490657 >seq20 Length=1106287 Score = 374 bits (414), Expect = 1e-101 Identities = 239/256 (93%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 189978 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 189921 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 189920 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 189861 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| ||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 189860 CCCGGGCCTGTCGCTGCTGTACATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 189801 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 189800 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 189741 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 189740 GCCATAGTCCCTCTAA 189725 >seq124 Length=178874 Score = 370 bits (410), Expect = 2e-100 Identities = 238/256 (93%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 143577 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 143634 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 143635 CTCGTTGAAGACCAACAATTGCAATGATCTACCCCCATCACGATGAAATTTCAAAGATTA 143694 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| ||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 143695 CCCGGGCCTGTCGCTGCTGTACATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 143754 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 143755 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 143814 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 143815 GCCATAGTCCCTCTAA 143830 >seq12 Length=2762994 Score = 257 bits (284), Expect = 3e-66 Identities = 154/159 (97%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 1312533 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 1312476 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1312475 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 1312416 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATAC 159 ||||| |||||||||||||| ||||||||||||||||| Sbjct 1312415 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATAC 1312377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751964711460