Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq58 244 2e-62 seq7 244 2e-62 seq124 239 8e-61 seq20 239 8e-61 seq5 172 1e-40 seq86 113 8e-23 seq8 113 8e-23 seq1 105 1e-20 >seq58 Length=473374 Score = 244 bits (270), Expect = 2e-62 Identities = 247/316 (78%), Gaps = 8/316 (3%) Strand=Plus/Minus Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63 |||||||| | | ||||||| | ||| ||| || |||| ||||| | | || | Sbjct 270342 CCGGCCGGCTCGTCCCTTCTGCCGGAGATGCGCTCCTGGCCTTAACTGGCCGGGTCGTGC 270283 Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122 || | || |||||||||| ||||||||||| |||||||| |||| |||| | |||| Sbjct 270282 CACCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 270223 Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182 |||||||||| |||| | |||||| | |||| ||||| |||||| | ||| || Sbjct 270222 ATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA 270164 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||||||| Sbjct 270163 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 270104 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||||| ||||| ||| ||||||||||| || |||||||||||||||||||||| Sbjct 270103 GGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-A 270045 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||| |||| Sbjct 270044 GAACGAAAGTTGGGGG 270029 Score = 226 bits (250), Expect = 5e-57 Identities = 196/239 (82%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 81 TGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGAATAATA 139 |||| ||||||||||| |||||||| |||| |||| | |||||||||||||| |||| | Sbjct 402484 TGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACA 402425 Query 140 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGA 199 |||||| | |||| ||||| |||||| | ||| || ||||||||||| ||||| Sbjct 402424 TCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGA 402366 Query 200 TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTA 259 ||||||||| | ||||| || |||||||||||||||||||||||||| ||||| | Sbjct 402365 CAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGA 402306 Query 260 ACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||||||||||| || |||||||||||||||||||||| ||||||||||| |||| Sbjct 402305 ACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTGGGGG 402248 >seq7 Length=32205869 Score = 244 bits (270), Expect = 2e-62 Identities = 247/316 (78%), Gaps = 8/316 (3%) Strand=Plus/Minus Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63 |||||||| | | ||||||| | ||| ||| || |||| ||||| | | || | Sbjct 25305317 CCGGCCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCGGGTCGTGC 25305258 Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122 || | || |||||||||| ||||||||||| |||||||| |||| |||| | |||| Sbjct 25305257 CACCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 25305198 Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182 |||||||||| |||| | |||||| | |||| ||||| |||||| | ||| || Sbjct 25305197 ATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA 25305139 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||||||| Sbjct 25305138 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 25305079 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||||| ||||| ||| ||||||||||| || |||||||||||||||||||||| Sbjct 25305078 GGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-A 25305020 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||| |||| Sbjct 25305019 GAACGAAAGTTGGGGG 25305004 Score = 239 bits (264), Expect = 8e-61 Identities = 204/248 (82%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 25341414 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 25341355 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | |||| ||||| |||||| | ||| || |||||||| Sbjct 25341354 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGAGTAATGAT 25341296 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 25341295 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 25341236 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 25341235 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 25341177 Query 311 GTTAGGGG 318 ||| |||| Sbjct 25341176 GTTGGGGG 25341169 >seq124 Length=178874 Score = 239 bits (264), Expect = 8e-61 Identities = 204/248 (82%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 144470 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 144411 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | |||| ||||| |||||| | ||| || |||||||| Sbjct 144410 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGAGTAATGAT 144352 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 144351 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 144292 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 144291 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 144233 Query 311 GTTAGGGG 318 ||| |||| Sbjct 144232 GTTGGGGG 144225 Score = 116 bits (128), Expect = 7e-24 Identities = 107/134 (80%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC 178 |||||||||||||| |||| | |||||| | |||| ||||| |||||| | ||| Sbjct 133167 ATACATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGAT 133109 Query 179 CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238 || ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||| Sbjct 133108 CGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAAT 133049 Query 239 TCTTGGATTTATTG 252 ||||||||||| || Sbjct 133048 TCTTGGATTTACTG 133035 >seq20 Length=1106287 Score = 239 bits (264), Expect = 8e-61 Identities = 204/248 (82%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 189085 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 189144 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | |||| ||||| |||||| | ||| || |||||||| Sbjct 189145 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGAGTAATGAT 189203 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 189204 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 189263 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 189264 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 189322 Query 311 GTTAGGGG 318 ||| |||| Sbjct 189323 GTTGGGGG 189330 >seq5 Length=36147563 Score = 172 bits (190), Expect = 1e-40 Identities = 159/199 (80%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 102 AGCAGGCCTTTGCTC-GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTAT 160 |||| |||| |||| | |||||||||||||| |||| | |||||| | |||| |||| Sbjct 17777415 AGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACATCATAGGATTT-CGGTCCTAT 17777473 Query 161 TTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTC 220 | |||||| | ||| || ||||||||||| ||||| ||||||||| | |||| Sbjct 17777474 TCTGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCATATTT 17777533 Query 221 AATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACC 280 || |||||||||||||||||||||||||| |||| ||| ||||||||||| || || Sbjct 17777534 CATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGATGAACAACTGCGAAAGCATTTGCC 17777593 Query 281 AAGGATGTTTTCATTAATC 299 ||||||||||||||||||| Sbjct 17777594 AAGGATGTTTTCATTAATC 17777612 >seq86 Length=264478 Score = 113 bits (124), Expect = 8e-23 Identities = 103/129 (80%), Gaps = 1/129 (1%) Strand=Plus/Plus Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC 178 |||||||||||||| |||| | |||||| | |||| ||||| |||||| | ||| Sbjct 2942 ATACATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGAT 3000 Query 179 CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238 || ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||| Sbjct 3001 CGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAAT 3060 Query 239 TCTTGGATT 247 ||||||||| Sbjct 3061 TCTTGGATT 3069 >seq8 Length=22711823 Score = 113 bits (124), Expect = 8e-23 Identities = 105/132 (80%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC 178 |||||||||||||| |||| | |||||| | |||| ||||| |||||| | ||| Sbjct 8229575 ATACATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGAT 8229517 Query 179 CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238 || ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||| Sbjct 8229516 CGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAAT 8229457 Query 239 TCTTGGATTTAT 250 |||| ||||||| Sbjct 8229456 TCTTCGATTTAT 8229445 Score = 113 bits (124), Expect = 8e-23 Identities = 105/132 (80%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC 178 |||||||||||||| |||| | |||||| | |||| ||||| |||||| | ||| Sbjct 20416186 ATACATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGAT 20416128 Query 179 CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238 || ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||| Sbjct 20416127 CGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAAT 20416068 Query 239 TCTTGGATTTAT 250 |||| ||||||| Sbjct 20416067 TCTTCGATTTAT 20416056 >seq1 Length=28801852 Score = 105 bits (116), Expect = 1e-20 Identities = 178/246 (72%), Gaps = 10/246 (4%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAG-GCCTTTGCTCGA-ATACATTAGCATGG 132 ||||||| || ||| ||||||| ||||||| |||| ||||| | ||| ||||||| | Sbjct 1892161 TTACTTTAAAGAAACTAGAGTGCGCAAAGCAATGCCTATGCTCTATATATATTAGCAGAG 1892220 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATT 191 |||| | ||||| | |||| |||| |||||| || ||||| | ||||||||| Sbjct 1892221 GATAACATTGTAGGATTT-CGGTCATATTCTGTTGGCTT-TAGGAATCTGAGTAATGATT 1892278 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 |||| ||| | | || | |||||| || || | |||||||||| | |||||| Sbjct 1892279 AATATGGACAATTAGGCCATT-AGTATTTCATAGTAAATGGTGAAATTCGTATATTTAT- 1892336 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAG-GATGTTTTCATTAATCAGTGAACGAAA 310 ||| | ||| ||| | |||| ||| || ||||||||||||||||| |||||||| Sbjct 1892337 -AAGGCAAACAACTACAAAAGTGTTTGTTAAATGATGTTTTCATTAATCA-AGAACGAAA 1892394 Query 311 GTTAGG 316 || || Sbjct 1892395 ATTGGG 1892400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915155667712