Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq20 232 3e-58 seq7 187 1e-44 seq12 150 7e-34 seq58 147 9e-33 seq3 86.0 3e-14 >seq20 Length=1106287 Score = 232 bits (256), Expect = 3e-58 Identities = 223/282 (79%), Gaps = 7/282 (2%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGT--GTC 462 |||||||||||| ||||||||||||||||||| |||| | ||||||| ||| || Sbjct 191437 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCCAGT- 191495 Query 463 AAACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGA 521 |||||||| | || || ||| ||| || || || ||| | ||||||||| || Sbjct 191496 AAACCCGTAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCTCGCGGGTGCACCGCCGC 191552 Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581 |||| | |||| | | || || || |||| |||||| |||| |||||||||||||| Sbjct 191553 CCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGAT 191612 Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641 |||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| | Sbjct 191613 GGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGAT 191672 Query 642 TCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 191673 ACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 191714 Score = 156 bits (172), Expect = 2e-35 Identities = 131/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||||||||||||||||| | || ||| |||||||| | || || |||||| Sbjct 191053 CGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAATTCCGTCCAAGGCTAAA 191112 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || ||| ||||||||||||| ||||||| | || ||||||||||||| |||||| | Sbjct 191113 TACGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAA 191172 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| ||| || | ||||||||| | ||||||||| Sbjct 191173 AAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 191213 Score = 129 bits (142), Expect = 2e-27 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| |||||||||||||||||| | || || |||||||| | || || |||||| Sbjct 185448 CGAGTCAGGTTGTTTGGGAATGCAGCCCAAATCAGGCGGTAAATTCCATCCAAGGCTAAA 185507 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || ||| || ||| |||||| ||||||| | || |||||| ||||| |||||| | Sbjct 185508 TACGGGCGAGGGACTGATAGCAAACAAGTACCGCGAGGGAAAGAATAAAAGGACTTTGAA 185567 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| ||| || | ||||||||| | ||||||||| Sbjct 185568 AAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 185608 Score = 116 bits (128), Expect = 2e-23 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||||||||||||||||| | || ||| |||||||| | || || |||||| Sbjct 183000 CGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAATTCCGTCCAAGGCTAAA 183059 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTT 155 || ||| ||||||||||||| ||||||| | || ||||||||||||| ||||| Sbjct 183060 TACGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTT 183116 >seq7 Length=32205869 Score = 187 bits (206), Expect = 1e-44 Identities = 156/191 (82%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 493 GGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGT 552 || |||| ||| | ||||||||| || |||| | |||| | | || || || |||| Sbjct 25323730 GGCGGGATCCCTCGCGGGTGCACCGCCGCCCGACCTTGATCTTCTGAGAAGGGTTCGAGT 25323671 Query 553 AAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG 612 |||||| |||| |||||||||||||||||||||||||||||| ||| |||||||| Sbjct 25323670 GTGAGCATGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAG 25323611 Query 613 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGG 672 ||||||||||||||||||| ||||||| | ||| ||||||||||| ||||| | ||||| Sbjct 25323610 AGGAAACTCTGGTGGAGGCCCGCAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGG 25323551 Query 673 TATAGGGGCGA 683 ||||||||||| Sbjct 25323550 TATAGGGGCGA 25323540 Score = 158 bits (174), Expect = 5e-36 Identities = 113/129 (88%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||||| |||| |||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 23020297 GAGCATGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGG--AAGCCAGAG 23020354 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||||||||||||||| ||||||| | ||| ||||||||||| ||||| | ||||||| Sbjct 23020355 GAAACTCTGGTGGAGGCCCGCAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTA 23020414 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 23020415 TAGGGGCGA 23020423 Score = 105 bits (116), Expect = 3e-20 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100 |||| |||||||||||||||||| | || | |||||||| | || || | |||||| Sbjct 20591724 AGTCATGTTGTTTGGGAATGCAGCCCAAATCAGCTGGTAAATTCCATCCAAGGGTAAATA 20591783 Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAA 160 ||| ||||||| ||||| ||||||| | || ||||||||||||| |||||| | | Sbjct 20591784 CGGGCAAGAGACCAATAGCAAACAAGTACTGCGAGGGAAAGATGAAAAGGACTTTGAATA 20591843 Query 161 GAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 |||||| | || | |||||||| |||||||| Sbjct 20591844 GAGAGTCGACGAGTGCTTGAAATTGACAGGAGGGAAGC 20591881 >seq12 Length=2762994 Score = 150 bits (166), Expect = 7e-34 Identities = 128/158 (81%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||||||||||||||||| | || ||| |||||||| | || || |||||| Sbjct 1313608 CGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAATTCCGTCCAAGGCTAAA 1313667 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || ||| ||||||||||||| ||||||| | || ||||||||||||| |||||| | Sbjct 1313668 TACGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAA 1313727 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||||||| ||| || | ||||||||| | |||||| Sbjct 1313728 AAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAA 1313765 >seq58 Length=473374 Score = 147 bits (162), Expect = 9e-33 Identities = 129/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||||||||||||||||| | || ||| |||||||| | || || |||||| Sbjct 280679 CGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAATTCCGTCCAAGGCTAAA 280620 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || ||| ||||||||||||| ||||||| | || |||||| ||||| |||||| | Sbjct 280619 TACGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGACAAAAAGGACTTTGAA 280560 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| ||| || | ||||||||| | ||||||||| Sbjct 280559 AAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 280519 Score = 132 bits (146), Expect = 2e-28 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| |||| ||||||||| ||| | || |||| |||||||| | || || |||| | Sbjct 285264 CGAGTCAGGTTGGTTGGGAATGTAGCCCAAATTGGGCGGTAAATTCCGTCCAAGGCTAGA 285205 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || ||| |||||||||||| ||||||| | | ||||||||||||| |||||| | Sbjct 285204 TACGGGCGAGAGACCGATAGTAAACAAGTACTGCAAGGGAAAGATGAAAAGGACTTTGAA 285145 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| ||| || | ||||||||| | ||||||||| Sbjct 285144 AAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 285104 Score = 127 bits (140), Expect = 9e-27 Identities = 111/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 493 GGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGT 552 || |||| ||| | ||||||||| ||||||| | |||| | | || || || |||| Sbjct 280150 GGCGGGATCCCTCGCGGGTGCACCGCCGACCGACCTTGATCTTCTGAGAAGGGTTCGAGT 280091 Query 553 AAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG 612 |||||| |||| |||||||||||||||||||||| ||||||| ||| |||||||| Sbjct 280090 GTGAGCATGCCTGTCGGGACCCGAAAGATGGTGAACTGTGCCTGAGCGGGGCGAAGCCAG 280031 Query 613 AGGAAACTCTGGTGGAGG 630 |||||||||||||||||| Sbjct 280030 AGGAAACTCTGGTGGAGG 280013 Score = 86.0 bits (94), Expect = 3e-14 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 617 AACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATA 676 ||||||||||||||| ||||||| | ||| ||||||||||| ||||| | ||||||||| Sbjct 284833 AACTCTGGTGGAGGCCCGCAGCGATACTGACGTGCAAATCGTTCGTCTTACTTGGGTATA 284774 Query 677 GGGGCGA 683 ||||||| Sbjct 284773 GGGGCGA 284767 >seq3 Length=28715784 Score = 86.0 bits (94), Expect = 3e-14 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 617 AACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATA 676 ||||||||||||||| ||||||| | ||| ||||||||||| ||||| | ||||||||| Sbjct 9221449 AACTCTGGTGGAGGCCCGCAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATA 9221508 Query 677 GGGGCGA 683 ||||||| Sbjct 9221509 GGGGCGA 9221515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079896096200