Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq4844 480 2e-133 seq2 226 9e-57 seq9 197 4e-48 seq5 163 9e-38 seq1 156 1e-35 seq11 84.2 7e-14 seq7 77.0 1e-11 >seq4844 Length=160129 Score = 480 bits (532), Expect = 2e-133 Identities = 407/497 (82%), Gaps = 3/497 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 105898 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 105957 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 105958 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 106017 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | || |||||| || | ||||||| ||||||| ||||||||| Sbjct 106018 TTGAAAGAGAGGGGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 106075 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 106076 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGCTTAGTTGC 106135 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || | | |||| || || || || |||||||||||| || ||||||||||||| ||| Sbjct 106136 CACCGTCGAGTTTGGAACCCTGAGCAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 106195 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| ||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 106196 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 106255 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| |||||||| ||| || ||| ||| || |||||||||||||| Sbjct 106256 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 106315 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 || |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | Sbjct 106316 CAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 106375 Query 480 CGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 106376 CGGTGAATTCGTTCCCG 106392 Score = 480 bits (532), Expect = 2e-133 Identities = 407/497 (82%), Gaps = 3/497 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 141976 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 141917 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 141916 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 141857 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | || |||||| || | ||||||| ||||||| ||||||||| Sbjct 141856 TTGAAAGAGAGGGGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 141799 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 141798 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGCTTAGTTGC 141739 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || | | |||| || || || || |||||||||||| || ||||||||||||| ||| Sbjct 141738 CACCGTCGAGTTTGGAACCCTGAGCAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 141679 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| ||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 141678 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 141619 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| |||||||| ||| || ||| ||| || |||||||||||||| Sbjct 141618 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 141559 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 || |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | Sbjct 141558 CAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 141499 Query 480 CGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 141498 CGGTGAATTCGTTCCCG 141482 >seq2 Length=30838379 Score = 226 bits (250), Expect = 9e-57 Identities = 325/452 (72%), Gaps = 7/452 (2%) Strand=Plus/Minus Query 15 TGAAACTCAAAGG-AATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCG 73 ||||||||||| | ||||||| ||| || ||| |||||||||||||| | ||||||||| Sbjct 6174139 TGAAACTCAAAAGCAATTGACAGGGGCCTGCATAAGCGGTGGAGCATCTAGTTTAATTCA 6174080 Query 74 AAGCAACGCGAAGAACCTTACCAAATCTTGACATC-CTCTGACCCCTCTAGAGATAGAGG 132 | |||| | ||||||||| | |||||||| | || || || || | ||| Sbjct 6174079 ATGCAAAGTGAAGAACCTACCTGGGGCTTGACATGTCGGGGAATCCCCTTGAAGGACAGG 6174020 Query 133 TTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGA 192 | || | || || | | ||||| |||||| | |||||| ||| || | | | Sbjct 6174019 AGTGCCTTAAGGA--ACGCGGGAATAGGTGGTGCATGTCTATCGTCAACTC-TGCCATAA 6173963 Query 193 GATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTT 252 | |||||| ||||| |||||| | |||||||| |||||| ||||| | | ||||| Sbjct 6173962 GGTGTTGGATTAAGGTTCGCAACAATTGCAACCCTCGTGCTTAGCTGCCACCTTCAAGTT 6173903 Query 253 GGGCACTCTAAGTTGACTGCCGGTGACAAA--CCGGAGGAAGGTGGGGACGACGTCAAAT 310 || || || || | || | |||| | | ||| || |||||| || || ||||| | Sbjct 6173902 TGGAACCCTGAGCAGGCTATCAGTGATATAAGCCGAAGAAAGGTGATGATGATGTCAAGT 6173843 Query 311 CATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGC 370 |||| ||||||||||| |||||| ||||||||| |||||||| || |||||||| | Sbjct 6173842 CATCGTGCCCCTTATGCCTTGGGCGACACACGTGTTACAATGGCCAGGACAAAGGGTCGA 6173783 Query 371 GAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAA 430 || ||| ||| || || ||| || | ||||| | ||||||||| | |||||| Sbjct 6173782 GATCTCGCAAGGGTGAGTTAACTCCAAGAACTCGTTCTTAATTCGGATTGAAAGCTGCAA 6173723 Query 431 CTCGACTATATGAAGCTGGAATCGCTAGTAAT 462 |||| | || ||||||||||||||||||||| Sbjct 6173722 CTCGCTTGTACGAAGCTGGAATCGCTAGTAAT 6173691 Score = 196 bits (216), Expect = 1e-47 Identities = 198/256 (77%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 245 ATTAAGT---TGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACG 301 ||||||| | || || || || ||||| | |||| || || |||||||||| ||| | Sbjct 18978910 ATTAAGTCCTTAGGAACCCTGAGCAGACTGTCAGTGATAAGCCAGAGGAAGGTGAGGATG 18978851 Query 302 ACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACA 361 ||||||| |||| ||||| |||||| ||||| |||||||||||||||||| | | ||| Sbjct 18978850 ACGTCAAGTCATTATGCCTCTTATGCACTGGGCGACACACGTGCTACAATGGCCGAGACA 18978791 Query 362 AAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGT 421 ||||| | || ||| |||| ||| || ||| ||| | || |||||||| ||||| Sbjct 18978790 AAGGGTCGTGATCCCGTGAGGGTGAGCTAACTCCAAAAACTCGTCCTCAGTTCAGATTGC 18978731 Query 422 AGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTAC 480 || |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | | Sbjct 18978730 AGGCTGCAACTCGCCTGCATGAAGCCAGAATCGCTAGTAATCGTCGGTCAGCCATACGGC 18978671 Query 481 GGTGAATACGTTCCCG 496 | ||||| |||||||| Sbjct 18978670 GATGAATTCGTTCCCG 18978655 Score = 95.1 bits (104), Expect = 4e-17 Identities = 84/104 (81%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 394 CCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATC 453 ||| ||| | || |||||||| ||||| || |||||||||| || ||||||| ||||| Sbjct 18978305 CCAAAAACTCGTCCTCAGTTCAGATTGCAGGCTGCAACTCGCCTGCATGAAGCCAGAATC 18978246 Query 454 GCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTTCCCG 496 |||||||||||| | |||| ||| | || ||||| |||||||| Sbjct 18978245 GCTAGTAATCGTCGGTCAGCCATACGGCGATGAATTCGTTCCCG 18978202 >seq9 Length=18450785 Score = 197 bits (218), Expect = 4e-48 Identities = 186/236 (79%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 11486484 GACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 11486543 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| |||||||||||||||||| | ||||| ||| ||| | | | ||| | Sbjct 11486544 GGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGA 11486603 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446 || ||| || |||| | ||||||||||||||| ||||||||||| | |||||| Sbjct 11486604 GCGAAT-CCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGT 11486662 Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 |||||||||||||||||| ||||||||||| ||||||||| || |||| |||| Sbjct 11486663 TGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 11486718 Score = 131 bits (144), Expect = 5e-28 Identities = 93/107 (87%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct 11485411 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 11485352 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 |||||||||||||| ||||||| | |||||||||| |||||||| Sbjct 11485351 GTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACAT 11485305 >seq5 Length=36147563 Score = 163 bits (180), Expect = 9e-38 Identities = 177/234 (76%), Gaps = 17/234 (7%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct 12876945 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 12876886 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||| | |||||||||| ||||||| | ||| Sbjct 12876885 GTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACA---TATGA------ 12876835 Query 121 TAGAGATAGAGGTTTCCCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTG 173 | | | | | ||| ||| || || | | ||||||| ||||||| || Sbjct 12876834 -ACAACAAAACCTGTCCTTAACGGGATGGTACTTACTTTCATACAGGTGCTGCATGGCTG 12876776 Query 174 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||||||||||||||||||||||||| ||| |||||| |||||||| |||||| Sbjct 12876775 TCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCT 12876722 >seq1 Length=28801852 Score = 156 bits (172), Expect = 1e-35 Identities = 137/171 (80%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 |||||||||||| || || |||||||||| ||| ||| |||| ||||||||||||||||| Sbjct 10618388 GACTGCCGGTGATAAGCCAGAGGAAGGTGAGGATGACATCAAGTCATCATGCCCCTTATG 10618447 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| |||||||||||||||||| | |||||||| |||| |||||||| | Sbjct 10618448 CCCTGGGCGACACACGTGCTACAATGGCCGGGACAAAGGGTCGCGATCCCGCGAGGGTGA 10618507 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACT 437 || || ||| ||| || || ||||||||||| || |||||||||| || Sbjct 10618508 GCTAACTCCAAAAACCCGTCCTTAGTTCGGATTGCAGGCTGCAACTCGCCT 10618558 Score = 131 bits (144), Expect = 5e-28 Identities = 177/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 217 AGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGT 276 ||||||||||| || |||||||| | | |||| | || || | | ||||||| Sbjct 25466109 AGCGCAACCCTCGTACTGAGTTGCCACCTTCGAGTTTGAAACCCTGAACATATTGCCGGT 25466168 Query 277 GACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTA 336 | || || | |||| || ||| ||||| || |||||||||||||||| | ||| | Sbjct 25466169 CATAAGTCGAACGAAGATGAGGAGGACGTTAAGTCATCATGCCCCTTATACCCTAGGCGA 25466228 Query 337 CACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCA 396 ||||||||||||| ||| | |||||||| || | || ||| ||| || ||| Sbjct 25466229 CACACGTGCTACAGTGGCCGGGACAAAGGGTTATGATCCTGCAAGGGTGAGCTAACTCCA 25466288 Query 397 TAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCT 456 || |||||||||| |||||||| || |||||| |||||| ||| ||||| ||| Sbjct 25466289 AGAACCCGTTCTCAGTTTAGATTGTAGGCTACAACTCACCTATATAAAGTCGGAATGGCT 25466348 Query 457 AGTAATC 463 ||||||| Sbjct 25466349 AGTAATC 25466355 >seq11 Length=3133023 Score = 84.2 bits (92), Expect = 7e-14 Identities = 80/101 (79%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 ||||| ||||||| ||||||||||||| | |||||||||| |||||||||||||||| Sbjct 1616131 CGCAAAAATGAAACTAAAAGGAATTGACGAGCCCCCGCACAAGTGGTGGAGCATGTGGTT 1616190 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 |||||| | | | ||| || |||| | || |||| ||| Sbjct 1616191 TAATTCTATTCGTGGTGAATAATCTTATC-AAGCTTGGCAT 1616230 >seq7 Length=32205869 Score = 77.0 bits (84), Expect = 1e-11 Identities = 80/103 (78%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGG--GGACCCGCACAAGCGGTGGAGCATGTGG 64 ||||||||||||||| |||||||||||||| || | | ||| || ||||||| || || Sbjct 25341035 CGCAAGGTTGAAACTTAAAGGAATTGACGGAAGGGCAC-CACCAGGAGTGGAGCCTGCGG 25340977 Query 65 TTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 |||||| || |||| || ||| ||||||| || ||||| Sbjct 25340976 CTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACAT 25340934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503927146240