Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq4844 226 6e-57 seq9 206 6e-51 seq1 174 3e-41 seq4 120 7e-25 seq21 95.1 3e-17 seq3 77.0 7e-12 >seq4844 Length=160129 Score = 226 bits (250), Expect = 6e-57 Identities = 240/310 (77%), Gaps = 20/310 (6%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 105435 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 105377 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 105376 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 105317 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 105316 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 105257 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | | || | |||||||| Sbjct 105256 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 105211 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| ||||| ||| || || |||||||||| Sbjct 105210 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 105153 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 105152 GTCCGCCACT 105143 Score = 226 bits (250), Expect = 6e-57 Identities = 240/310 (77%), Gaps = 20/310 (6%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 142439 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 142497 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 142498 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 142557 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 142558 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 142617 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | | || | |||||||| Sbjct 142618 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 142663 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| ||||| ||| || || |||||||||| Sbjct 142664 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 142721 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 142722 GTCCGCCACT 142731 >seq9 Length=18450785 Score = 206 bits (228), Expect = 6e-51 Identities = 180/220 (82%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 11485841 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 11485898 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 11485899 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 11485958 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 11485959 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 11486018 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 11486019 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 11486058 >seq1 Length=28801852 Score = 174 bits (192), Expect = 3e-41 Identities = 129/151 (85%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 |||||||||||||||||| || ||||||||||| |||||||||||||||| ||| | Sbjct 12824644 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGTTGCCTCCCGTAGGAGTTTGGGTTG 12824585 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 ||||||||| |||||||| |||||||||||||| || || ||| |||| ||||||| || Sbjct 12824584 TGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGAACTAGCTACTGATCATCGCCTTAGT 12824525 Query 167 GAGCCATTACCTCACCAACTAGCTAATCCGA 197 ||| ||| ||||||||||||||||||| || Sbjct 12824524 AAGCTATTGCCTCACCAACTAGCTAATCAGA 12824494 Score = 174 bits (192), Expect = 3e-41 Identities = 129/151 (85%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 |||||||||||||||||| || ||||||||||| |||||||||||||||| ||| | Sbjct 12834191 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGTTGCCTCCCGTAGGAGTTTGGGTTG 12834132 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 ||||||||| |||||||| |||||||||||||| || || ||| |||| ||||||| || Sbjct 12834131 TGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGAACTAGCTACTGATCATCGCCTTAGT 12834072 Query 167 GAGCCATTACCTCACCAACTAGCTAATCCGA 197 ||| ||| ||||||||||||||||||| || Sbjct 12834071 AAGCTATTGCCTCACCAACTAGCTAATCAGA 12834041 >seq4 Length=19951838 Score = 120 bits (132), Expect = 7e-25 Identities = 169/232 (73%), Gaps = 19/232 (8%) Strand=Plus/Minus Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 ||||||||| | |||||| |||||||| ||||||||||| ||| |||| |||||||||| Sbjct 13637445 TGTCTCAGTCCTAGTGTGGTTGATCATCTTCTCAGACCAGCTACTGATCATCGCCTTGGT 13637386 Query 167 GAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCC 225 ||| ||| ||||||||||||||||||| ||| | || | | || || ||| Sbjct 13637385 AAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCT-----CG---GGC-- 13637336 Query 226 GAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTT 285 || ||| |||| | | | | | || | ||||||||| |||||||| ||| Sbjct 13637335 ---GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTT 13637280 Query 286 ATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 | ||| || ||| ||||| ||| || || ||||||||||||||||| || Sbjct 13637279 GTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACT 13637230 >seq21 Length=1065981 Score = 95.1 bits (104), Expect = 3e-17 Identities = 124/170 (73%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||| |||||||| || ||| || ||||||||| || |||| ||||||||||| | Sbjct 992812 CACACGGCATTG-CTCCTTCAAAATTACGCCCATTGCGGAAAATTCTCCACTGCTGCCCC 992870 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 ||||||| ||| | | ||||||| | | |||| ||||||||||||| | ||| | Sbjct 992871 ---TAGGAGTTTGGGCTGCATCTCAGTCCTAATGTGGTTGATCATCCTCTCGAATCAGCT 992927 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 | |||| ||| || || | | ||| |||| |||||| | ||||| ||| Sbjct 992928 ATTGATCATCGTCTCAGTAAACTATTGCCTCGCCAACTGGTTAATCAGAC 992977 >seq3 Length=28715784 Score = 77.0 bits (84), Expect = 7e-12 Identities = 65/79 (82%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||| |||||| |||||| || | || ||||||||||||| Sbjct 26270658 CACGCGGCATTG-CTCCATCATGCTTTCACCCATTACGAAAAAATCTCCACTGCTGCCTC 26270716 Query 89 CCGTAGGAGTCTGGACCGT 107 |||||||||| ||| |||| Sbjct 26270717 CCGTAGGAGTTTGGGCCGT 26270735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071948072320