Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq4844 259 2e-66 seq11 111 6e-22 >seq4844 Length=160129 Score = 259 bits (286), Expect = 2e-66 Identities = 344/470 (73%), Gaps = 27/470 (6%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 109828 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 109769 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 109768 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 109709 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 109708 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 109649 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| |||||||||||||||||||| || || |||| Sbjct 109648 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 109596 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 109595 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA----GA 109542 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 || ||| | |||| || | ||| || | ||||||| || ||||||||| Sbjct 109541 GCC--CCGGGCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 109489 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| | Sbjct 109488 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 109429 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 109428 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 109379 Score = 259 bits (286), Expect = 2e-66 Identities = 344/470 (73%), Gaps = 27/470 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 138046 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 138105 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 138106 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 138165 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 138166 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 138225 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| |||||||||||||||||||| || || |||| Sbjct 138226 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 138278 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 138279 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA----GA 138332 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 || ||| | |||| || | ||| || | ||||||| || ||||||||| Sbjct 138333 GCC--CCGGGCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 138385 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| | Sbjct 138386 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 138445 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 138446 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 138495 >seq11 Length=3133023 Score = 111 bits (122), Expect = 6e-22 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 468 ATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTA 527 || |||||| || ||||||||||||| ||||| ||||||||| ||||||||||||| Sbjct 2151170 ATAGTTTCATGTTCTATTTCACTCCCTTATGGGGGTTCTTTTCACCCTTCCCTCACGGTA 2151111 Query 528 CTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCC 576 || | |||||||||||||| |||||||||||| ||| |||||||| Sbjct 2151110 CTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCC 2151062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817511955456