Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq124 131 2e-28 seq58 131 2e-28 seq20 131 2e-28 seq7 131 2e-28 seq5 91.5 2e-16 seq86 84.2 2e-14 seq8 84.2 2e-14 >seq124 Length=178874 Score = 131 bits (144), Expect = 2e-28 Identities = 140/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 144470 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 144411 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 144410 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 144353 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 144352 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 144293 Query 190 T 190 | Sbjct 144292 T 144292 Score = 87.8 bits (96), Expect = 2e-15 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| ||||| |||| | |||||| | |||| ||||| ||| || | ||| Sbjct 133167 ATACATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGAT 133109 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||| || | ||| ||||||||| | ||||| || |||| |||||||| Sbjct 133108 CGGA-GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAA 133050 Query 178 TTCTTGGATTTA 189 |||||||||||| Sbjct 133049 TTCTTGGATTTA 133038 >seq58 Length=473374 Score = 131 bits (144), Expect = 2e-28 Identities = 140/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 270274 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 270215 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 270214 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 270157 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 270156 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 270097 Query 190 T 190 | Sbjct 270096 T 270096 Score = 120 bits (132), Expect = 3e-25 Identities = 132/172 (77%), Gaps = 3/172 (2%) Strand=Plus/Minus Query 20 TGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGAATAATA 78 |||| ||||||||| | |||||||| |||| |||| | |||||||| ||||| |||| | Sbjct 402484 TGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACA 402425 Query 79 GAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGG 138 |||||| | |||| ||||| ||| || | ||| || |||||||| || | || Sbjct 402424 TCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGATTAACAGGG 402367 Query 139 ATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 402366 ACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 402315 >seq20 Length=1106287 Score = 131 bits (144), Expect = 2e-28 Identities = 140/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 189085 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 189144 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 189145 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 189202 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 189203 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 189262 Query 190 T 190 | Sbjct 189263 T 189263 >seq7 Length=32205869 Score = 131 bits (144), Expect = 2e-28 Identities = 140/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 25305249 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 25305190 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 25305189 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 25305132 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 25305131 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 25305072 Query 190 T 190 | Sbjct 25305071 T 25305071 Score = 131 bits (144), Expect = 2e-28 Identities = 140/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 25341414 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 25341355 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 25341354 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 25341297 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 25341296 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 25341237 Query 190 T 190 | Sbjct 25341236 T 25341236 >seq5 Length=36147563 Score = 91.5 bits (100), Expect = 2e-16 Identities = 113/151 (75%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 41 AGCAGGCCTTTGCTC-GAATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTAT 99 |||| |||| |||| | |||||||| ||||| |||| | |||||| | |||| |||| Sbjct 17777415 AGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACATCATAGGATTT-CGGTCCTAT 17777473 Query 100 TTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATT 159 | ||| || | ||| || |||||||| || | ||| ||||||||| | |||| Sbjct 17777474 TCTGTTGGCCTTCGGGATCGGA-GTAATGATTAACAGGGACAGTCGGGGGCATTCATATT 17777532 Query 160 CAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 || |||| ||||||||||||||||||||| Sbjct 17777533 TCATAGTCAGAGGTGAAATTCTTGGATTTAT 17777563 >seq86 Length=264478 Score = 84.2 bits (92), Expect = 2e-14 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| ||||| |||| | |||||| | |||| ||||| ||| || | ||| Sbjct 2942 ATACATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGAT 3000 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||| || | ||| ||||||||| | ||||| || |||| |||||||| Sbjct 3001 CGGA-GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAA 3059 Query 178 TTCTTGGATT 187 |||||||||| Sbjct 3060 TTCTTGGATT 3069 >seq8 Length=22711823 Score = 84.2 bits (92), Expect = 2e-14 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| ||||| |||| | |||||| | |||| ||||| ||| || | ||| Sbjct 8229575 ATACATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGAT 8229517 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||| || | ||| ||||||||| | ||||| || |||| |||||||| Sbjct 8229516 CGGA-GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAA 8229458 Query 178 TTCTTGGATTTAT 190 ||||| ||||||| Sbjct 8229457 TTCTTCGATTTAT 8229445 Score = 84.2 bits (92), Expect = 2e-14 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| ||||| |||| | |||||| | |||| ||||| ||| || | ||| Sbjct 20416186 ATACATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGAT 20416128 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||| || | ||| ||||||||| | ||||| || |||| |||||||| Sbjct 20416127 CGGA-GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAA 20416069 Query 178 TTCTTGGATTTAT 190 ||||| ||||||| Sbjct 20416068 TTCTTCGATTTAT 20416056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511975973760