Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq4844 266 8e-69 seq9 170 5e-40 seq1 156 1e-35 seq21 111 4e-22 seq4 109 1e-21 seq3 93.3 1e-16 >seq4844 Length=160129 Score = 266 bits (294), Expect = 8e-69 Identities = 306/410 (75%), Gaps = 30/410 (7%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 105461 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 105402 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 105401 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 105342 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 105341 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 105282 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| || | || ||| ||| |||| Sbjct 105281 ACTAGCTAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 105233 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||| ||| | ||||||| |||| Sbjct 105232 TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 105175 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||||||||||| ||| || || |||| Sbjct 105174 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 105129 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 105128 ---CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 105082 Score = 266 bits (294), Expect = 8e-69 Identities = 306/410 (75%), Gaps = 30/410 (7%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 142413 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 142472 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 142473 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 142532 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 142533 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 142592 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| || | || ||| ||| |||| Sbjct 142593 ACTAGCTAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 142641 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||| ||| | ||||||| |||| Sbjct 142642 TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 142699 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||||||||||| ||| || || |||| Sbjct 142700 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 142745 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 142746 ---CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 142792 >seq9 Length=18450785 Score = 170 bits (188), Expect = 5e-40 Identities = 154/193 (80%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 11485841 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 11485900 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| |||| Sbjct 11485901 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 11485960 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||| |||||||||| | ||| | | || ||| ||| ||||| Sbjct 11485961 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGA 11486020 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 11486021 CCAACTACCTAAT 11486033 >seq1 Length=28801852 Score = 156 bits (172), Expect = 1e-35 Identities = 149/191 (78%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || | ||| ||||||||| | | |||| || | |||||||| |||||||| Sbjct 12824687 TTCACGAACCGTAGGCCTTCTACCTCCACGATATATTTTTCTGTCAGGCTTTCGCCCATT 12824628 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || ||||||||||| |||||||||||||||| ||| |||||||||| ||||||| Sbjct 12824627 GCGGAAAATTCCCCACTGTTGCCTCCCGTAGGAGTTTGGGTTGTGTCTCAGTCCCAGTGT 12824568 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| || ||||| |||| |||||| || || ||| || | ||| Sbjct 12824567 GGCTGATCATCCTCTCGAACTAGCTACTGATCATCGCCTTAGTAAGCTATTGCCTCACCA 12824508 Query 185 ACTAGCTAATC 195 ||||||||||| Sbjct 12824507 ACTAGCTAATC 12824497 Score = 156 bits (172), Expect = 1e-35 Identities = 149/191 (78%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || | ||| ||||||||| | | |||| || | |||||||| |||||||| Sbjct 12834234 TTCACGAACCGTAGGCCTTCTACCTCCACGATATATTTTTCTGTCAGGCTTTCGCCCATT 12834175 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || ||||||||||| |||||||||||||||| ||| |||||||||| ||||||| Sbjct 12834174 GCGGAAAATTCCCCACTGTTGCCTCCCGTAGGAGTTTGGGTTGTGTCTCAGTCCCAGTGT 12834115 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| || ||||| |||| |||||| || || ||| || | ||| Sbjct 12834114 GGCTGATCATCCTCTCGAACTAGCTACTGATCATCGCCTTAGTAAGCTATTGCCTCACCA 12834055 Query 185 ACTAGCTAATC 195 ||||||||||| Sbjct 12834054 ACTAGCTAATC 12834044 >seq21 Length=1065981 Score = 111 bits (122), Expect = 4e-22 Identities = 131/177 (74%), Gaps = 3/177 (2%) Strand=Plus/Plus Query 19 GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCC 78 ||||||| | | ||| |||||| ||| | ||| || ||||||||| | || |||| || Sbjct 992800 GCCTTCTACCTCCACACGGCATTGCTCCTTCAAAATTACGCCCATTGCGGAAAATTCTCC 992859 Query 79 ACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTC 138 ||||||| ||| ||||||| ||| | | ||||||| | | ||||| || |||||||| Sbjct 992860 ACTGCTG---CCCCTAGGAGTTTGGGCTGCATCTCAGTCCTAATGTGGTTGATCATCCTC 992916 Query 139 TCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 || | |||||| |||| ||| || || | ||| || |||||||| | ||||| Sbjct 992917 TCGAATCAGCTATTGATCATCGTCTCAGTAAACTATTGCCTCGCCAACTGGTTAATC 992973 >seq4 Length=19951838 Score = 109 bits (120), Expect = 1e-21 Identities = 163/229 (71%), Gaps = 13/229 (6%) Strand=Plus/Minus Query 108 TGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT 167 ||||||||| | ||||||| || ||||| |||||||||||||| |||| |||||| ||| Sbjct 13637445 TGTCTCAGTCCTAGTGTGGTTGATCATCTTCTCAGACCAGCTACTGATCATCGCCTTGGT 13637386 Query 168 GGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCG 227 || ||| || | |||||||||||||| | | | | ||| || | | Sbjct 13637385 AAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCC--------TCGGGCGG 13637334 Query 228 AAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTA 287 | ||| ||| |||| || | | | || | ||||||||| |||||||||| ||| Sbjct 13637333 A--TTCCTCCT-TTTGCTCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTG 13637279 Query 288 TCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACT 336 | ||||||| ||||| ||| | | |||||||||||||||||||| Sbjct 13637278 TTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACT 13637230 >seq3 Length=28715784 Score = 93.3 bits (102), Expect = 1e-16 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||| | |||||||| | | |||||||||| ||| ||||| |||| | |||||| Sbjct 26270632 TTCACGACCTGTGGGCCTTCTACCTCCACGCGGCATTGCTCCATCATGCTTTCACCCATT 26270691 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGT 108 | || | || ||||||||||||||||||||||| ||| |||| Sbjct 26270692 ACGAAAAAATCTCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGT 26270735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222340786944