Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq4844 329 1e-87 seq9 269 8e-70 seq1 165 2e-38 seq21 147 7e-33 seq4 104 7e-20 seq5 102 2e-19 seq3 93.3 1e-16 seq46 77.0 1e-11 >seq4844 Length=160129 Score = 329 bits (364), Expect = 1e-87 Identities = 280/343 (82%), Gaps = 3/343 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 105264 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 105323 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 105324 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 105383 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 105384 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 105443 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 ||||| |||||||| || ||| | | | ||||| |||||||||| || ||| Sbjct 105444 AGGCCCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCTGGGGAAT 105503 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| |||||||||||||||||||||| ||| || ||||||||||| Sbjct 105504 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCG 105563 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || ||||||| Sbjct 105564 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 105605 Score = 329 bits (364), Expect = 1e-87 Identities = 280/343 (82%), Gaps = 3/343 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 142610 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 142551 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 142550 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 142491 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 142490 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 142431 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 ||||| |||||||| || ||| | | | ||||| |||||||||| || ||| Sbjct 142430 AGGCCCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCTGGGGAAT 142371 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| |||||||||||||||||||||| ||| || ||||||||||| Sbjct 142370 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCG 142311 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || ||||||| Sbjct 142310 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 142269 >seq9 Length=18450785 Score = 269 bits (298), Expect = 8e-70 Identities = 258/327 (79%), Gaps = 5/327 (2%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| | | ||| |||| | || || Sbjct 11486033 ATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 11485974 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 11485973 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 11485914 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | | Sbjct 11485913 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 11485854 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAAGG--AAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || ||| ||| ||||| | || ||||| ||||||| Sbjct 11485853 GCCGCTTGTAAAGCTCTTTCGTCGAGGGCGCGATCATGACAGGACCCGAGGAAGAAGCCC 11485794 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| | Sbjct 11485793 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGA 11485734 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || |||||||||||| |||||| ||| Sbjct 11485733 CT-GGGCGTAAAGGGCACGTAGGCGGT 11485708 >seq1 Length=28801852 Score = 165 bits (182), Expect = 2e-38 Identities = 127/151 (84%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 |||||||||||||||||| ||| || |||||| ||||||| |||||||||| || Sbjct 12824494 TCTGATTAGCTAGTTGGTGAGGCAATAGCTTACTAAGGCGATGATCAGTAGCTAGTTCGA 12824553 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 |||| ||||| |||||| ||| |||||||||| |||||||||||||||||||| |||| Sbjct 12824554 GAGGATGATCAGCCACACTGGGACTGAGACACAACCCAAACTCCTACGGGAGGCAACAGT 12824613 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGA 314 ||||||| || | |||||||| ||||||||| Sbjct 12824614 GGGGAATTTTCCGCAATGGGCGAAAGCCTGA 12824644 Score = 165 bits (182), Expect = 2e-38 Identities = 127/151 (84%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 |||||||||||||||||| ||| || |||||| ||||||| |||||||||| || Sbjct 12834041 TCTGATTAGCTAGTTGGTGAGGCAATAGCTTACTAAGGCGATGATCAGTAGCTAGTTCGA 12834100 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 |||| ||||| |||||| ||| |||||||||| |||||||||||||||||||| |||| Sbjct 12834101 GAGGATGATCAGCCACACTGGGACTGAGACACAACCCAAACTCCTACGGGAGGCAACAGT 12834160 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGA 314 ||||||| || | |||||||| ||||||||| Sbjct 12834161 GGGGAATTTTCCGCAATGGGCGAAAGCCTGA 12834191 >seq21 Length=1065981 Score = 147 bits (162), Expect = 7e-33 Identities = 233/331 (70%), Gaps = 5/331 (2%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||| | |||||| ||| || | |||| || ||| ||||| |||| || Sbjct 992980 CGCGTCTGATTAACCAGTTGGCGAGGCAATAGTTTACTGAGACGATGATCAATAGCTGAT 992921 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||||| ||||| ||||||| | ||||||| | | ||||||||||| | ||||| Sbjct 992920 TCGAGAGGATGATCAACCACATTAGGACTGAGATGCAGCCCAAACTCCTA---GGGGCAG 992864 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 |||||| |||| || | |||||||| || ||| | ||||| |||| ||| | || Sbjct 992863 CAGTGGAGAATTTTCCGCAATGGGCGTAATTTTGAAGGAGCAATGCCGTGTGGAGGTAGA 992804 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGA-AGATAATGACGGTACTTGAGGAGGA 398 |||| | || || || ||| | || || | || |||||||||| | ||| | Sbjct 992803 AGGCTCATGCGTGGTGAACTTCTTTTCTAGAGAAGAGGCAATGACGGTATCTATGGAATA 992744 Query 399 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 458 ||| || |||||| |||| |||| || | ||||| ||| || || |||| | Sbjct 992743 AGCATCGACTAACTTTGTGCTAGCAACCACAATAATATAGAGGATGCATGCATTATTCAA 992684 Query 459 AATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 ||| | | ||||||||| || ||||||||| Sbjct 992683 AATGA-TTAGGCGTAAAGCGTCCGTAGGTGG 992654 >seq4 Length=19951838 Score = 104 bits (114), Expect = 7e-20 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 13637351 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 13637410 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACA 254 |||||| | ||||| ||||| | | ||||||||| Sbjct 13637411 CTGAGAAGATGATCAACCACACTAGGACTGAGACA 13637445 >seq5 Length=36147563 Score = 102 bits (112), Expect = 2e-19 Identities = 78/91 (86%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 400 GCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGA 459 ||||||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||| Sbjct 12877331 GCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGA 12877272 Query 460 ATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || ||| |||||||||||| |||||| ||| Sbjct 12877271 ATGACT-GGGCGTAAAGGGCACGTAGGCGGT 12877242 >seq3 Length=28715784 Score = 93.3 bits (102), Expect = 1e-16 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 254 ACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTG 313 |||| ||||||||||||||||||||||||||| || | || | |||||| ||||| || Sbjct 26270735 ACGGCCCAAACTCCTACGGGAGGCAGCAGTGGAGATTTTTTCGTAATGGGTGAAAGCATG 26270676 Query 314 ATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAA 357 ||| ||||| |||||||| | ||||||| | |||||| || Sbjct 26270675 ATGGAGCAATGCCGCGTGGAGGTAGAAGGCCCACAGGTCGTGAA 26270632 >seq46 Length=640763 Score = 77.0 bits (84), Expect = 1e-11 Identities = 86/114 (75%), Gaps = 7/114 (6%) Strand=Plus/Plus Query 238 ACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGC----AGCA---GTGGGGAAT 290 ||| || ||||||||| ||| | ||| |||||||| || |||| |||||||| Sbjct 110608 ACACTGAGACTGAGACAAGGTTCTGACTTCTACGGGAAGCGAGAAGCACAAGTGGGGAAC 110667 Query 291 ATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC 344 || |||||||||||||||||||| | ||||| ||| |||| | ||||||| Sbjct 110668 TTTTCACAATGGGCAAAAGCCTGACGGAGCAATGCCTCGTGGAGGTAGAAGGCC 110721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497527456256