Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq7 699 0.0 seq1 699 0.0 seq2 347 4e-93 seq58 316 7e-84 seq20 288 3e-75 seq3 277 6e-72 seq4 159 1e-36 seq15 107 6e-21 seq8 82.4 2e-13 >seq7 Length=32205869 Score = 699 bits (774), Expect = 0.0 Identities = 478/534 (90%), Gaps = 7/534 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 23022204 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 23022145 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 23022144 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 23022085 Query 127 GGCCCGCGAA---GGACCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCA 182 ||||| || || |||| ||| ||| | || | ||| || |||| |||| Sbjct 23022084 GGCCCCCGTGAGGGGGCCTTGGGTCCAAAAAGAGGGGCAGTGCC--CCGCCTCCGATTCA 23022027 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAAC-GGCTCCC 241 || ||||||||| |||| ||| ||||||||||||||||| ||||| | ||||||| Sbjct 23022026 CGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCGTTTCCGGCTCCC 23021967 Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 23021966 ACTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 23021907 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 23021906 TCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGT 23021847 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 23021846 AGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 23021787 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 23021786 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 23021727 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 23021726 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATC 23021673 Score = 695 bits (770), Expect = 0.0 Identities = 477/534 (89%), Gaps = 7/534 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||| ||| |||| | ||||||||||||||||||| Sbjct 25302613 CTTTTGTTCCACACGAGATTTCTGTGCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 25302672 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 25302673 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 25302732 Query 127 GGCCCGCGAA---GGACCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCA 182 ||||| || || |||| ||| ||| | || | ||| || |||| |||| Sbjct 25302733 GGCCCCCGTGAGGGGGCCTTGGGTCCAAAAAGAGGGGCAGTGCC--CCGCCTCCGATTCA 25302790 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAAC-GGCTCCC 241 || ||||||||| |||| ||| ||||||||||||||||| ||||| | ||||||| Sbjct 25302791 CGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCGTTTCCGGCTCCC 25302850 Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 25302851 ACTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 25302910 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 25302911 TCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGT 25302970 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 25302971 AGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 25303030 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 25303031 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 25303090 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 25303091 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATC 25303144 Score = 86.0 bits (94), Expect = 2e-14 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTG-CGCCGAAACGG-CTCCCA 242 || || |||||| || | ||| | |||| |||||||| || | | | | || ||| Sbjct 29673416 GAATACGTAAAATAATGTTAATGCTAGTAGTATTTCATTTTTCACTGTCTCCAACTTCCA 29673357 Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 ||||| ||||||| ||||||||||||| |||||| ||||||||||||||||| || || Sbjct 29673356 CTTATACTACACCATTCAAGTCATTTCATAAAGTCATACTAGAGTCAAGCTCAATAGAGT 29673297 Query 303 C 303 | Sbjct 29673296 C 29673296 >seq1 Length=28801852 Score = 699 bits (774), Expect = 0.0 Identities = 479/534 (90%), Gaps = 7/534 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||| ||||||||||||| Sbjct 28373207 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGAACACCTGCGTTATC 28373148 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 28373147 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 28373088 Query 127 GGCCC--GCGAAGGA-CCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCA 182 ||||| |||| || |||| ||| ||| | || | ||| || |||| |||| Sbjct 28373087 GGCCCCCGCGAGGGGGCCTTGGGTCCAAAAAGAGGGGCAGTGCC--CCGCCTCCGATTCA 28373030 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAAC-GGCTCCC 241 || ||||||||| |||| ||| ||||||||||||||||| ||||| | ||||||| Sbjct 28373029 CGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCGTTTCCGGCTCCC 28372970 Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 28372969 ACTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 28372910 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 28372909 TCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGT 28372850 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 28372849 AGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 28372790 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 28372789 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 28372730 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 28372729 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATC 28372676 Score = 313 bits (346), Expect = 8e-83 Identities = 261/315 (83%), Gaps = 7/315 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || || ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 28373365 CTTTTGTTCCCCACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 28373424 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 28373425 TTTTAACAGCTGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 28373484 Query 127 GGCCCGCGAAGGA---CCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCA 182 ||||| || || |||| ||| ||| | || | ||| || ||| |||| Sbjct 28373485 GGCCCCCGTGGGGGGGCCTTGGGTCCAAAAAGAGGGGCAGTGCC--CCGCCCCCGATTCA 28373542 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAAC-GGCTCCC 241 || ||||||||| |||| ||| ||||||||||||||||| ||||| | ||||||| Sbjct 28373543 CGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCGTTTCCGGCTCCC 28373602 Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 28373603 ACTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 28373662 Query 302 TCTTCTTTCCCCGCT 316 ||||||||||||||| Sbjct 28373663 TCTTCTTTCCCCGCT 28373677 >seq2 Length=30838379 Score = 347 bits (384), Expect = 4e-93 Identities = 197/200 (99%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 275 GTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTT 334 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1335909 GTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTT 1335968 Query 335 CCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATT 394 |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 1335969 CCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATT 1336028 Query 395 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1336029 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 1336088 Query 455 CCCGCCGTTTACCCGCGCTT 474 |||||||||||||||||||| Sbjct 1336089 CCCGCCGTTTACCCGCGCTT 1336108 >seq58 Length=473374 Score = 316 bits (350), Expect = 7e-84 Identities = 178/180 (99%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 282434 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 282493 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 282494 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 282553 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 282554 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATC 282613 >seq20 Length=1106287 Score = 288 bits (318), Expect = 3e-75 Identities = 162/164 (99%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 372 AGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCT 431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 193531 AGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCT 193472 Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 193471 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 193412 Query 492 TTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||||||| | |||| Sbjct 193411 TTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATC 193368 Score = 217 bits (240), Expect = 5e-54 Identities = 123/125 (98%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 411 TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGC 470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 193088 TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGC 193029 Query 471 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 193028 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTGA 192969 Query 531 ACATC 535 |||| Sbjct 192968 GCATC 192964 >seq3 Length=28715784 Score = 277 bits (306), Expect = 6e-72 Identities = 155/156 (99%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14639413 TAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 14639472 Query 418 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14639473 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 14639532 Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCA 513 |||||||||||||||||||||||||||||||||||| Sbjct 14639533 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCA 14639568 >seq4 Length=19951838 Score = 159 bits (176), Expect = 1e-36 Identities = 112/128 (88%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | |||||||||||| |||||| Sbjct 4612069 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTACGTTATC 4612128 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 4612129 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 4612188 Query 127 GGCCCGCG 134 ||||| || Sbjct 4612189 GGCCCCCG 4612196 >seq15 Length=1971872 Score = 107 bits (118), Expect = 6e-21 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 ||||| || ||| ||||||||||||||| |||| | ||||||| | ||||||| Sbjct 103310 TTTTGTTCCACAAGAGATTTCTGTTCTCATTGAGCTCATCTTAGGATAATTGCGTTAGCT 103251 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 ||||||||||||| || ||||||||||||||||| |||||||| || || Sbjct 103250 TTTAACAGATGTGTCGTCCCAGCCAAACTCCCCATCTGACAATATCTTC 103202 >seq8 Length=22711823 Score = 82.4 bits (90), Expect = 2e-13 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCG-AA 232 |||| |||| || ||||||||| |||| ||| ||||||||||||||||| ||||| Sbjct 9570103 TCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCGTTT 9570162 Query 233 ACGGCTCCCACTTATTCTACAC 254 |||||||||||||| |||||| Sbjct 9570163 CCGGCTCCCACTTATACTACAC 9570184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635120790912