Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12]
4,844 sequences; 327,829,540 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq4844 123 5e-26
seq9 116 8e-24
seq1 104 5e-20
>seq4844
Length=160129
Score = 123 bits (136), Expect = 5e-26
Identities = 194/279 (70%), Gaps = 18/279 (6%)
Strand=Plus/Minus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| || ||| || |
Sbjct 105532 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 105484
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| || ||| | |||||||||| || | |||| | ||||| ||| |||||
Sbjct 105483 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 105431
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | ||| |||| || ||| |||||| || ||||| ||||||||||||||||||
Sbjct 105430 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 105371
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| ||
Sbjct 105370 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 105311
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| | | || ||| || || || | || |||| |||||
Sbjct 105310 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 105272
Score = 123 bits (136), Expect = 5e-26
Identities = 194/279 (70%), Gaps = 18/279 (6%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| || ||| || |
Sbjct 142342 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 142390
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| || ||| | |||||||||| || | |||| | ||||| ||| |||||
Sbjct 142391 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 142443
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | ||| |||| || ||| |||||| || ||||| ||||||||||||||||||
Sbjct 142444 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 142503
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| ||
Sbjct 142504 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 142563
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| | | || ||| || || || | || |||| |||||
Sbjct 142564 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 142602
>seq9
Length=18450785
Score = 116 bits (128), Expect = 8e-24
Identities = 145/199 (73%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164
||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| ||
Sbjct 11485859 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 11485918
Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224
|||||||| ||||| ||||| || |||||||||||| ||| ||||| || | |||
Sbjct 11485919 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 11485978
Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284
||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| ||
Sbjct 11485979 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTAC 11486038
Query 285 GCATCCCCATCGTACACCG 303
||| | |||| ||| ||
Sbjct 11486039 GCAGGCTCATCAAACAGCG 11486057
>seq1
Length=28801852
Score = 104 bits (114), Expect = 5e-20
Identities = 117/152 (77%), Gaps = 6/152 (4%)
Strand=Plus/Minus
Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTAC--TTGGCTGGTTCAGAC 138
|||||||||| || | |||||| ||||| ||| |||| || || ||| |||| |
Sbjct 12824695 AAAAGAAGTTCACGAACCGTAGG-CCTTCTACCTCCACGATATATTTTTCTG--TCAGGC 12824639
Query 139 TCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTC 198
| ||| |||||| || ||||| ||||| |||||||||||||||||||| |||||||
Sbjct 12824638 TTTCGCCCATTGCGGAAAATTCCCCACTGTTGCCTCCCGTAGGAGTTTGGGTTGTGTCTC 12824579
Query 199 AGTTCCAATGTGGGGGACCTTCCTCTCAGAAC 230
||| ||| ||||| || | ||||||| ||||
Sbjct 12824578 AGTCCCAGTGTGGCTGATCATCCTCTC-GAAC 12824548
Score = 104 bits (114), Expect = 5e-20
Identities = 117/152 (77%), Gaps = 6/152 (4%)
Strand=Plus/Minus
Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTAC--TTGGCTGGTTCAGAC 138
|||||||||| || | |||||| ||||| ||| |||| || || ||| |||| |
Sbjct 12834242 AAAAGAAGTTCACGAACCGTAGG-CCTTCTACCTCCACGATATATTTTTCTG--TCAGGC 12834186
Query 139 TCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTC 198
| ||| |||||| || ||||| ||||| |||||||||||||||||||| |||||||
Sbjct 12834185 TTTCGCCCATTGCGGAAAATTCCCCACTGTTGCCTCCCGTAGGAGTTTGGGTTGTGTCTC 12834126
Query 199 AGTTCCAATGTGGGGGACCTTCCTCTCAGAAC 230
||| ||| ||||| || | ||||||| ||||
Sbjct 12834125 AGTCCCAGTGTGGCTGATCATCCTCTC-GAAC 12834095
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1068748227328
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |