Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq58 105 1e-20 seq7 105 1e-20 seq20 102 1e-19 seq85 80.6 4e-13 >seq58 Length=473374 Score = 105 bits (116), Expect = 1e-20 Identities = 100/125 (80%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 412418 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 412361 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 412360 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 412301 Query 121 GAACG 125 || || Sbjct 412300 GAGCG 412296 >seq7 Length=32205869 Score = 105 bits (116), Expect = 1e-20 Identities = 100/125 (80%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 23022527 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 23022584 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 23022585 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 23022644 Query 121 GAACG 125 || || Sbjct 23022645 GAGCG 23022649 >seq20 Length=1106287 Score = 102 bits (112), Expect = 1e-19 Identities = 99/125 (79%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 193900 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 193957 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||| | || | Sbjct 193958 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATTCGGGCTA 194017 Query 121 GAACG 125 || || Sbjct 194018 GAGCG 194022 >seq85 Length=264492 Score = 80.6 bits (88), Expect = 4e-13 Identities = 80/101 (79%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 7 GAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCG 66 ||||||||| || ||| | | ||||||| | ||| || ||| || ||||| |||| Sbjct 144284 GAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCG 144227 Query 67 AAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTC 107 |||||||| | ||||||||||| ||||||||||||||||| Sbjct 144226 AAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTC 144186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819161558016