Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq124 590 2e-166 seq20 590 2e-166 seq7 590 2e-166 seq3 356 7e-96 seq58 255 2e-65 seq12 239 1e-60 seq18 223 1e-55 seq6 78.8 3e-12 >seq124 Length=178874 Score = 590 bits (654), Expect = 2e-166 Identities = 444/513 (87%), Gaps = 13/513 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| || | |||||| |||| |||||||||||||||||| Sbjct 144694 GTACTCATTCCAATTACCAGACTCATA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 144752 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 144753 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 144812 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 144813 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 144872 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 144873 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCA 144932 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293 | |||| |||||| ||| |||||| |||||||| || |||| | | || | Sbjct 144933 CGGTGGCCTTGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAGAGCCCG 144990 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| ||| ||||| Sbjct 144991 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGGTGCACGTATT 145050 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| |||| || ||| |||||| |||| |||||||| Sbjct 145051 AGCTCTAGAATTACTACGGTTATCCGAGTAGCAA-ATACCATCAAACAAACTATAACTGA 145109 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 145110 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCT 145169 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 145170 TAATCTTTGAGACAAGCATATGACTACTGGCAG 145202 >seq20 Length=1106287 Score = 590 bits (654), Expect = 2e-166 Identities = 444/513 (87%), Gaps = 13/513 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| || | |||||| |||| |||||||||||||||||| Sbjct 188861 GTACTCATTCCAATTACCAGACTCATA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 188803 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 188802 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 188743 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 188742 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 188683 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 188682 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCA 188623 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293 | |||| |||||| ||| |||||| |||||||| || |||| | | || | Sbjct 188622 CGGTGGCCTTGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAGAGCCCG 188565 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| ||| ||||| Sbjct 188564 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGGTGCACGTATT 188505 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| |||| || ||| |||||| |||| |||||||| Sbjct 188504 AGCTCTAGAATTACTACGGTTATCCGAGTAGCAA-ATACCATCAAACAAACTATAACTGA 188446 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 188445 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCT 188386 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 188385 TAATCTTTGAGACAAGCATATGACTACTGGCAG 188353 Score = 210 bits (232), Expect = 7e-52 Identities = 155/178 (87%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 328 GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAG 387 ||||||||||||| ||| ||||||||||||||||||| |||||||||| |||| || Sbjct 187062 GAAGTCGGGGTTTGGTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCAAA 187003 Query 388 GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT 447 ||| |||||| |||| ||||||||||||||||||||||||||||||||| || | ||| Sbjct 187002 -TACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTCTGAATT 186944 Query 448 GCTT-ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||| ||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 186943 AGTTCATACTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGAGTACTTGCAG 186886 >seq7 Length=32205869 Score = 590 bits (654), Expect = 2e-166 Identities = 444/513 (87%), Gaps = 13/513 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| || | |||||| |||| |||||||||||||||||| Sbjct 25305473 GTACTCATTCCAATTACCAGACTCATA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 25305531 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 25305532 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 25305591 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 25305592 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 25305651 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 25305652 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCA 25305711 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293 | |||| |||||| ||| |||||| |||||||| || |||| | | || | Sbjct 25305712 CGGTGGCCTTGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAGAGCCCG 25305769 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| ||| ||||| Sbjct 25305770 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGGTGCACGTATT 25305829 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| |||| || ||| |||||| |||| |||||||| Sbjct 25305830 AGCTCTAGAATTACTACGGTTATCCGAGTAGCAA-ATACCATCAAACAAACTATAACTGA 25305888 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 25305889 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCT 25305948 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 25305949 TAATCTTTGAGACAAGCATATGACTACTGGCAG 25305981 Score = 572 bits (634), Expect = 5e-161 Identities = 440/513 (86%), Gaps = 13/513 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| || | ||| || |||| |||||||||||||||||| Sbjct 25341517 GTACTCATTCCAATTACCAGACTCATA-GAGTCCGGTATTGTTATTTATTGTCACTACCT 25341575 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 25341576 CCCCGTGTCCGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 25341635 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||| |||||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 25341636 TCTCAGTCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 25341695 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||||| ||||||||||||||||||||||||||| | |||||||| Sbjct 25341696 GGCCTCTATCCTACCATCGCAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCA 25341755 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293 | |||| |||||| ||| |||||| |||||||| || |||| | | || | Sbjct 25341756 CGGTGGCCTTGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAGAGCCCG 25341813 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| |||||| |||||| ||||||||| Sbjct 25341814 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCAGGGTTTGGCGCATGTATT 25341873 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| |||| || ||| |||||| |||| |||||||| Sbjct 25341874 AGCTCTAGAATTACTACGGTTATCCGAGTAGCAA-ATACCATCAAACAAACTATAACTGA 25341932 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 25341933 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCT 25341992 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||| || Sbjct 25341993 TAATCTTTGAGACAAGCATATGACTACTGGTAG 25342025 >seq3 Length=28715784 Score = 356 bits (394), Expect = 7e-96 Identities = 248/279 (89%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| || | |||||| |||| |||||||||||||||||| Sbjct 976274 GTACTCATTCCAATTACCAGACTCATA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 976332 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 976333 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCGTGGATGTGGTAGCCGTT 976392 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||| ||||||||||||||||| |||| |||||| ||||||||| Sbjct 976393 TCTCAGGCTCCCTCTCCAGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 976452 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||| |||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 976453 GGCCTCTAGCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATCCGTCGCCGGCA 976512 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA 278 | |||| |||||| ||| |||||| |||||||| || Sbjct 976513 CGGTGGCCTTGCGATCCGTCGAGTTATCATGAATCATCA 976551 >seq58 Length=473374 Score = 255 bits (282), Expect = 2e-65 Identities = 167/183 (91%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| || | |||||| |||| |||||||||||||||||| Sbjct 270498 GTACTCATTCCAATTACCAGACTCATA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 270556 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 270557 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 270616 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||| ||||||||||||||||| |||| |||||| ||||||||| Sbjct 270617 TCTCAGGCTCCCTCTCCAGAATCGAACCCTAATTCTCCGTCACCCGTCAGCACCATGGTA 270676 Query 181 GGC 183 ||| Sbjct 270677 GGC 270679 Score = 251 bits (278), Expect = 2e-64 Identities = 181/205 (88%), Gaps = 3/205 (1%) Strand=Plus/Plus Query 302 TTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||| || ||||||| ||||||||||||| ||| ||||||||||||| Sbjct 270702 TTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGGTGCACGTATTAGCTCTAG 270761 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||| |||||||||| |||| || ||| |||||| |||| |||||||||||||||| Sbjct 270762 AATTACTACGGTTATCCGAGTAGCAAA-TACCATCAAACAAACTATAACTGATTTAATGA 270820 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTT 479 ||||||||||||||||| || | ||| || ||||||| |||||||||||||||||||| Sbjct 270821 GCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCTTAATCTTT 270880 Query 480 GAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| Sbjct 270881 GAGACAAGCATATGACTACTGGCAG 270905 >seq12 Length=2762994 Score = 239 bits (264), Expect = 1e-60 Identities = 174/198 (88%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 309 TAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACC 367 |||||||| || ||||||| ||||||||||||| ||| ||||||||||||||||||| Sbjct 675422 TAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGGTGCACGTATTAGCTCTAGAATTACT 675481 Query 368 ACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTC 427 |||||||||| |||| || ||| |||||| |||| ||||||||||||||||||||||| Sbjct 675482 ACGGTTATCCGAGTAGCAAA-TACCATCAAACAAACTATAACTGATTTAATGAGCCATTC 675540 Query 428 GCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTTGAGACAA 486 |||||||||| || | ||| || ||||||| ||||||||||||||||||||||||||| Sbjct 675541 GCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCTTAATCTTTGAGACAA 675600 Query 487 GCATATGACTACTGGCAG 504 |||||||||||||||||| Sbjct 675601 GCATATGACTACTGGCAG 675618 >seq18 Length=1204759 Score = 223 bits (246), Expect = 1e-55 Identities = 205/253 (81%), Gaps = 11/253 (4%) Strand=Plus/Plus Query 174 CATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATC 233 ||||||||||| |||||||||||||||||||||||||||||||||||||||||| | || Sbjct 766444 CATGGTAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTC 766503 Query 234 GCCGGCTC-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAA 290 |||||| | |||| |||||| ||| |||||| |||||||| || |||| | | | Sbjct 766504 GCCGGCACGGTGGCCTTGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCA 766561 Query 291 G----GGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGC 345 | |||| | ||||||||||||||| || |||| || ||||||||||||| || Sbjct 766562 GAGCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTACCAGAAGTCGGGGTTTGGTGC 766621 Query 346 ATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGA 405 | |||||||||| |||||||| |||||||||| |||| || ||| |||||| |||| | Sbjct 766622 ACGTATTAGCTCGAGAATTACTACGGTTATCCGAGTAGCAA-ATACCATCAAACAAACTA 766680 Query 406 TAACTGATTTAAT 418 ||||||||||||| Sbjct 766681 TAACTGATTTAAT 766693 >seq6 Length=21175815 Score = 78.8 bits (86), Expect = 3e-12 Identities = 45/46 (98%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 177 GGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 11870858 GGTAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 11870813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510326836224