Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq206697 201 2e-49 seq213222 197 3e-48 seq152413 196 9e-48 seq164654 134 3e-29 seq193326 125 1e-26 seq208757 102 2e-19 seq198914 102 2e-19 seq237902 93.3 8e-17 seq163170 82.4 1e-13 seq212791 78.8 2e-12 seq233390 75.2 2e-11 >seq206697 Length=2363 Score = 201 bits (222), Expect = 2e-49 Identities = 245/331 (74%), Gaps = 5/331 (2%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||||||| |||||| ||| |||||||| | || |||||| Sbjct 1235 CCCGATAAGGGGAGTGAAATAGAACCTGAAACCGAATGCCTACAAACAGTGGGAGCCTCT 1176 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | || |||||| |||| ||| ||| |||||| | | ||| |||||| | || ||| || Sbjct 1175 TTATGGGGTGACCGCGTACCTCTTGTATAATGGGTCAGCGACTTAGTCTT-ACGAGCAAG 1117 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 ||||| | ||| ||| || || ||||||||| || ||||||||| |||| Sbjct 1116 CTTAAGCCGAT-AGGTG---TAGGCGCAGCGAAAGCGAGTCTGAACAGGGCGTTCAGTTC 1061 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 || | ||||| ||||||| |||||||| ||| | |||| ||||| | |||||| | Sbjct 1060 GTAGGATTAGACCCGAAACCGGGTGATCTAGCCATGGTCAGGCTGAAGGTGGGGTAACAC 1001 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 |||||| |||||| | | |||||||||| | | |||||| | || ||||||| Sbjct 1000 CCACTGGAGGGCCGAACTAATCACCGTTGAAAAGGTGTTGGATGAGCTGTGGCTAGGGGT 941 Query 304 GAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||| |||||||||| || Sbjct 940 GAAAGGCCAATCAAACTCGGAAATAGCTGGT 910 >seq213222 Length=619 Score = 197 bits (218), Expect = 3e-48 Identities = 248/333 (74%), Gaps = 8/333 (2%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||||||| |||||| ||| || ||||||| || ||||| | Sbjct 27 CCCGATGAGGGGAGTGAAATAGAACCTGAAACCGAATGCTTACAAGCAGTGGGAGCGGCC 86 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | | ||||| |||| ||| ||| |||||| | | ||| |||||| | || ||| || Sbjct 87 TTGAGCCGTGACCGCGTACCTCTTGTATAATGGGTCAGCGACTTAGTCTT-ACGAGCAAG 145 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGAC-GAGTT 182 ||||| | |||| || || || ||||||||| || || |||||| ||||| Sbjct 146 CTTAAGCCGAT-AGGCGG---AGGCGTAGCGAAAGCGAGTCTGAATAGGGCGCTTGAGTT 201 Query 183 GGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAG-TCGCGGTAAC 241 || | ||||| ||||||| |||||||| ||| | |||||||||| ||| |||||| Sbjct 202 CGTAGGATTAGACCCGAAACCGGGTGATCTAGCCATGGACAGGTTGAAGGTCG-GGTAAC 260 Query 242 GCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGG 301 | | |||||||||||||| | | |||||||||| | |||||| | || ||||| Sbjct 261 ACCGGCTGGAGGACCGAACCAATTACCGTTGAAAAGGTACTGGATGATCTGTGGCTAGGG 320 Query 302 GTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||||| |||||||||| || Sbjct 321 GTGAAAGGCCAATCAAACTCGGAAATAGCTGGT 353 >seq152413 Length=432 Score = 196 bits (216), Expect = 9e-48 Identities = 249/342 (73%), Gaps = 22/342 (6%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC-----GAGTG 65 ||||| |||||||||| |||||| ||| |||||||| || |||||| | ||| Sbjct 60 AGGGGAGTGAAATAGAACCTGAAACCGTTTGCCTACAAAAAGTGGGAGCCCTATGGCGTG 119 Query 66 A-TTCGG------------TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCG 112 ||||| |||| |||| |||||||||||||||| | ||||||| | Sbjct 120 TCTTCGGACACGCAATGGGTGACTGCGTACCTTTTGCATAATGAGTCCGCGAGTTAAG-G 178 Query 113 TCACCAGCGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGG 172 || |||| |||||||| || ||| |||||| || ||||||||| | || ||| Sbjct 179 TCGGCAGCAAGGTTAAGCCGTTTAGGTG---TAGCCGTAGCGAAAGCGAGTCCGAATAGG 235 Query 173 GCGACGAGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGT 232 ||| | ||||| ||| ||||| ||||||| |||||||||| | | |||| |||| Sbjct 236 GCGTCCAGTTGCCGGCTTTAGACCCGAAACCGAGTGATCTACCTATGGCCAGGGTGAAAC 295 Query 233 CGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCG 292 |||||| ||| |||||| |||||||| || |||||||| || ||||||| | Sbjct 296 TACGGTAAAACGTAGTGGAGGCCCGAACCGCAGAAGGTTGAAAACTTCCCGGATGAGCTG 355 Query 293 CGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||||||||||||| ||| |||||| || Sbjct 356 TGGGTAGGGGTGAAAGGCCAATCAAACTCGGAGATAGCTGGT 397 >seq164654 Length=1436 Score = 134 bits (148), Expect = 3e-29 Identities = 231/330 (70%), Gaps = 13/330 (4%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGC-CGAG--TGAT 67 ||||| ||||||||| |||||| ||| | || ||||||| || |||| | || | | Sbjct 1149 AGGGGAGTGAAATAGTACCTGAAACCGTGTGCTTACAAGCAGTGGGAGGTCAAGGTTCGT 1090 Query 68 TCGG--TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGT 125 | | |||| ||||||||||||||||||||||| | ||| | | ||||| || |||| Sbjct 1089 CCTGACTGACCGCGTGCCTTTTGCATAATGAGCCGGCTAGTGAAT-GTCACAGGCAAGGT 1031 Query 126 TAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGT 185 ||| | | || |||||||| ||||||||| | ||| |||||| ||| || Sbjct 1030 TAAACGATAA------GTGAGCCGAAGCGAAAGCGAGTCCTAATAGGGCGTTTAGTCTGT 977 Query 186 GGCGCTAG-ACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCG 244 || | | ||| ||| | ||||||| || | |||| ||||| |||||| | Sbjct 976 GGTATTCGGACGTGAAGCGAGATGATCTATGCATGGCCAGGCTGAAGCGTGGGTAACACC 917 Query 245 TGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTG 304 |||||| ||||||| || |||||||| || |||||| | | |||||||| Sbjct 916 ACGTGGAGGGCCGAACCAGTTTGGGTTGAAAACCATTTGGATGAGCTGTGCATAGGGGTG 857 Query 305 AAAGGCCAATCAAACTGGGAAATAGCTCGT 334 |||||| ||||||| | | ||||||||| Sbjct 856 AAAGGCTAATCAAATTTCGTGATAGCTCGT 827 >seq193326 Length=1315 Score = 125 bits (138), Expect = 1e-26 Identities = 235/343 (69%), Gaps = 27/343 (8%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAG--------CCGA 62 ||||| ||||||||| |||||| ||| | |||||||| || |||| | || Sbjct 34 AGGGGAGTGAAATAGTACCTGAAACCGTATGTCTACAAGCAGTGGGAGGGCTATGCCGGA 93 Query 63 GT--GATTCGG------TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTC 114 | | |||| |||| ||||||||||||||||||||||| | ||||| || || Sbjct 94 CTTCGGGTCGGAATGCCTGACCGCGTGCCTTTTGCATAATGAGCCGGCTAGTTACTC-TC 152 Query 115 ACCAGCGAGGTTAAGGGCTT--CAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGG 172 | || ||| ||| || ||| ||||| || ||||||||| || || ||| Sbjct 153 AGGGGCAAGGCGAAGCAATTTGCAG-------AGCCGTAGCGAAAGCGAGTCTGAAAAGG 205 Query 173 GCGAC-GAGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAG 231 |||| |||| | ||| || ||||||| | ||||||| || | |||| |||| Sbjct 206 GCGAATGAGTCGCTGGGAGTACACGCGAAGCGGGATGATCTAGGCATGGCCAGGATGAAA 265 Query 232 TCGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTC 291 | |||||| | | |||||| ||||||| || |||||||| | |||||| Sbjct 266 CCTGGGTAACACCAGGTGGAGGTCCGAACCAGTGTTGGTTGAAAACAGCTTGGATGAGCT 325 Query 292 GCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 | | |||||||||||||||||||||| | | ||||||||| Sbjct 326 GTGCCTAGGGGTGAAAGGCCAATCAAATTCCGTTATAGCTCGT 368 >seq208757 Length=368 Score = 102 bits (112), Expect = 2e-19 Identities = 103/129 (80%), Gaps = 4/129 (3%) Strand=Plus/Minus Query 208 GATCTACCCACGAGCAGGTTGAAGTCGCG-GTAAC-GCGTGATGGAGGACCGAACCGGTA 265 |||||||| | | |||||||||| || | ||||| ||| | ||||||||||||||| | Sbjct 368 GATCTACCTATGTCCAGGTTGAAG-CGTGCGTAACAGCGCG-TGGAGGACCGAACCGTTG 311 Query 266 AACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAA 325 |||||||| |||||||| | | |||||||||||||||||||||||| || ||| Sbjct 310 TGGGTTGAAAACCGCTCGGATGAGTTGTGGGTAGGGGTGAAAGGCCAATCAAGCTCGGAG 251 Query 326 ATAGCTCGT 334 |||||| || Sbjct 250 ATAGCTGGT 242 >seq198914 Length=2821 Score = 102 bits (112), Expect = 2e-19 Identities = 174/247 (70%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 |||| |||| |||||||||||||| ||| ||||||| || ||| || ||||||| | Sbjct 1370 TGACCGCGTACCTTTTGCATAATGGGCCAGCGAGTTA-TCTTCAGTGGCTAGGTTAA-GC 1313 Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCT 191 | || | |||||| || ||||||||| || ||| ||||| ||| | ||| | | Sbjct 1312 CGAGAGAGGTG-TAGCCGTAGCGAAAGCGAGTCTGAACGGGGCGTTCAGTCGCTGGAGAT 1254 Query 192 AGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCG-GTAACGCGTGATGG 250 |||| |||| | |||||| ||| || |||| ||||| | | | || | ||| Sbjct 1253 AGACCCGAAGCGAGTCGATCTATCCATGACCAGGGTGAAGCAGAGAGAAAACCTCCGTGG 1194 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||| ||| |||||| | |||||||| | |||||||| | | || | || | ||||| | Sbjct 1193 AGGCCCGCACCGGTTAGGGTTGAAAACCTATCGGATGAGTTGTGGATCGGAGCGAAAGAC 1134 Query 311 CAATCAA 317 || ||| Sbjct 1133 TAAACAA 1127 >seq237902 Length=373 Score = 93.3 bits (102), Expect = 8e-17 Identities = 112/150 (75%), Gaps = 12/150 (8%) Strand=Plus/Minus Query 1 TAGCCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC 60 || |||| | ||||| ||||||||| |||||| ||| | || ||||||||| |||| Sbjct 151 TACCCCGGG-AGGGGAGTGAAATAGTACCTGAAACCGTGTGCTGACAAGCGGTAGGAGG- 94 Query 61 GAGTGAT--TCGG------TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCG 112 || || |||| |||| ||||||||||||||| |||| || |||||| || Sbjct 93 --GTCATCTTCGGATGGCCTGACTGCGTGCCTTTTGCATTATGATCCGGCGAGTTGCTCT 36 Query 113 TCACCAGCGAGGTTAAGGGCTTCAGGCCCG 142 |||| || ||||||||| ||||||| ||| Sbjct 35 TCACGTGCAAGGTTAAGGCCTTCAGGGCCG 6 >seq163170 Length=29127 Score = 82.4 bits (90), Expect = 1e-13 Identities = 206/308 (67%), Gaps = 5/308 (2%) Strand=Plus/Minus Query 12 GGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71 |||| |||||||||| | |||| ||| || ||||| || |||| | | | Sbjct 23752 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCGGGGCTC 23693 Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 |||| |||||||| ||| | |||||||| ||| | | | | || || ||||||||| Sbjct 23692 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 23634 Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCT 191 | ||| ||||| || ||||||||| ||| | ||||| | || || | Sbjct 23633 AACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTTAT 23578 Query 192 AGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGA 251 ||| |||| | |||||||| ||| || |||| ||||| ||| | | |||| Sbjct 23577 GGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGA 23518 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 || |||||||| | |||||| | | ||||||| | | || ||||||||||| ||| Sbjct 23517 GGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCC 23458 Query 312 AATCAAAC 319 | || ||| Sbjct 23457 ACTCGAAC 23450 >seq212791 Length=233936 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 195468 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 195527 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 195528 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 195587 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 195588 AACCAAGATCGGATATAGCTGGT 195610 >seq233390 Length=250 Score = 75.2 bits (82), Expect = 2e-11 Identities = 68/86 (79%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308 ||||| |||||||||| |||||||||| |||||||| | | || |||||||||||| Sbjct 250 GGAGGGCCGAACCGGTGTCCGTTGAAAAGGCCTCGGATGAGTTGTGGCTAGGGGTGAAAG 191 Query 309 GCCAATCAAACTGGGAAATAGCTCGT 334 || |||||| ||| |||||| || Sbjct 190 GCTAATCAAGGCTGGAGATAGCTGGT 165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 970479988736