Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= AAMG01000140.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
seq206697 201 2e-49
seq213222 197 3e-48
seq152413 196 9e-48
seq164654 134 3e-29
seq193326 125 1e-26
seq208757 102 2e-19
seq198914 102 2e-19
seq237902 93.3 8e-17
seq163170 82.4 1e-13
seq212791 78.8 2e-12
seq233390 75.2 2e-11
>seq206697
Length=2363
Score = 201 bits (222), Expect = 2e-49
Identities = 245/331 (74%), Gaps = 5/331 (2%)
Strand=Plus/Minus
Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63
||||| ||||| |||||||||| |||||| ||| |||||||| | || ||||||
Sbjct 1235 CCCGATAAGGGGAGTGAAATAGAACCTGAAACCGAATGCCTACAAACAGTGGGAGCCTCT 1176
Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123
| || |||||| |||| ||| ||| |||||| | | ||| |||||| | || ||| ||
Sbjct 1175 TTATGGGGTGACCGCGTACCTCTTGTATAATGGGTCAGCGACTTAGTCTT-ACGAGCAAG 1117
Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183
||||| | ||| ||| || || ||||||||| || ||||||||| ||||
Sbjct 1116 CTTAAGCCGAT-AGGTG---TAGGCGCAGCGAAAGCGAGTCTGAACAGGGCGTTCAGTTC 1061
Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243
|| | ||||| ||||||| |||||||| ||| | |||| ||||| | |||||| |
Sbjct 1060 GTAGGATTAGACCCGAAACCGGGTGATCTAGCCATGGTCAGGCTGAAGGTGGGGTAACAC 1001
Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303
|||||| |||||| | | |||||||||| | | |||||| | || |||||||
Sbjct 1000 CCACTGGAGGGCCGAACTAATCACCGTTGAAAAGGTGTTGGATGAGCTGTGGCTAGGGGT 941
Query 304 GAAAGGCCAATCAAACTGGGAAATAGCTCGT 334
||||||||||||||||| |||||||||| ||
Sbjct 940 GAAAGGCCAATCAAACTCGGAAATAGCTGGT 910
>seq213222
Length=619
Score = 197 bits (218), Expect = 3e-48
Identities = 248/333 (74%), Gaps = 8/333 (2%)
Strand=Plus/Plus
Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63
||||| ||||| |||||||||| |||||| ||| || ||||||| || ||||| |
Sbjct 27 CCCGATGAGGGGAGTGAAATAGAACCTGAAACCGAATGCTTACAAGCAGTGGGAGCGGCC 86
Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123
| | ||||| |||| ||| ||| |||||| | | ||| |||||| | || ||| ||
Sbjct 87 TTGAGCCGTGACCGCGTACCTCTTGTATAATGGGTCAGCGACTTAGTCTT-ACGAGCAAG 145
Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGAC-GAGTT 182
||||| | |||| || || || ||||||||| || || |||||| |||||
Sbjct 146 CTTAAGCCGAT-AGGCGG---AGGCGTAGCGAAAGCGAGTCTGAATAGGGCGCTTGAGTT 201
Query 183 GGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAG-TCGCGGTAAC 241
|| | ||||| ||||||| |||||||| ||| | |||||||||| ||| ||||||
Sbjct 202 CGTAGGATTAGACCCGAAACCGGGTGATCTAGCCATGGACAGGTTGAAGGTCG-GGTAAC 260
Query 242 GCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGG 301
| | |||||||||||||| | | |||||||||| | |||||| | || |||||
Sbjct 261 ACCGGCTGGAGGACCGAACCAATTACCGTTGAAAAGGTACTGGATGATCTGTGGCTAGGG 320
Query 302 GTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334
||||||||||||||||||| |||||||||| ||
Sbjct 321 GTGAAAGGCCAATCAAACTCGGAAATAGCTGGT 353
>seq152413
Length=432
Score = 196 bits (216), Expect = 9e-48
Identities = 249/342 (73%), Gaps = 22/342 (6%)
Strand=Plus/Plus
Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC-----GAGTG 65
||||| |||||||||| |||||| ||| |||||||| || |||||| | |||
Sbjct 60 AGGGGAGTGAAATAGAACCTGAAACCGTTTGCCTACAAAAAGTGGGAGCCCTATGGCGTG 119
Query 66 A-TTCGG------------TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCG 112
||||| |||| |||| |||||||||||||||| | ||||||| |
Sbjct 120 TCTTCGGACACGCAATGGGTGACTGCGTACCTTTTGCATAATGAGTCCGCGAGTTAAG-G 178
Query 113 TCACCAGCGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGG 172
|| |||| |||||||| || ||| |||||| || ||||||||| | || |||
Sbjct 179 TCGGCAGCAAGGTTAAGCCGTTTAGGTG---TAGCCGTAGCGAAAGCGAGTCCGAATAGG 235
Query 173 GCGACGAGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGT 232
||| | ||||| ||| ||||| ||||||| |||||||||| | | |||| ||||
Sbjct 236 GCGTCCAGTTGCCGGCTTTAGACCCGAAACCGAGTGATCTACCTATGGCCAGGGTGAAAC 295
Query 233 CGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCG 292
|||||| ||| |||||| |||||||| || |||||||| || ||||||| |
Sbjct 296 TACGGTAAAACGTAGTGGAGGCCCGAACCGCAGAAGGTTGAAAACTTCCCGGATGAGCTG 355
Query 293 CGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334
||||||||||||||||||||||||||| ||| |||||| ||
Sbjct 356 TGGGTAGGGGTGAAAGGCCAATCAAACTCGGAGATAGCTGGT 397
>seq164654
Length=1436
Score = 134 bits (148), Expect = 3e-29
Identities = 231/330 (70%), Gaps = 13/330 (4%)
Strand=Plus/Minus
Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGC-CGAG--TGAT 67
||||| ||||||||| |||||| ||| | || ||||||| || |||| | || | |
Sbjct 1149 AGGGGAGTGAAATAGTACCTGAAACCGTGTGCTTACAAGCAGTGGGAGGTCAAGGTTCGT 1090
Query 68 TCGG--TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGT 125
| | |||| ||||||||||||||||||||||| | ||| | | ||||| || ||||
Sbjct 1089 CCTGACTGACCGCGTGCCTTTTGCATAATGAGCCGGCTAGTGAAT-GTCACAGGCAAGGT 1031
Query 126 TAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGT 185
||| | | || |||||||| ||||||||| | ||| |||||| ||| ||
Sbjct 1030 TAAACGATAA------GTGAGCCGAAGCGAAAGCGAGTCCTAATAGGGCGTTTAGTCTGT 977
Query 186 GGCGCTAG-ACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCG 244
|| | | ||| ||| | ||||||| || | |||| ||||| |||||| |
Sbjct 976 GGTATTCGGACGTGAAGCGAGATGATCTATGCATGGCCAGGCTGAAGCGTGGGTAACACC 917
Query 245 TGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTG 304
|||||| ||||||| || |||||||| || |||||| | | ||||||||
Sbjct 916 ACGTGGAGGGCCGAACCAGTTTGGGTTGAAAACCATTTGGATGAGCTGTGCATAGGGGTG 857
Query 305 AAAGGCCAATCAAACTGGGAAATAGCTCGT 334
|||||| ||||||| | | |||||||||
Sbjct 856 AAAGGCTAATCAAATTTCGTGATAGCTCGT 827
>seq193326
Length=1315
Score = 125 bits (138), Expect = 1e-26
Identities = 235/343 (69%), Gaps = 27/343 (8%)
Strand=Plus/Plus
Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAG--------CCGA 62
||||| ||||||||| |||||| ||| | |||||||| || |||| | ||
Sbjct 34 AGGGGAGTGAAATAGTACCTGAAACCGTATGTCTACAAGCAGTGGGAGGGCTATGCCGGA 93
Query 63 GT--GATTCGG------TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTC 114
| | |||| |||| ||||||||||||||||||||||| | ||||| || ||
Sbjct 94 CTTCGGGTCGGAATGCCTGACCGCGTGCCTTTTGCATAATGAGCCGGCTAGTTACTC-TC 152
Query 115 ACCAGCGAGGTTAAGGGCTT--CAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGG 172
| || ||| ||| || ||| ||||| || ||||||||| || || |||
Sbjct 153 AGGGGCAAGGCGAAGCAATTTGCAG-------AGCCGTAGCGAAAGCGAGTCTGAAAAGG 205
Query 173 GCGAC-GAGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAG 231
|||| |||| | ||| || ||||||| | ||||||| || | |||| ||||
Sbjct 206 GCGAATGAGTCGCTGGGAGTACACGCGAAGCGGGATGATCTAGGCATGGCCAGGATGAAA 265
Query 232 TCGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTC 291
| |||||| | | |||||| ||||||| || |||||||| | ||||||
Sbjct 266 CCTGGGTAACACCAGGTGGAGGTCCGAACCAGTGTTGGTTGAAAACAGCTTGGATGAGCT 325
Query 292 GCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334
| | |||||||||||||||||||||| | | |||||||||
Sbjct 326 GTGCCTAGGGGTGAAAGGCCAATCAAATTCCGTTATAGCTCGT 368
>seq208757
Length=368
Score = 102 bits (112), Expect = 2e-19
Identities = 103/129 (80%), Gaps = 4/129 (3%)
Strand=Plus/Minus
Query 208 GATCTACCCACGAGCAGGTTGAAGTCGCG-GTAAC-GCGTGATGGAGGACCGAACCGGTA 265
|||||||| | | |||||||||| || | ||||| ||| | ||||||||||||||| |
Sbjct 368 GATCTACCTATGTCCAGGTTGAAG-CGTGCGTAACAGCGCG-TGGAGGACCGAACCGTTG 311
Query 266 AACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAA 325
|||||||| |||||||| | | |||||||||||||||||||||||| || |||
Sbjct 310 TGGGTTGAAAACCGCTCGGATGAGTTGTGGGTAGGGGTGAAAGGCCAATCAAGCTCGGAG 251
Query 326 ATAGCTCGT 334
|||||| ||
Sbjct 250 ATAGCTGGT 242
>seq198914
Length=2821
Score = 102 bits (112), Expect = 2e-19
Identities = 174/247 (70%), Gaps = 4/247 (2%)
Strand=Plus/Minus
Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131
|||| |||| |||||||||||||| ||| ||||||| || ||| || ||||||| |
Sbjct 1370 TGACCGCGTACCTTTTGCATAATGGGCCAGCGAGTTA-TCTTCAGTGGCTAGGTTAA-GC 1313
Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCT 191
| || | |||||| || ||||||||| || ||| ||||| ||| | ||| | |
Sbjct 1312 CGAGAGAGGTG-TAGCCGTAGCGAAAGCGAGTCTGAACGGGGCGTTCAGTCGCTGGAGAT 1254
Query 192 AGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCG-GTAACGCGTGATGG 250
|||| |||| | |||||| ||| || |||| ||||| | | | || | |||
Sbjct 1253 AGACCCGAAGCGAGTCGATCTATCCATGACCAGGGTGAAGCAGAGAGAAAACCTCCGTGG 1194
Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310
||| ||| |||||| | |||||||| | |||||||| | | || | || | ||||| |
Sbjct 1193 AGGCCCGCACCGGTTAGGGTTGAAAACCTATCGGATGAGTTGTGGATCGGAGCGAAAGAC 1134
Query 311 CAATCAA 317
|| |||
Sbjct 1133 TAAACAA 1127
>seq237902
Length=373
Score = 93.3 bits (102), Expect = 8e-17
Identities = 112/150 (75%), Gaps = 12/150 (8%)
Strand=Plus/Minus
Query 1 TAGCCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC 60
|| |||| | ||||| ||||||||| |||||| ||| | || ||||||||| ||||
Sbjct 151 TACCCCGGG-AGGGGAGTGAAATAGTACCTGAAACCGTGTGCTGACAAGCGGTAGGAGG- 94
Query 61 GAGTGAT--TCGG------TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCG 112
|| || |||| |||| ||||||||||||||| |||| || |||||| ||
Sbjct 93 --GTCATCTTCGGATGGCCTGACTGCGTGCCTTTTGCATTATGATCCGGCGAGTTGCTCT 36
Query 113 TCACCAGCGAGGTTAAGGGCTTCAGGCCCG 142
|||| || ||||||||| ||||||| |||
Sbjct 35 TCACGTGCAAGGTTAAGGCCTTCAGGGCCG 6
>seq163170
Length=29127
Score = 82.4 bits (90), Expect = 1e-13
Identities = 206/308 (67%), Gaps = 5/308 (2%)
Strand=Plus/Minus
Query 12 GGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71
|||| |||||||||| | |||| ||| || ||||| || |||| | | |
Sbjct 23752 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCGGGGCTC 23693
Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131
|||| |||||||| ||| | |||||||| ||| | | | | || || |||||||||
Sbjct 23692 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 23634
Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCT 191
| ||| ||||| || ||||||||| ||| | ||||| | || || |
Sbjct 23633 AACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTTAT 23578
Query 192 AGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGA 251
||| |||| | |||||||| ||| || |||| ||||| ||| | | ||||
Sbjct 23577 GGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGA 23518
Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311
|| |||||||| | |||||| | | ||||||| | | || ||||||||||| |||
Sbjct 23517 GGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCC 23458
Query 312 AATCAAAC 319
| || |||
Sbjct 23457 ACTCGAAC 23450
>seq212791
Length=233936
Score = 78.8 bits (86), Expect = 2e-12
Identities = 104/143 (73%), Gaps = 1/143 (1%)
Strand=Plus/Plus
Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251
||| ||||||| |||||| ||| ||||||||||||| || |||| | ||||
Sbjct 195468 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 195527
Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311
|||||||||| | || | ||| | |||||||| | || |||||||||||||||
Sbjct 195528 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 195587
Query 312 AATCAAACTGGGAAATAGCTCGT 334
|| ||| | ||| |||||| ||
Sbjct 195588 AACCAAGATCGGATATAGCTGGT 195610
>seq233390
Length=250
Score = 75.2 bits (82), Expect = 2e-11
Identities = 68/86 (79%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308
||||| |||||||||| |||||||||| |||||||| | | || ||||||||||||
Sbjct 250 GGAGGGCCGAACCGGTGTCCGTTGAAAAGGCCTCGGATGAGTTGTGGCTAGGGGTGAAAG 191
Query 309 GCCAATCAAACTGGGAAATAGCTCGT 334
|| |||||| ||| |||||| ||
Sbjct 190 GCTAATCAAGGCTGGAGATAGCTGGT 165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 970479988736
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |