Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq182902 491 8e-137
seq130997 239 8e-61
seq118330 239 8e-61
seq946 105 1e-20
seq945 105 1e-20
>seq182902
Length=1436
Score = 491 bits (544), Expect = 8e-137
Identities = 295/309 (95%), Gaps = 1/309 (0%)
Strand=Plus/Plus
Query 10 CGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAG 69
||| |||| ||||||||||||||| || |||||||||||||||||| ||||| ||||
Sbjct 110 CGGTCGGGTCTTTCCTTCTGGGGAGCCCTATGCCCTTCACTGGGTGTAGTGGGGAACCAG 169
Query 70 GACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCA 129
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 GACTTTTACCTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCA 229
Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 230 TGGAATAATAGAATAGGACGT-CGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 288
Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 289 TTAATAGGGATAGTCGGGGGCGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 348
Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 349 TTGAAGACTAACTACTGCGAAAGCATTCGCCAAGGATGTTTTCATTAATCAGTGAACGAA 408
Query 310 AGTTAGGGG 318
|||||||||
Sbjct 409 AGTTAGGGG 417
>seq130997
Length=1587
Score = 239 bits (264), Expect = 8e-61
Identities = 204/248 (82%), Gaps = 3/248 (1%)
Strand=Plus/Plus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130
|| |||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||||
Sbjct 23 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 82
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| |||| | |||||| | |||| ||||| |||||| | ||| || ||||||||
Sbjct 83 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGAGTAATGAT 141
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||| ||||| ||||||||| | ||||| || ||||||||||||||||||||||||||
Sbjct 142 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 201
Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310
||||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||
Sbjct 202 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 260
Query 311 GTTAGGGG 318
||| ||||
Sbjct 261 GTTGGGGG 268
>seq118330
Length=3206
Score = 239 bits (264), Expect = 8e-61
Identities = 246/316 (78%), Gaps = 8/316 (3%)
Strand=Plus/Plus
Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63
||||||| | | ||||||| | ||| ||| || |||| ||||| | | || |
Sbjct 2035 CCGGCCGTCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCGGGTCGTGC 2094
Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122
|| | || |||||||||| ||||||||||| |||||||| |||| |||| | ||||
Sbjct 2095 CACCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 2154
Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182
|||||||||| |||| | |||||| | |||| ||||| |||||| | ||| ||
Sbjct 2155 ATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA 2213
Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242
||||||||||| ||||| ||||||||| | ||||| || ||||||||||||||||||
Sbjct 2214 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 2273
Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302
|||||||| ||||| ||| ||||||||||| || ||||||||||||||||||||||
Sbjct 2274 GGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-A 2332
Query 303 GAACGAAAGTTAGGGG 318
||||||||||| ||||
Sbjct 2333 GAACGAAAGTTGGGGG 2348
>seq946
Length=2298
Score = 105 bits (116), Expect = 1e-20
Identities = 178/246 (72%), Gaps = 10/246 (4%)
Strand=Plus/Plus
Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAG-GCCTTTGCTCGA-ATACATTAGCATGG 132
||||||| || ||| ||||||| ||||| | |||| ||||| | ||| ||||||| ||
Sbjct 178 TTACTTTAAAGAAACTAGAGTGCGCAAAGTAATGCCTATGCTCTATATATATTAGCAGGG 237
Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATT 191
|||||| ||||| | |||| |||| |||||| || ||| | | |||||||||
Sbjct 238 GATAATATTGTAGGATTT-CGGTCATATTATGTTGGCTT-TAGAAATCTGAGTAATGATT 295
Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251
|||| | | | | || | |||||| || || | |||||||||| | ||||||
Sbjct 296 AATATGAACAATTAGGCCATT-AGTATTTCATAGTAAATGGTGAAATTCGTATATTTAT- 353
Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAA-GGATGTTTTCATTAATCAGTGAACGAAA 310
||| | ||| ||| | |||| ||| || |||||||||||||||||| ||||||||
Sbjct 354 -AAGGCAAACAACTACAAAAGTGTTTGTTAAAGGATGTTTTCATTAATCA-AGAACGAAA 411
Query 311 GTTAGG 316
|| ||
Sbjct 412 ATTGGG 417
>seq945
Length=732
Score = 105 bits (116), Expect = 1e-20
Identities = 178/246 (72%), Gaps = 10/246 (4%)
Strand=Plus/Plus
Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAG-GCCTTTGCTCGA-ATACATTAGCATGG 132
||||||| || ||| ||||||| ||||||| |||| ||||| | ||| ||||||| |
Sbjct 439 TTACTTTAAAGAAACTAGAGTGCGCAAAGCAATGCCTATGCTCTATATATATTAGCAGAG 498
Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATT 191
|||| | ||||| | |||| |||| |||||| || ||||| | |||||||||
Sbjct 499 GATAACATTGTAGGATTT-CGGTCATATTCTGTTGGCTT-TAGGAATCTGAGTAATGATT 556
Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251
|||| ||| | | || | |||||| || || | |||||||||| | ||||||
Sbjct 557 AATATGGACAATTAGGCCATT-AGTATTTCATAGTAAATGGTGAAATTCGTATATTTAT- 614
Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAG-GATGTTTTCATTAATCAGTGAACGAAA 310
||| | ||| ||| | |||| ||| || ||||||||||||||||| ||||||||
Sbjct 615 -AAGGCAAACAACTACAAAAGTGTTTGTTAAATGATGTTTTCATTAATCA-AGAACGAAA 672
Query 311 GTTAGG 316
|| ||
Sbjct 673 ATTGGG 678
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 913017357824
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |