Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq182902 491 8e-137 seq130997 239 8e-61 seq118330 239 8e-61 seq946 105 1e-20 seq945 105 1e-20 >seq182902 Length=1436 Score = 491 bits (544), Expect = 8e-137 Identities = 295/309 (95%), Gaps = 1/309 (0%) Strand=Plus/Plus Query 10 CGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAG 69 ||| |||| ||||||||||||||| || |||||||||||||||||| ||||| |||| Sbjct 110 CGGTCGGGTCTTTCCTTCTGGGGAGCCCTATGCCCTTCACTGGGTGTAGTGGGGAACCAG 169 Query 70 GACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCA 129 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 170 GACTTTTACCTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCA 229 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 230 TGGAATAATAGAATAGGACGT-CGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 288 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 289 TTAATAGGGATAGTCGGGGGCGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 348 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 349 TTGAAGACTAACTACTGCGAAAGCATTCGCCAAGGATGTTTTCATTAATCAGTGAACGAA 408 Query 310 AGTTAGGGG 318 ||||||||| Sbjct 409 AGTTAGGGG 417 >seq130997 Length=1587 Score = 239 bits (264), Expect = 8e-61 Identities = 204/248 (82%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 23 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 82 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | |||| ||||| |||||| | ||| || |||||||| Sbjct 83 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGAGTAATGAT 141 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 142 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 201 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 202 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 260 Query 311 GTTAGGGG 318 ||| |||| Sbjct 261 GTTGGGGG 268 >seq118330 Length=3206 Score = 239 bits (264), Expect = 8e-61 Identities = 246/316 (78%), Gaps = 8/316 (3%) Strand=Plus/Plus Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63 ||||||| | | ||||||| | ||| ||| || |||| ||||| | | || | Sbjct 2035 CCGGCCGTCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCGGGTCGTGC 2094 Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122 || | || |||||||||| ||||||||||| |||||||| |||| |||| | |||| Sbjct 2095 CACCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 2154 Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182 |||||||||| |||| | |||||| | |||| ||||| |||||| | ||| || Sbjct 2155 ATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA 2213 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||||||| Sbjct 2214 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 2273 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||||| ||||| ||| ||||||||||| || |||||||||||||||||||||| Sbjct 2274 GGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-A 2332 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||| |||| Sbjct 2333 GAACGAAAGTTGGGGG 2348 >seq946 Length=2298 Score = 105 bits (116), Expect = 1e-20 Identities = 178/246 (72%), Gaps = 10/246 (4%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAG-GCCTTTGCTCGA-ATACATTAGCATGG 132 ||||||| || ||| ||||||| ||||| | |||| ||||| | ||| ||||||| || Sbjct 178 TTACTTTAAAGAAACTAGAGTGCGCAAAGTAATGCCTATGCTCTATATATATTAGCAGGG 237 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATT 191 |||||| ||||| | |||| |||| |||||| || ||| | | ||||||||| Sbjct 238 GATAATATTGTAGGATTT-CGGTCATATTATGTTGGCTT-TAGAAATCTGAGTAATGATT 295 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 |||| | | | | || | |||||| || || | |||||||||| | |||||| Sbjct 296 AATATGAACAATTAGGCCATT-AGTATTTCATAGTAAATGGTGAAATTCGTATATTTAT- 353 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAA-GGATGTTTTCATTAATCAGTGAACGAAA 310 ||| | ||| ||| | |||| ||| || |||||||||||||||||| |||||||| Sbjct 354 -AAGGCAAACAACTACAAAAGTGTTTGTTAAAGGATGTTTTCATTAATCA-AGAACGAAA 411 Query 311 GTTAGG 316 || || Sbjct 412 ATTGGG 417 >seq945 Length=732 Score = 105 bits (116), Expect = 1e-20 Identities = 178/246 (72%), Gaps = 10/246 (4%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAG-GCCTTTGCTCGA-ATACATTAGCATGG 132 ||||||| || ||| ||||||| ||||||| |||| ||||| | ||| ||||||| | Sbjct 439 TTACTTTAAAGAAACTAGAGTGCGCAAAGCAATGCCTATGCTCTATATATATTAGCAGAG 498 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATT 191 |||| | ||||| | |||| |||| |||||| || ||||| | ||||||||| Sbjct 499 GATAACATTGTAGGATTT-CGGTCATATTCTGTTGGCTT-TAGGAATCTGAGTAATGATT 556 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 |||| ||| | | || | |||||| || || | |||||||||| | |||||| Sbjct 557 AATATGGACAATTAGGCCATT-AGTATTTCATAGTAAATGGTGAAATTCGTATATTTAT- 614 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAG-GATGTTTTCATTAATCAGTGAACGAAA 310 ||| | ||| ||| | |||| ||| || ||||||||||||||||| |||||||| Sbjct 615 -AAGGCAAACAACTACAAAAGTGTTTGTTAAATGATGTTTTCATTAATCA-AGAACGAAA 672 Query 311 GTTAGG 316 || || Sbjct 673 ATTGGG 678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 913017357824