Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq208546 848 0.0 seq238481 320 7e-85 seq209264 320 7e-85 seq118331 235 2e-59 seq151131 114 5e-23 seq235201 111 7e-22 seq153897 91.5 6e-16 seq84743 78.8 4e-12 >seq208546 Length=2120 Score = 848 bits (940), Expect = 0.0 Identities = 591/668 (88%), Gaps = 4/668 (1%) Strand=Plus/Minus Query 20 CCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTA 79 || |||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 1618 CCATGTGAAACTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTA 1559 Query 80 AATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAA 139 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1558 AATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAA 1499 Query 140 AGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||||||||| ||||||||||||| || | ||||||||||||||||||||||| Sbjct 1498 AGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGTATGTGAAATTGTTGAAAGGGAAGCG 1439 Query 200 CTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGC 259 ||| ||||||||||||| ||| | | || || || | || || |||| | Sbjct 1438 CTTACAACCAGACTTGCGCGCGGCGGTTCCCCCTTCCTTTTGGTTGGGCTACTCCGTCGT 1379 Query 260 GGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCC-CCCTTC 318 | ||||||| |||| | || || |||||| ||||| ||| |||||||| | |||||| Sbjct 1378 GTCCAGGCCAACATCGGTTCTGGGGGTCGGTTAAAGACCCTGGGAATGTATCTACCCTTC 1319 Query 319 GGGGGGTG--TTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCG 376 ||| | | ||||||||| ||||| |||||||| || |||| |||| |||||| || Sbjct 1318 GGGCGTAGACTTATAGCCCAGGGTGTCATGCGGCCTCCCGGGACCGAGGAACGCGCTTCG 1259 Query 377 GCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCT 436 ||| ||||| ||||||||||||||| |||| ||||||||| ||||||||||||||||||| Sbjct 1258 GCTCGGATGTTGGCGTAATGGTTGTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCT 1199 Query 437 AACATCTATGCGAGTGTTTGGGTGTCAAACCCGTG-CGCGTAATGAAAGTGAACGGAGGT 495 ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 1198 AACATCTATGCGAGTGTTTGGGTGTCAAACCCGGAACGCGAAATGAAAGTGAACGGAGGT 1139 Query 496 GGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAG 555 |||| || ||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1138 AGGAAGCCTTGAGGCTGCACTATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAG 1079 Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1078 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 1019 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 1018 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGCAT 959 Query 676 AGGGGCGA 683 |||||||| Sbjct 958 AGGGGCGA 951 >seq238481 Length=278 Score = 320 bits (354), Expect = 7e-85 Identities = 242/282 (86%), Gaps = 6/282 (2%) Strand=Plus/Plus Query 269 AGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTGTT 328 |||||||| |||||||| ||||||||||| || || | | || |||| || || Sbjct 1 AGCATCAGTCCGGGCGGTTGGATAAAGGCCTATTAAACGTACCTCTCT-CGGGAGGACTT 59 Query 329 ATAGCCCGG--GGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAGGATGC 386 |||| || |||| |||| || ||||||| |||||||||||| | |||||||||| Sbjct 60 ATAG---GGTAGGTGACATGCAACCAGCCTGGATTGAGGTCCGCGCATCTGCTAGGATGC 116 Query 387 TGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATG 446 ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 117 TGGCGTAATGGCTGTAAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATG 176 Query 447 CGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTG 506 |||||||||||||||||| |||| ||||||||||||||||||||||||||||||| | Sbjct 177 CGAGTGTTTGGGTGTCAAGCCCGAACGCGTAATGAAAGTGAACGGAGGTGGGAACCTTTC 236 Query 507 AGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTT 548 ||||||||||||||||||||||||||||||||||||||||| Sbjct 237 GGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTT 278 >seq209264 Length=535 Score = 320 bits (354), Expect = 7e-85 Identities = 252/298 (85%), Gaps = 3/298 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||||||||||||||||||| ||||||||||||||||||| |||| ||||||| Sbjct 232 GAGTCAAGTTGTTTGGGAATGCAGCTTAAAATGGGAGGTAAATTTCTCCTAAGGCTAAAT 291 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 292 AACGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 351 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCCG 219 |||||||||||||| ||||||||||||||||||||||||||||| |||||||||| | Sbjct 352 AGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTTGGGCT 411 Query 220 CAGTTGCTCAACC-GGCCCCTCGGCCGGTGCACTCTTCTGCGGTCAGGCCAGCATCAGCT 278 |||| ||| || || ||| |||||||||||||| | | ||||||||||||||| | Sbjct 412 TGGTTGATCATCCGGGGTTCTC-CCCGGTGCACTCTTCCG-GCTCAGGCCAGCATCAGTT 469 Query 279 CGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTGTTATAGCCCG 336 || | | |||||||||| |||||||||||| | || ||||| ||||||||||||| Sbjct 470 CGCCCTGGGGGATAAAGGCTTCGGGAATGTGGCTCTCTCCGGGGAGTGTTATAGCCCG 527 >seq118331 Length=3954 Score = 235 bits (260), Expect = 2e-59 Identities = 224/282 (79%), Gaps = 7/282 (2%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGT--GTC 462 |||||||||||| ||||||||||||||||||| |||| | ||||||| ||| || Sbjct 1125 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCCAGT- 1183 Query 463 AAACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGA 521 |||||||| | || || ||| ||| || || || ||| | ||||||||| ||| Sbjct 1184 AAACCCGTAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCTCGCGGGTGCACCGCCGA 1240 Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581 |||| | |||| | | || || || |||| |||||| |||| |||||||||||||| Sbjct 1241 CCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGAT 1300 Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641 |||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| | Sbjct 1301 GGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGAT 1360 Query 642 TCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 1361 ACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 1402 Score = 156 bits (172), Expect = 2e-35 Identities = 131/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||||||||||||||||| | || ||| |||||||| | || || |||||| Sbjct 742 CGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAATTCCGTCCAAGGCTAAA 801 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || ||| ||||||||||||| ||||||| | || ||||||||||||| |||||| | Sbjct 802 TACGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAA 861 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| ||| || | ||||||||| | ||||||||| Sbjct 862 AAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 902 >seq151131 Length=303 Score = 114 bits (126), Expect = 5e-23 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 303 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAAC 244 Query 668 TTGGGTATAGGGGCGA 683 |||| || ||||||| Sbjct 243 ATGGGCATGGGGGCGA 228 >seq235201 Length=320 Score = 111 bits (122), Expect = 7e-22 Identities = 116/151 (77%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 50 GTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT-TCTAAAGCTAAATATTGGCCAG 108 ||||||||||| ||| | || ||| |||||| ||| || || |||||||| || || Sbjct 1 GTTTGGGAATGTAGCCCAAATCGGGCGGTAAAATTCCGTCCAAGGCTAAATACAGGTGAG 60 Query 109 AGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTA 168 ||||| ||||| ||||||| |||| ||||||||||||| |||||| ||| |||| | Sbjct 61 AGACCAATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGGACTTTGAAAATTGAGTCA 120 Query 169 AAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || || | || |||||| | ||||||||| Sbjct 121 AAGAGTGCTTGGAATTGTCGGGAGGGAAGCG 151 >seq153897 Length=360 Score = 91.5 bits (100), Expect = 6e-16 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 591 TGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTG 650 ||||||| ||| ||||||||||||||||| |||||||| ||||||| | ||| ||| Sbjct 360 TGCCTGAGCGGGGCGAAGCCAGAGGAAACTCCAGTGGAGGCCCGCAGCGATACTGATGTG 301 Query 651 CAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| | ||||| | |||||||||||||||| Sbjct 300 AAAATTGTTCGTCTGACTTGGGTATAGGGGCGA 268 >seq84743 Length=1678 Score = 78.8 bits (86), Expect = 4e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100 |||| |||||||||||||||||| | || | |||||||| | || || | |||||| Sbjct 1573 AGTCATGTTGTTTGGGAATGCAGCCCAAATCAGCTGGTAAATTCCATCCAAGGGTAAATA 1632 Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 ||| ||||||| ||||| ||||||| | || |||||||||| Sbjct 1633 CGGGCAAGAGACCAATAGCAAACAAGTACTGCGAGGGAAAGATGAA 1678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2074884432400