Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq208546 848 0.0
seq238481 320 7e-85
seq209264 320 7e-85
seq118331 235 2e-59
seq151131 114 5e-23
seq235201 111 7e-22
seq153897 91.5 6e-16
seq84743 78.8 4e-12
>seq208546
Length=2120
Score = 848 bits (940), Expect = 0.0
Identities = 591/668 (88%), Gaps = 4/668 (1%)
Strand=Plus/Minus
Query 20 CCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTA 79
|| |||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1618 CCATGTGAAACTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTA 1559
Query 80 AATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAA 139
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 AATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAA 1499
Query 140 AGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
||||||||||||||||| ||||||||||||| || | |||||||||||||||||||||||
Sbjct 1498 AGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGTATGTGAAATTGTTGAAAGGGAAGCG 1439
Query 200 CTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGC 259
||| ||||||||||||| ||| | | || || || | || || |||| |
Sbjct 1438 CTTACAACCAGACTTGCGCGCGGCGGTTCCCCCTTCCTTTTGGTTGGGCTACTCCGTCGT 1379
Query 260 GGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCC-CCCTTC 318
| ||||||| |||| | || || |||||| ||||| ||| |||||||| | ||||||
Sbjct 1378 GTCCAGGCCAACATCGGTTCTGGGGGTCGGTTAAAGACCCTGGGAATGTATCTACCCTTC 1319
Query 319 GGGGGGTG--TTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCG 376
||| | | ||||||||| ||||| |||||||| || |||| |||| |||||| ||
Sbjct 1318 GGGCGTAGACTTATAGCCCAGGGTGTCATGCGGCCTCCCGGGACCGAGGAACGCGCTTCG 1259
Query 377 GCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCT 436
||| ||||| ||||||||||||||| |||| ||||||||| |||||||||||||||||||
Sbjct 1258 GCTCGGATGTTGGCGTAATGGTTGTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCT 1199
Query 437 AACATCTATGCGAGTGTTTGGGTGTCAAACCCGTG-CGCGTAATGAAAGTGAACGGAGGT 495
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1198 AACATCTATGCGAGTGTTTGGGTGTCAAACCCGGAACGCGAAATGAAAGTGAACGGAGGT 1139
Query 496 GGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAG 555
|||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1138 AGGAAGCCTTGAGGCTGCACTATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAG 1079
Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 1019
Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1018 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGCAT 959
Query 676 AGGGGCGA 683
||||||||
Sbjct 958 AGGGGCGA 951
>seq238481
Length=278
Score = 320 bits (354), Expect = 7e-85
Identities = 242/282 (86%), Gaps = 6/282 (2%)
Strand=Plus/Plus
Query 269 AGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTGTT 328
|||||||| |||||||| ||||||||||| || || | | || |||| || ||
Sbjct 1 AGCATCAGTCCGGGCGGTTGGATAAAGGCCTATTAAACGTACCTCTCT-CGGGAGGACTT 59
Query 329 ATAGCCCGG--GGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAGGATGC 386
|||| || |||| |||| || ||||||| |||||||||||| | ||||||||||
Sbjct 60 ATAG---GGTAGGTGACATGCAACCAGCCTGGATTGAGGTCCGCGCATCTGCTAGGATGC 116
Query 387 TGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATG 446
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 117 TGGCGTAATGGCTGTAAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATG 176
Query 447 CGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTG 506
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
Sbjct 177 CGAGTGTTTGGGTGTCAAGCCCGAACGCGTAATGAAAGTGAACGGAGGTGGGAACCTTTC 236
Query 507 AGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTT 548
|||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTT 278
>seq209264
Length=535
Score = 320 bits (354), Expect = 7e-85
Identities = 252/298 (85%), Gaps = 3/298 (1%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
||||| |||||||||||||||||||| ||||||||||||||||||| |||| |||||||
Sbjct 232 GAGTCAAGTTGTTTGGGAATGCAGCTTAAAATGGGAGGTAAATTTCTCCTAAGGCTAAAT 291
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| ||| |||||||||||||| ||||||| |||| ||||||||||||| |||||| ||
Sbjct 292 AACGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 351
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCCG 219
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
Sbjct 352 AGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTTGGGCT 411
Query 220 CAGTTGCTCAACC-GGCCCCTCGGCCGGTGCACTCTTCTGCGGTCAGGCCAGCATCAGCT 278
|||| ||| || || ||| |||||||||||||| | | ||||||||||||||| |
Sbjct 412 TGGTTGATCATCCGGGGTTCTC-CCCGGTGCACTCTTCCG-GCTCAGGCCAGCATCAGTT 469
Query 279 CGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTGTTATAGCCCG 336
|| | | |||||||||| |||||||||||| | || ||||| |||||||||||||
Sbjct 470 CGCCCTGGGGGATAAAGGCTTCGGGAATGTGGCTCTCTCCGGGGAGTGTTATAGCCCG 527
>seq118331
Length=3954
Score = 235 bits (260), Expect = 2e-59
Identities = 224/282 (79%), Gaps = 7/282 (2%)
Strand=Plus/Plus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGT--GTC 462
|||||||||||| ||||||||||||||||||| |||| | ||||||| ||| ||
Sbjct 1125 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCCAGT- 1183
Query 463 AAACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGA 521
|||||||| | || || ||| ||| || || || ||| | ||||||||| |||
Sbjct 1184 AAACCCGTAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCTCGCGGGTGCACCGCCGA 1240
Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581
|||| | |||| | | || || || |||| |||||| |||| ||||||||||||||
Sbjct 1241 CCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGAT 1300
Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641
|||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| |
Sbjct 1301 GGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGAT 1360
Query 642 TCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||| ||||||||||| ||||| | ||||||||||||||||
Sbjct 1361 ACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 1402
Score = 156 bits (172), Expect = 2e-35
Identities = 131/161 (81%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98
||||||| |||||||||||||||||| | || ||| |||||||| | || || ||||||
Sbjct 742 CGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAATTCCGTCCAAGGCTAAA 801
Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158
|| ||| ||||||||||||| ||||||| | || ||||||||||||| |||||| |
Sbjct 802 TACGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAA 861
Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|||||||| ||| || | ||||||||| | |||||||||
Sbjct 862 AAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 902
>seq151131
Length=303
Score = 114 bits (126), Expect = 5e-23
Identities = 71/76 (93%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 303 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAAC 244
Query 668 TTGGGTATAGGGGCGA 683
|||| || |||||||
Sbjct 243 ATGGGCATGGGGGCGA 228
>seq235201
Length=320
Score = 111 bits (122), Expect = 7e-22
Identities = 116/151 (77%), Gaps = 1/151 (1%)
Strand=Plus/Plus
Query 50 GTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT-TCTAAAGCTAAATATTGGCCAG 108
||||||||||| ||| | || ||| |||||| ||| || || |||||||| || ||
Sbjct 1 GTTTGGGAATGTAGCCCAAATCGGGCGGTAAAATTCCGTCCAAGGCTAAATACAGGTGAG 60
Query 109 AGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTA 168
||||| ||||| ||||||| |||| ||||||||||||| |||||| ||| |||| |
Sbjct 61 AGACCAATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGGACTTTGAAAATTGAGTCA 120
Query 169 AAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|| || | || |||||| | |||||||||
Sbjct 121 AAGAGTGCTTGGAATTGTCGGGAGGGAAGCG 151
>seq153897
Length=360
Score = 91.5 bits (100), Expect = 6e-16
Identities = 76/93 (82%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 591 TGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTG 650
||||||| ||| ||||||||||||||||| |||||||| ||||||| | ||| |||
Sbjct 360 TGCCTGAGCGGGGCGAAGCCAGAGGAAACTCCAGTGGAGGCCCGCAGCGATACTGATGTG 301
Query 651 CAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|||| | ||||| | ||||||||||||||||
Sbjct 300 AAAATTGTTCGTCTGACTTGGGTATAGGGGCGA 268
>seq84743
Length=1678
Score = 78.8 bits (86), Expect = 4e-12
Identities = 81/106 (76%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100
|||| |||||||||||||||||| | || | |||||||| | || || | ||||||
Sbjct 1573 AGTCATGTTGTTTGGGAATGCAGCCCAAATCAGCTGGTAAATTCCATCCAAGGGTAAATA 1632
Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146
||| ||||||| ||||| ||||||| | || ||||||||||
Sbjct 1633 CGGGCAAGAGACCAATAGCAAACAAGTACTGCGAGGGAAAGATGAA 1678
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2074884432400
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