Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= AAMG01000370.1
Length=180
Score E
Sequences producing significant alignments: (Bits) Value
seq155431 89.7 5e-16
seq206697 87.8 2e-15
seq159612 77.0 3e-12
>seq155431
Length=1149
Score = 89.7 bits (98), Expect = 5e-16
Identities = 88/114 (77%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60
|||| |||||||||||| ||| ||||||| |||||||||| || ||||||| |||
Sbjct 835 GGCATTCGGTGGATGCCTTGGCGGCAAGAGGCGATGAAGGACGTGGTACGCTGCGATAAG 894
Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114
|||||| || || | | |||| |||||||| ||||||||||| |||||
Sbjct 895 CTACGGTGAGGTGCGAACAGCCTTTGACCCGTAGATTTCCGAATGGGGAAACCC 948
>seq206697
Length=2363
Score = 87.8 bits (96), Expect = 2e-15
Identities = 131/180 (73%), Gaps = 7/180 (4%)
Strand=Plus/Minus
Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67
|||| |||||| ||| || ||||||| ||||||||| | ||||||| |||| |||||
Sbjct 1682 GGTGAATGCCTTGGCACTGAGAGGCGATGAAGGACGTAGCACGCTGCGATAAGCCACGGG 1623
Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGA-TATATTG-GA 125
|| ||| | ||||||||| ||| ||||||||||| ||||||| | ||||| |
Sbjct 1622 GAGGGGCGAGCGCCCGTTGATCCGTGGATCTCCGAATGGGGAAACCCGACTCTATTGAGT 1563
Query 126 GATATATC-AT--AACGCTAGGCG--TTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180
|| || || | | ||| || | || ||| ||||||||||||||||| ||||
Sbjct 1562 CATCCTTCGATGAATCCATAGTCGAAGGACGCTAACCCGGGGAACTGAAACATCTCAGTA 1503
>seq159612
Length=999
Score = 77.0 bits (84), Expect = 3e-12
Identities = 88/117 (75%), Gaps = 5/117 (4%)
Strand=Plus/Plus
Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60
|||| ||||||||||||| ||| | |||||||||||||||||| |||||| |||
Sbjct 587 GGCACACGGTGGATGCCTTGGCACCAAGAGGCGAAGAAGGACGTGGACGACTGCGATAAG 646
Query 61 CTACGG---GGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114
| |||| || | | ||| | |||| |||| ||| ||||||||||| |||||
Sbjct 647 CCACGGTGAGGCGTTGAACAGCC--CTTGACCCGTGGATTTCCGAATGGGGAAACCC 701
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475698423928
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |