Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq155431 89.7 5e-16 seq206697 87.8 2e-15 seq159612 77.0 3e-12 >seq155431 Length=1149 Score = 89.7 bits (98), Expect = 5e-16 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| |||||||||||| ||| ||||||| |||||||||| || ||||||| ||| Sbjct 835 GGCATTCGGTGGATGCCTTGGCGGCAAGAGGCGATGAAGGACGTGGTACGCTGCGATAAG 894 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 |||||| || || | | |||| |||||||| ||||||||||| ||||| Sbjct 895 CTACGGTGAGGTGCGAACAGCCTTTGACCCGTAGATTTCCGAATGGGGAAACCC 948 >seq206697 Length=2363 Score = 87.8 bits (96), Expect = 2e-15 Identities = 131/180 (73%), Gaps = 7/180 (4%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 |||| |||||| ||| || ||||||| ||||||||| | ||||||| |||| ||||| Sbjct 1682 GGTGAATGCCTTGGCACTGAGAGGCGATGAAGGACGTAGCACGCTGCGATAAGCCACGGG 1623 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGA-TATATTG-GA 125 || ||| | ||||||||| ||| ||||||||||| ||||||| | ||||| | Sbjct 1622 GAGGGGCGAGCGCCCGTTGATCCGTGGATCTCCGAATGGGGAAACCCGACTCTATTGAGT 1563 Query 126 GATATATC-AT--AACGCTAGGCG--TTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 || || || | | ||| || | || ||| ||||||||||||||||| |||| Sbjct 1562 CATCCTTCGATGAATCCATAGTCGAAGGACGCTAACCCGGGGAACTGAAACATCTCAGTA 1503 >seq159612 Length=999 Score = 77.0 bits (84), Expect = 3e-12 Identities = 88/117 (75%), Gaps = 5/117 (4%) Strand=Plus/Plus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| ||||||||||||| ||| | |||||||||||||||||| |||||| ||| Sbjct 587 GGCACACGGTGGATGCCTTGGCACCAAGAGGCGAAGAAGGACGTGGACGACTGCGATAAG 646 Query 61 CTACGG---GGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 | |||| || | | ||| | |||| |||| ||| ||||||||||| ||||| Sbjct 647 CCACGGTGAGGCGTTGAACAGCC--CTTGACCCGTGGATTTCCGAATGGGGAAACCC 701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475698423928