Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= AAMG01000383.1
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
seq211067 358 2e-96
seq216307 235 1e-59
seq163170 230 6e-58
seq212791 197 4e-48
>seq211067
Length=575
Score = 358 bits (396), Expect = 2e-96
Identities = 318/397 (80%), Gaps = 2/397 (1%)
Strand=Plus/Plus
Query 15 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCG 74
||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||
Sbjct 162 AAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTGTTCG 221
Query 75 GAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGG 134
|||||||||||||||||||| | | |||||| | | ||| | | |||||||||||||||
Sbjct 222 GAATTACTGGGCGTAAAGCGCGTGTAGGCGGCTTGGCAAGTCGGTTGTGAAATCCCCGGG 281
Query 135 CTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAAT 194
||||||| ||||| ||| | ||| | ||||||| | ||||| || ||||
Sbjct 282 CTTAACCCGGGAAATGCGACCGAAACTACCTCGCTAGAGTCTCGGAGAGGAAGGCAGAAT 341
Query 195 TCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCC 254
||| |||||| ||||||| |||||||| ||||||| ||| | |||||||| |||
Sbjct 342 TCCCAGTGTAGGGGTGAAATCCGTAGATACTGGGAGGAATACCGGTAGCGAAGGCGGCCT 401
Query 255 CCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 314
|||| | ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 402 TCTGGACGATGACTGACGCTCAGGCGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 461
Query 315 TGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGG--ATTTACTTCCTTGGTAA 372
|||||||||||||| |||||||| ||||| ||| |||| ||| || | |||
Sbjct 462 TGGTAGTCCACGCCGTAAACGATGAGCACTAGGTGTCGGGGGTATTGACCCCTCCGGTGC 521
Query 373 CGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
|||||||||||| | |||| |||||||||||| |||
Sbjct 522 CGTAGCTAACGCATTAAGTGCACCGCCTGGGGAGTAC 558
>seq216307
Length=286
Score = 235 bits (260), Expect = 1e-59
Identities = 144/153 (94%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 110 GAATAAGCACCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGTGCAAGCGTTA 169
Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130
|||||||||||||||||||||||||||| |||||||| |||||| ||| ||||||| |||
Sbjct 170 ATCGGAATTACTGGGCGTAAAGCGTGCGTAGGCGGTTTTGTAAGTCAGATGTGAAAGCCC 229
Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGC 163
|||||| ||||||||||||||||||| ||||||
Sbjct 230 CGGGCTCAACCTGGGAATTGCATTTGAGACTGC 262
>seq163170
Length=29127
Score = 230 bits (254), Expect = 6e-58
Identities = 297/409 (73%), Gaps = 2/409 (0%)
Strand=Plus/Minus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| |||
Sbjct 27740 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 27681
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||||| |||||| | |||||||||||||| | ||| || | | |||| | | ||
Sbjct 27680 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 27621
Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182
||||||| ||||| |||| ||| || | | ||| | || |||| | ||
Sbjct 27620 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 27561
Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242
|| | |||||| | ||| ||| |||||||||||||| || | | ||||||||| ||
Sbjct 27560 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 27501
Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302
|||| ||| | ||||| |||||||| || | |||||||| ||||||| || |
Sbjct 27500 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGG 27441
Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362
|||||||||||| ||||||| ||| |||||||| ||||| | || | | |
Sbjct 27440 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 27381
Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
|| || || ||||||||||||| |||| ||||||||||| |||
Sbjct 27380 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 27332
>seq212791
Length=233936
Score = 197 bits (218), Expect = 4e-48
Identities = 246/334 (74%), Gaps = 10/334 (3%)
Strand=Plus/Plus
Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67
|| ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| |
Sbjct 165236 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 165295
Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT---TGTGTAAGACAGGTGTGA 124
|| ||||||| ||||||||||||| | || ||||||| | | || || |||
Sbjct 165296 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAG---TGA 165352
Query 125 AATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183
|| | | | || |||| | | ||| | | || ||| ||||| | |||||
Sbjct 165353 AAGTCGC---CAAAAACTGGCGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAG 165409
Query 184 GGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGC 243
| | |||||||| | |||||| ||||||| || |||| | | |||||| |||| ||
Sbjct 165410 GAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCTACGAAGGAACGCCAAAAGC 165469
Query 244 GAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGG 303
||||||||| | ||||| || |||||| | ||||||| |||||||| ||| ||
Sbjct 165470 GAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGAGTGCGAAAGCATGGGGAGCGAACGGG 165529
Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337
||||||||||||||||||||| ||| ||||||||
Sbjct 165530 ATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 165563
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1286524458752
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |