Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq198914 178 2e-42
seq218687 163 4e-38
seq212791 149 9e-34
seq163170 141 1e-31
seq206697 140 4e-31
seq193326 98.7 1e-18
seq226853 86.0 9e-15
seq224050 86.0 9e-15
>seq198914
Length=2821
Score = 178 bits (196), Expect = 2e-42
Identities = 193/253 (76%), Gaps = 6/253 (2%)
Strand=Plus/Plus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| |||||| ||||||||||||||||| || ||||| ||| ||| | | |||||||
Sbjct 68 CTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTGC-GACTTCGCAG 126
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120
| ||||||||||||||||||||||| || || || ||| |||| | | |||
Sbjct 127 AGCCCTGTGTTTTTAGTAAACAGTCGTCACCGCCTCTTTACTGTGACCCACTTCGGCTTC 186
Query 121 A----CACGTCGTTCACCAGCAGTGG-CACCCCTTCTCCCGAAGTTACGGGGCCATTTTG 175
| || | | | |||| | |||| |||||||| ||||||||||||||||| || |||
Sbjct 187 AGCCGCAGGGCTTACACCTGATGTGGGCACCCCTTATCCCGAAGTTACGGGGCTATGTTG 246
Query 176 CCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTG 235
|||| ||||||| ||| ||||| | | ||||||||||| ||| || | | || ||||
Sbjct 247 CCGAGTTCCTTAGCCAAAGTTCTCTCACGCGCCTTAGTATACTCAACTCGCCTACGTGTG 306
Query 236 TCGGTTTACGGTA 248
|| ||||||||||
Sbjct 307 TCCGTTTACGGTA 319
>seq218687
Length=770
Score = 163 bits (180), Expect = 4e-38
Identities = 192/253 (76%), Gaps = 9/253 (4%)
Strand=Plus/Plus
Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61
||| |||||| ||||||||||||||||| || |||||||| |||| | || ||||||
Sbjct 5 TTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACATCCACTTTC-GTGTTCGCAGA 63
Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCAC-CACCAGCTCA 120
| ||||||||||| |||||||||||| | || || |||||||| || | |||||
Sbjct 64 GTCCTGTGTTTTTGGTAAACAGTCGCAGCGGCCTGGTCACTGCGACCCGGCAAC-GCTCA 122
Query 121 AC-ACGTCGTTCACCA----GCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTG 175
| ||| | ||| || | ||| | ||||||||||||||||||| || || |||
Sbjct 123 GCCACGCACGTGGCCACGTCGCCG-GGCGCACCTTCTCCCGAAGTTACGGTGCTATGTTG 181
Query 176 CCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTG 235
|| | |||||| ||| ||||| | | | ||||| || |||||| || | | |||||||
Sbjct 182 CCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTGAGGATTCTCACCCCGCCTACCTGTG 241
Query 236 TCGGTTTACGGTA 248
|||||||||||||
Sbjct 242 TCGGTTTACGGTA 254
>seq212791
Length=233936
Score = 149 bits (164), Expect = 9e-34
Identities = 179/241 (74%), Gaps = 12/241 (5%)
Strand=Plus/Minus
Query 8 TTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTG 67
||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | ||||
Sbjct 196790 TTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCCTG 196732
Query 68 TGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTC 127
|||||||| |||||||||||| ||| || | | ||| | | | |||| | |
Sbjct 196731 TGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGAT- 196675
Query 128 GTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187
|| || | ||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 196674 -------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTC 196623
Query 188 ACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGT 247
|| |||| | | | |||| |||||| |||||| || ||||||||||||||| |||
Sbjct 196622 GACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGT 196563
Query 248 A 248
|
Sbjct 196562 A 196562
>seq163170
Length=29127
Score = 141 bits (156), Expect = 1e-31
Identities = 177/243 (73%), Gaps = 20/243 (8%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | ||||| | ||| || ||||
Sbjct 22396 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 22454
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||||| || || |||||||| ||
Sbjct 22455 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 22501
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || || ||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 22502 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 22555
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | |||| | || | ||| ||||||||||||| |||||||||||||||| |
Sbjct 22556 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 22615
Query 246 GTA 248
|||
Sbjct 22616 GTA 22618
>seq206697
Length=2363
Score = 140 bits (154), Expect = 4e-31
Identities = 174/236 (74%), Gaps = 12/236 (5%)
Strand=Plus/Plus
Query 14 CACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTT 73
||||||||||||||||| || ||||| ||| ||||||| ||||||| | ||||||||||
Sbjct 2 CACCGGGCAGGCGTCAGACCCTATACGTCGCCTTACCGGCTTCGCAGAGCCCTGTGTTTT 61
Query 74 TAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTT-CA 132
| ||||||||||| ||| || || || | || || || | | ||| |
Sbjct 62 TGTTAAACAGTCGCCACCCCCT-GGCT-TGTGCCCCCCGCC---------CCTGGTTGCC 110
Query 133 CCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCAC 192
| || | || || ||||| ||||||||||| || | |||||||| |||||| | ||
Sbjct 111 CAAGAACGGGGCCCTCTTCTTCCGAAGTTACGAGGGTAATTTGCCGAGTTCCTTCAACAT 170
Query 193 AGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
||| | | | |||||| |||| ||||||| | |||||||||||||||| ||||
Sbjct 171 CATTCTCTCAAGCGCCTTGGTATACTCTACCAGTCCACCTGTGTCGGTTTGGGGTA 226
>seq193326
Length=1315
Score = 98.7 bits (108), Expect = 1e-18
Identities = 86/107 (80%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201
|||| |||||| |||||||||||| || | |||||||| |||||| || | | |||| |
Sbjct 1271 GCACACCTTCTTCCGAAGTTACGGTGCTAATTTGCCGAGTTCCTTCACGAGGGATCACTC 1212
Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|||||| | ||||||| || | | ||||||||||||||||||||
Sbjct 1211 ACGCGCCTTGGAATTCTCTTCCCGTCTACCTGTGTCGGTTTACGGTA 1165
>seq226853
Length=20166
Score = 86.0 bits (94), Expect = 9e-15
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 154 CCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGT 213
||||||||||||||| ||||||||| ||||||| | |||| | || | ||| ||
Sbjct 20048 CCGAAGTTACGGGGCTATTTTGCCGGGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGT 20107
Query 214 ATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
||||||||||| |||||||||||||||| ||||
Sbjct 20108 ATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 20142
>seq224050
Length=624
Score = 86.0 bits (94), Expect = 9e-15
Identities = 160/234 (68%), Gaps = 27/234 (12%)
Strand=Plus/Plus
Query 18 GGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGT 77
|| || | |||| || ||||| ||| ||| || ||| ||| | |||||||||| |
Sbjct 294 GGTCACGTGTCACACCCTATACGTCGTCTTCACGACTTTGCAGAGTGCTGTGTTTTTGTT 353
Query 78 AAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCACCAGC 137
||||||||||| | | ||| ||| ||| ||||| |
Sbjct 354 AAACAGTCGCTAAACGCAATTTACTGAGAC----------------------TCACC-GA 390
Query 138 AGTG-GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTT 196
|||| ||||| ||||||||||||||||| ||| | | |||||| ||||||| | |||
Sbjct 391 AGTGAGCACCTCTTCTCCCGAAGTTACGAGGCTAATGTGCCGAGTTCCTTAGAGAGGGTT 450
Query 197 CACCCGAACGCCTTAGTATTCTCTAC-CTGA-CCACCTGTGTCGGTTTACGGTA 248
| | || ||||| ||| || ||| || | ||||||||||||||||||||||
Sbjct 451 CTCTCGCGCGCCTGAGTGCGCT-TACACTCACCCACCTGTGTCGGTTTACGGTA 503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 692795691224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |