Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq198914 178 2e-42 seq218687 163 4e-38 seq212791 149 9e-34 seq163170 141 1e-31 seq206697 140 4e-31 seq193326 98.7 1e-18 seq226853 86.0 9e-15 seq224050 86.0 9e-15 >seq198914 Length=2821 Score = 178 bits (196), Expect = 2e-42 Identities = 193/253 (76%), Gaps = 6/253 (2%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| ||| ||| | | ||||||| Sbjct 68 CTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTGC-GACTTCGCAG 126 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||||||||||||||| || || || ||| |||| | | ||| Sbjct 127 AGCCCTGTGTTTTTAGTAAACAGTCGTCACCGCCTCTTTACTGTGACCCACTTCGGCTTC 186 Query 121 A----CACGTCGTTCACCAGCAGTGG-CACCCCTTCTCCCGAAGTTACGGGGCCATTTTG 175 | || | | | |||| | |||| |||||||| ||||||||||||||||| || ||| Sbjct 187 AGCCGCAGGGCTTACACCTGATGTGGGCACCCCTTATCCCGAAGTTACGGGGCTATGTTG 246 Query 176 CCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTG 235 |||| ||||||| ||| ||||| | | ||||||||||| ||| || | | || |||| Sbjct 247 CCGAGTTCCTTAGCCAAAGTTCTCTCACGCGCCTTAGTATACTCAACTCGCCTACGTGTG 306 Query 236 TCGGTTTACGGTA 248 || |||||||||| Sbjct 307 TCCGTTTACGGTA 319 >seq218687 Length=770 Score = 163 bits (180), Expect = 4e-38 Identities = 192/253 (76%), Gaps = 9/253 (4%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||||||||||||||||| || |||||||| |||| | || |||||| Sbjct 5 TTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACATCCACTTTC-GTGTTCGCAGA 63 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCAC-CACCAGCTCA 120 | ||||||||||| |||||||||||| | || || |||||||| || | ||||| Sbjct 64 GTCCTGTGTTTTTGGTAAACAGTCGCAGCGGCCTGGTCACTGCGACCCGGCAAC-GCTCA 122 Query 121 AC-ACGTCGTTCACCA----GCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTG 175 | ||| | ||| || | ||| | ||||||||||||||||||| || || ||| Sbjct 123 GCCACGCACGTGGCCACGTCGCCG-GGCGCACCTTCTCCCGAAGTTACGGTGCTATGTTG 181 Query 176 CCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTG 235 || | |||||| ||| ||||| | | | ||||| || |||||| || | | ||||||| Sbjct 182 CCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTGAGGATTCTCACCCCGCCTACCTGTG 241 Query 236 TCGGTTTACGGTA 248 ||||||||||||| Sbjct 242 TCGGTTTACGGTA 254 >seq212791 Length=233936 Score = 149 bits (164), Expect = 9e-34 Identities = 179/241 (74%), Gaps = 12/241 (5%) Strand=Plus/Minus Query 8 TTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTG 67 ||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | |||| Sbjct 196790 TTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCCTG 196732 Query 68 TGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTC 127 |||||||| |||||||||||| ||| || | | ||| | | | |||| | | Sbjct 196731 TGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGAT- 196675 Query 128 GTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187 || || | ||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 196674 -------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTC 196623 Query 188 ACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGT 247 || |||| | | | |||| |||||| |||||| || ||||||||||||||| ||| Sbjct 196622 GACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGT 196563 Query 248 A 248 | Sbjct 196562 A 196562 >seq163170 Length=29127 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 22396 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 22454 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 22455 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 22501 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 22502 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 22555 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 22556 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 22615 Query 246 GTA 248 ||| Sbjct 22616 GTA 22618 >seq206697 Length=2363 Score = 140 bits (154), Expect = 4e-31 Identities = 174/236 (74%), Gaps = 12/236 (5%) Strand=Plus/Plus Query 14 CACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTT 73 ||||||||||||||||| || ||||| ||| ||||||| ||||||| | |||||||||| Sbjct 2 CACCGGGCAGGCGTCAGACCCTATACGTCGCCTTACCGGCTTCGCAGAGCCCTGTGTTTT 61 Query 74 TAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTT-CA 132 | ||||||||||| ||| || || || | || || || | | ||| | Sbjct 62 TGTTAAACAGTCGCCACCCCCT-GGCT-TGTGCCCCCCGCC---------CCTGGTTGCC 110 Query 133 CCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCAC 192 | || | || || ||||| ||||||||||| || | |||||||| |||||| | || Sbjct 111 CAAGAACGGGGCCCTCTTCTTCCGAAGTTACGAGGGTAATTTGCCGAGTTCCTTCAACAT 170 Query 193 AGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 ||| | | | |||||| |||| ||||||| | |||||||||||||||| |||| Sbjct 171 CATTCTCTCAAGCGCCTTGGTATACTCTACCAGTCCACCTGTGTCGGTTTGGGGTA 226 >seq193326 Length=1315 Score = 98.7 bits (108), Expect = 1e-18 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 |||| |||||| |||||||||||| || | |||||||| |||||| || | | |||| | Sbjct 1271 GCACACCTTCTTCCGAAGTTACGGTGCTAATTTGCCGAGTTCCTTCACGAGGGATCACTC 1212 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 |||||| | ||||||| || | | |||||||||||||||||||| Sbjct 1211 ACGCGCCTTGGAATTCTCTTCCCGTCTACCTGTGTCGGTTTACGGTA 1165 >seq226853 Length=20166 Score = 86.0 bits (94), Expect = 9e-15 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 154 CCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGT 213 ||||||||||||||| ||||||||| ||||||| | |||| | || | ||| || Sbjct 20048 CCGAAGTTACGGGGCTATTTTGCCGGGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGT 20107 Query 214 ATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 ||||||||||| |||||||||||||||| |||| Sbjct 20108 ATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 20142 >seq224050 Length=624 Score = 86.0 bits (94), Expect = 9e-15 Identities = 160/234 (68%), Gaps = 27/234 (12%) Strand=Plus/Plus Query 18 GGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGT 77 || || | |||| || ||||| ||| ||| || ||| ||| | |||||||||| | Sbjct 294 GGTCACGTGTCACACCCTATACGTCGTCTTCACGACTTTGCAGAGTGCTGTGTTTTTGTT 353 Query 78 AAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCACCAGC 137 ||||||||||| | | ||| ||| ||| ||||| | Sbjct 354 AAACAGTCGCTAAACGCAATTTACTGAGAC----------------------TCACC-GA 390 Query 138 AGTG-GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTT 196 |||| ||||| ||||||||||||||||| ||| | | |||||| ||||||| | ||| Sbjct 391 AGTGAGCACCTCTTCTCCCGAAGTTACGAGGCTAATGTGCCGAGTTCCTTAGAGAGGGTT 450 Query 197 CACCCGAACGCCTTAGTATTCTCTAC-CTGA-CCACCTGTGTCGGTTTACGGTA 248 | | || ||||| ||| || ||| || | |||||||||||||||||||||| Sbjct 451 CTCTCGCGCGCCTGAGTGCGCT-TACACTCACCCACCTGTGTCGGTTTACGGTA 503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692795691224