Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= AAMG01000567.1
Length=197
Score E
Sequences producing significant alignments: (Bits) Value
seq198914 105 7e-21
seq206697 96.9 4e-18
seq163170 93.3 4e-17
seq212791 86.0 7e-15
seq53398 80.6 3e-13
seq218687 77.0 3e-12
>seq198914
Length=2821
Score = 105 bits (116), Expect = 7e-21
Identities = 88/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81
|| |||||||||||||||| || ||||| ||||||||||||| |||| ||| || ||
Sbjct 316 CGTAAACGGACACACGTAGGCGAGTTGAGTATACTAAGGCGCGTGAGAGAACTTTGGCTA 257
Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTAC 129
||||||| ||||| | ||| ||||||||||||||| |||| || ||
Sbjct 256 AGGAACTCGGCAACATAGCCCCGTAACTTCGGGATAAGGGGTGCCCAC 209
>seq206697
Length=2363
Score = 96.9 bits (106), Expect = 4e-18
Identities = 133/181 (73%), Gaps = 9/181 (5%)
Strand=Plus/Minus
Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83
||||| |||||| || | | ||| || ||||| |||||||||||| |||| | | | |||
Sbjct 221 CAAACCGACACAGGTGGACTGGTAGAGTATACCAAGGCGCTTGAGAGAATGATGTTGAAG 162
Query 84 GAACTAGGCAAACTGACCCT-GTAACTTCGGGATAA-AGGGTCCC-TAC-----CCAGAA 135
||||| |||||| | ||||| |||||||||| | || |||| ||| | | | | |
Sbjct 161 GAACTCGGCAAA-TTACCCTCGTAACTTCGGAAGAAGAGGGCCCCGTTCTTGGGCAACCA 103
Query 136 ATGGGAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCA 195
|| ||| ||| | ||| ||| |||||||||||||||||||||||| ||| |
Sbjct 102 GGGGCGGGGGGCACAAGCCAGGGGGTGGCGACTGTTTAACAAAAACACAGGGCTCTGCGA 43
Query 196 A 196
|
Sbjct 42 A 42
>seq163170
Length=29127
Score = 93.3 bits (102), Expect = 4e-17
Identities = 87/110 (79%), Gaps = 2/110 (2%)
Strand=Plus/Minus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| |
Sbjct 22557 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 22500
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| || ||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 22499 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 22450
>seq212791
Length=233936
Score = 86.0 bits (94), Expect = 7e-15
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83
||||| |||||| || | || || ||||||| |||||||||| ||| || | |||
Sbjct 196567 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 196626
Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123
||||| |||||| |||||| |||||||||||| || ||||
Sbjct 196627 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 196666
>seq53398
Length=917
Score = 80.6 bits (88), Expect = 3e-13
Identities = 80/103 (78%), Gaps = 2/103 (2%)
Strand=Plus/Minus
Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141
||||||| |||||| | ||| |||||||| ||| || |||| ||| | || ||| |||
Sbjct 595 AGGAACTTGGCAAAATAGCCCCGTAACTTCAGGAGAAGGGGTGCCTCCTCACAAAGGGG- 537
Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACA 184
| | ||| || |||| | |||||||||||| ||||||||||
Sbjct 536 -GTCACAGTGACTAGGATCGGGCAACTGTTTACCAAAAACACA 495
>seq218687
Length=770
Score = 77.0 bits (84), Expect = 3e-12
Identities = 75/97 (77%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81
|| |||| |||||| |||| |||| ||| || || ||||||||||| ||| ||| |
Sbjct 251 CGTAAACCGACACAGGTAGGCGGGGTGAGAATCCTCAGGCGCTTGAGAGAACTCGGGTGA 192
Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118
||||||||||||| | | | |||||||||||| ||
Sbjct 191 AGGAACTAGGCAACATAGCACCGTAACTTCGGGAGAA 155
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 529972740752
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |