Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq198914 105 7e-21 seq206697 96.9 4e-18 seq163170 93.3 4e-17 seq212791 86.0 7e-15 seq53398 80.6 3e-13 seq218687 77.0 3e-12 >seq198914 Length=2821 Score = 105 bits (116), Expect = 7e-21 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 || |||||||||||||||| || ||||| ||||||||||||| |||| ||| || || Sbjct 316 CGTAAACGGACACACGTAGGCGAGTTGAGTATACTAAGGCGCGTGAGAGAACTTTGGCTA 257 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTAC 129 ||||||| ||||| | ||| ||||||||||||||| |||| || || Sbjct 256 AGGAACTCGGCAACATAGCCCCGTAACTTCGGGATAAGGGGTGCCCAC 209 >seq206697 Length=2363 Score = 96.9 bits (106), Expect = 4e-18 Identities = 133/181 (73%), Gaps = 9/181 (5%) Strand=Plus/Minus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | | ||| || ||||| |||||||||||| |||| | | | ||| Sbjct 221 CAAACCGACACAGGTGGACTGGTAGAGTATACCAAGGCGCTTGAGAGAATGATGTTGAAG 162 Query 84 GAACTAGGCAAACTGACCCT-GTAACTTCGGGATAA-AGGGTCCC-TAC-----CCAGAA 135 ||||| |||||| | ||||| |||||||||| | || |||| ||| | | | | | Sbjct 161 GAACTCGGCAAA-TTACCCTCGTAACTTCGGAAGAAGAGGGCCCCGTTCTTGGGCAACCA 103 Query 136 ATGGGAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCA 195 || ||| ||| | ||| ||| |||||||||||||||||||||||| ||| | Sbjct 102 GGGGCGGGGGGCACAAGCCAGGGGGTGGCGACTGTTTAACAAAAACACAGGGCTCTGCGA 43 Query 196 A 196 | Sbjct 42 A 42 >seq163170 Length=29127 Score = 93.3 bits (102), Expect = 4e-17 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 22557 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 22500 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 22499 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 22450 >seq212791 Length=233936 Score = 86.0 bits (94), Expect = 7e-15 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | || || ||||||| |||||||||| ||| || | ||| Sbjct 196567 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 196626 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| |||||| |||||| |||||||||||| || |||| Sbjct 196627 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 196666 >seq53398 Length=917 Score = 80.6 bits (88), Expect = 3e-13 Identities = 80/103 (78%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||||| |||||| | ||| |||||||| ||| || |||| ||| | || ||| ||| Sbjct 595 AGGAACTTGGCAAAATAGCCCCGTAACTTCAGGAGAAGGGGTGCCTCCTCACAAAGGGG- 537 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACA 184 | | ||| || |||| | |||||||||||| |||||||||| Sbjct 536 -GTCACAGTGACTAGGATCGGGCAACTGTTTACCAAAAACACA 495 >seq218687 Length=770 Score = 77.0 bits (84), Expect = 3e-12 Identities = 75/97 (77%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 || |||| |||||| |||| |||| ||| || || ||||||||||| ||| ||| | Sbjct 251 CGTAAACCGACACAGGTAGGCGGGGTGAGAATCCTCAGGCGCTTGAGAGAACTCGGGTGA 192 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 ||||||||||||| | | | |||||||||||| || Sbjct 191 AGGAACTAGGCAACATAGCACCGTAACTTCGGGAGAA 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529972740752