Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= AAMG01000599.1
Length=180
Score E
Sequences producing significant alignments: (Bits) Value
seq218687 159 3e-37
seq198914 107 2e-21
seq212791 87.8 2e-15
seq163170 87.8 2e-15
seq224050 80.6 3e-13
seq206697 78.8 9e-13
>seq218687
Length=770
Score = 159 bits (176), Expect = 3e-37
Identities = 105/115 (91%), Gaps = 1/115 (1%)
Strand=Plus/Minus
Query 43 TGCCGG-TCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAA 101
|||||| ||| || |||||||||||||||||||||| |||||||||| ||||||| ||
Sbjct 115 TGCCGGGTCGCAGTGACCAGGCCGCTGCGACTGTTTACCAAAAACACAGGACTCTGCGAA 56
Query 102 CACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGA 156
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 55 CACGAAAGTGGATGTATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAATTGA 1
>seq198914
Length=2821
Score = 107 bits (118), Expect = 2e-21
Identities = 74/84 (88%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 69 CGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGAC 128
|||||||||| ||||||||||| |||||| || || ||| |||||||||||| ||||
Sbjct 152 CGACTGTTTACTAAAAACACAGGGCTCTGCGAAGTCGCAAGACGACGTATAGGGTCTGAC 93
Query 129 GCCTGCCCGGTGCCGGAAGGTTAA 152
||||||||||||||||||||||||
Sbjct 92 GCCTGCCCGGTGCCGGAAGGTTAA 69
>seq212791
Length=233936
Score = 87.8 bits (96), Expect = 2e-15
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | ||||||||||||||||||||||| ||||||| || | || ||
Sbjct 196699 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 196758
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
|||||| || |||| |||||||||||| |||| || ||
Sbjct 196759 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCAA 196796
>seq163170
Length=29127
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 22497 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 22438
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 22437 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 22392
>seq224050
Length=624
Score = 80.6 bits (88), Expect = 3e-13
Identities = 70/86 (81%), Gaps = 1/86 (1%)
Strand=Plus/Minus
Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACG-AAAGTGGACGTATAGGGTGTG 126
||||||||||| ||||||||||||||||||||| || ||| |||||||||||||||
Sbjct 363 GCGACTGTTTAACAAAAACACAGCACTCTGCAAAGTCGTGAAGACGACGTATAGGGTGTG 304
Query 127 ACGCCTGCCCGGTGCCGGAAGGTTAA 152
|| | || || ||| | ||| ||||
Sbjct 303 ACACGTGACCAATGCGGAAAGATTAA 278
>seq206697
Length=2363
Score = 78.8 bits (86), Expect = 9e-13
Identities = 63/75 (84%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA-AAGTGGACGTATAGGGTGTG 126
||||||||||| |||||||||| |||||| || || ||| |||||||||||| ||
Sbjct 75 GCGACTGTTTAACAAAAACACAGGGCTCTGCGAAGCCGGTAAGGCGACGTATAGGGTCTG 16
Query 127 ACGCCTGCCCGGTGC 141
|||||||||||||||
Sbjct 15 ACGCCTGCCCGGTGC 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475698423928
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |