Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq218687 159 3e-37 seq198914 107 2e-21 seq212791 87.8 2e-15 seq163170 87.8 2e-15 seq224050 80.6 3e-13 seq206697 78.8 9e-13 >seq218687 Length=770 Score = 159 bits (176), Expect = 3e-37 Identities = 105/115 (91%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 43 TGCCGG-TCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAA 101 |||||| ||| || |||||||||||||||||||||| |||||||||| ||||||| || Sbjct 115 TGCCGGGTCGCAGTGACCAGGCCGCTGCGACTGTTTACCAAAAACACAGGACTCTGCGAA 56 Query 102 CACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGA 156 |||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 55 CACGAAAGTGGATGTATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAATTGA 1 >seq198914 Length=2821 Score = 107 bits (118), Expect = 2e-21 Identities = 74/84 (88%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 69 CGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGAC 128 |||||||||| ||||||||||| |||||| || || ||| |||||||||||| |||| Sbjct 152 CGACTGTTTACTAAAAACACAGGGCTCTGCGAAGTCGCAAGACGACGTATAGGGTCTGAC 93 Query 129 GCCTGCCCGGTGCCGGAAGGTTAA 152 |||||||||||||||||||||||| Sbjct 92 GCCTGCCCGGTGCCGGAAGGTTAA 69 >seq212791 Length=233936 Score = 87.8 bits (96), Expect = 2e-15 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||||||||||| ||||||| || | || || Sbjct 196699 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 196758 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||| || |||| |||||||||||| |||| || || Sbjct 196759 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCAA 196796 >seq163170 Length=29127 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 22497 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 22438 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 22437 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 22392 >seq224050 Length=624 Score = 80.6 bits (88), Expect = 3e-13 Identities = 70/86 (81%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACG-AAAGTGGACGTATAGGGTGTG 126 ||||||||||| ||||||||||||||||||||| || ||| ||||||||||||||| Sbjct 363 GCGACTGTTTAACAAAAACACAGCACTCTGCAAAGTCGTGAAGACGACGTATAGGGTGTG 304 Query 127 ACGCCTGCCCGGTGCCGGAAGGTTAA 152 || | || || ||| | ||| |||| Sbjct 303 ACACGTGACCAATGCGGAAAGATTAA 278 >seq206697 Length=2363 Score = 78.8 bits (86), Expect = 9e-13 Identities = 63/75 (84%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA-AAGTGGACGTATAGGGTGTG 126 ||||||||||| |||||||||| |||||| || || ||| |||||||||||| || Sbjct 75 GCGACTGTTTAACAAAAACACAGGGCTCTGCGAAGCCGGTAAGGCGACGTATAGGGTCTG 16 Query 127 ACGCCTGCCCGGTGC 141 ||||||||||||||| Sbjct 15 ACGCCTGCCCGGTGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475698423928