Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq163170 269 7e-70
seq212791 253 5e-65
seq218687 237 4e-60
seq224050 219 1e-54
seq198914 185 2e-44
seq203717 179 9e-43
seq208242 168 2e-39
seq206697 98.7 2e-18
seq193326 86.0 2e-14
seq174642 84.2 6e-14
seq55892 77.0 8e-12
seq162856 73.4 1e-10
>seq163170
Length=29127
Score = 269 bits (298), Expect = 7e-70
Identities = 308/418 (74%), Gaps = 27/418 (6%)
Strand=Plus/Plus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||||| || || ||||||| ||| ||| ||||||| ||| ||||||
Sbjct 22206 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 22265
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 22266 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 22325
Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188
| ||||||||||||||| |||||||||||| || ||| | | | || | |||
Sbjct 22326 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 22385
Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248
| || |||||||||||| |||||||||||| ||| |||| | ||| || |||
Sbjct 22386 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 22445
Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308
|| ||| |||||||||| ||||||||||| |||||||| || |||||
Sbjct 22446 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CC 22499
Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368
||| ||| | ||| | ||||||||||||||||||| || ||
Sbjct 22500 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 22542
Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426
||||| |||||||| ||||| |||| || ||| ||||||||||||| | ||||
Sbjct 22543 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 22600
>seq212791
Length=233936
Score = 253 bits (280), Expect = 5e-65
Identities = 303/412 (74%), Gaps = 21/412 (5%)
Strand=Plus/Minus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
||| | |||||||||| | || ||||||||||| | ||| | |||||||||| ||
Sbjct 196978 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 196919
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 196918 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 196859
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186
| |||| ||||| ||||||||||||||||||||| || | ||||| || | ||
Sbjct 196858 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTT----ATAAC--AC 196805
Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246
| | || || |||| |||||||||||| |||| || |||||| || || | |
Sbjct 196804 TTCTCCTTTTGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 196745
Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306
| ||||||| ||||||||||||||||||||||| | |||||||| | | | | |
Sbjct 196744 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTA 196685
Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366
| | | || || |||| ||||||||||||||||||| | |
Sbjct 196684 ATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCA 196640
Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418
||||||| ||||||||| | ||||||||||||||| | |||| ||||||
Sbjct 196639 TTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 196588
>seq218687
Length=770
Score = 237 bits (262), Expect = 4e-60
Identities = 197/233 (85%), Gaps = 7/233 (3%)
Strand=Plus/Plus
Query 191 TCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGC 250
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||
Sbjct 1 TCAATTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACATCCACTTTCGTGTTCGC 60
Query 251 AGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGA-CCGGCATGAGC 309
||||| |||||||||| |||||||||||||||||||||| || ||| |||||| ||
Sbjct 61 AGAGTCCTGTGTTTTTGGTAAACAGTCGCAGCGGCCTGGTCACTGCGACCCGGCA-ACGC 119
Query 310 TTA-CGGAGCAAGTCCTTCACCCTCACC-GGCGCACCTTCTCCCGAAGTTACGGTGCCTT 367
| | | ||| || | | || || |||||||||||||||||||||||||||| |
Sbjct 120 TCAGCCACGCACGT--GGCCACGTCGCCGGGCGCACCTTCTCCCGAAGTTACGGTGCTAT 177
Query 368 TTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCC 420
||||||||||||||| ||||||||||||||||||||| | |||||| ||||
Sbjct 178 GTTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTGAGGATTCTC-ACCC 229
>seq224050
Length=624
Score = 219 bits (242), Expect = 1e-54
Identities = 214/271 (79%), Gaps = 5/271 (2%)
Strand=Plus/Plus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGG-TGGAGACAGCGCCGCCATCGT 71
|||||||||| | ||| | |||||| ||| || | | ||||||| || | ||||
Sbjct 94 GCATCTTCACCGGTATTGTATTTTCACCGAG-CTAGTCCTCGAGACAGTTCCCCAGTCGT 152
Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131
||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 153 TACACCATTCGTGCGCGTCAGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 212
Query 132 ATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT--AGCTAACCCC 189
|| |||||||||| | || || ||| ||| || ||||||||| || ||||||||
Sbjct 213 ATAGTTACGGCCGACATTCACGGGGACTTGGACACCGAGCTTCGCCTTGCGGCTAACCCA 272
Query 190 ATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT-TCGTGTTT 248
|| |||| ||| | ||| || || | ||||||||||||||||| ||| || |||
Sbjct 273 ATGCTTTAATCTTTCCGCATTGGTCACGTGTCACACCCTATACGTCGTCTTCACGACTTT 332
Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279
|||||||||||||||||| |||||||||||
Sbjct 333 GCAGAGTGCTGTGTTTTTGTTAAACAGTCGC 363
>seq198914
Length=2821
Score = 185 bits (204), Expect = 2e-44
Identities = 219/294 (74%), Gaps = 11/294 (4%)
Strand=Plus/Plus
Query 135 GTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT-------AGC-TAAC 186
|||||||||||||||||||||||||||| | ||||||| | | || ||||
Sbjct 1 GTTACGGCCGCCGTTTACCGGGGCTTCGGTTCTGAGCTTCTCCTGGCGAACCAGAATAAC 60
Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246
||| | |||||||||||||||||||||||||||| |||||||||||| ||| || |
Sbjct 61 CCCTCCCCTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTGCGACT 120
Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306
| |||||| ||||||||||| |||||||||| | |||| | || |||| | |
Sbjct 121 TCGCAGAGCCCTGTGTTTTTAGTAAACAGTCGTCACCGCCTCTTTACTGTGACCCACTTC 180
Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCA--CCGGCGCACCTTCTCCCGAAGTTACGGTGC 364
|||| | ||| | | | || ||| | ||| | |||| |||||||||||||| ||
Sbjct 181 GGCTTCAGCCGCAGGGCTTACA-CCTGATGTGGGCACCCCTTATCCCGAAGTTACGGGGC 239
Query 365 CTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418
| ||||| |||||||| || |||||||||| ||||||| |||| ||| ||
Sbjct 240 TATGTTGCCGAGTTCCTTAGCCAAAGTTCTCTCACGCGCCTTAGTATACTCAAC 293
>seq203717
Length=542
Score = 179 bits (198), Expect = 9e-43
Identities = 126/141 (89%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 13 GCATCTTCAC-AGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71
|||||||||| |||| | || ||| ||||| | | |||||||||||||| |||||
Sbjct 403 GCATCTTCACCAGCGCTA-CAGATTCGCTGAGCCCCTCGTGGAGACAGCGCCCAAATCGT 461
Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 521
Query 132 ATTGTTACGGCCGCCGTTTAC 152
|| ||||||||||||||||||
Sbjct 522 ATAGTTACGGCCGCCGTTTAC 542
>seq208242
Length=245
Score = 168 bits (186), Expect = 2e-39
Identities = 128/151 (85%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCG 61
|||| ||| | || ||||||| | | ||||||| ||||| | || |||||||||
Sbjct 151 GCGGGTACCCGGCGTCTTCACCGGAACCACAATTTCGCTGAGCATTTGGCCGAGACAGCG 92
Query 62 CCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 121
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 91 GGGCAGTCGTTACGCCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 32
Query 122 TAGGACCGTTATTGTTACGGCCGCCGTTTAC 152
|||||||||||| ||||||||||||||||||
Sbjct 31 TAGGACCGTTATAGTTACGGCCGCCGTTTAC 1
>seq206697
Length=2363
Score = 98.7 bits (108), Expect = 2e-18
Identities = 152/216 (70%), Gaps = 17/216 (8%)
Strand=Plus/Plus
Query 206 GCACCGGGCAGGCGTCACACCCTATACGTCCACTT-TCGTGTTTGCAGAGTGCTGTGTTT 264
||||||||||||||||| |||||||||||| ||| || || |||||| ||||||||
Sbjct 1 GCACCGGGCAGGCGTCAGACCCTATACGTCGCCTTACCGGCTTCGCAGAGCCCTGTGTTT 60
Query 265 TTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAGCAAGTCC 324
|| ||||||||||| | ||||| | | | || || | || | ||||
Sbjct 61 TTGTTAAACAGTCGCCACCCCCTGGCTTGTGCCCCCCGCCCCTGGTT---GCCCAAG--- 114
Query 325 TTCACCCTCACCGGCGCAC-CTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTC 383
| ||| || | ||||| ||||||||||| | |||||| |||||||||
Sbjct 115 ---------AACGGGGCCCTCTTCTTCCGAAGTTACGAGGGTAATTTGCCGAGTTCCTTC 165
Query 384 CCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419
| ||||||||||||||||||||| |||||||
Sbjct 166 AACATCATTCTCTCAAGCGCCTTGGTATACTCTACC 201
>seq193326
Length=1315
Score = 86.0 bits (94), Expect = 2e-14
Identities = 71/87 (82%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 334 ACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTC 393
||| || |||||||| ||||||||||||||| |||||| ||||||||| | | | ||
Sbjct 1275 ACCAGCACACCTTCTTCCGAAGTTACGGTGCTAATTTGCCGAGTTCCTTCACGAGGGATC 1216
Query 394 TCTCAAGCGCCTTGGTATTCTCTACCC 420
|||| ||||||||| ||||||| |||
Sbjct 1215 ACTCACGCGCCTTGGAATTCTCTTCCC 1189
>seq174642
Length=258
Score = 84.2 bits (92), Expect = 6e-14
Identities = 73/91 (80%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCG 61
|||| || | |||||||||| | ||||||||||| ||||||| ||| ||||||| |
Sbjct 168 GCGGGTAGCCGGCATCTTCACCGGCATTTCAATTTCGCTGAGTCCGTGGTTGAGACAGTG 227
Query 62 CCGCCATCGTTACGCCATTCGTGCAGGTCGG 92
| |||||||||||||||||||||||||
Sbjct 228 GGGAAGTCGTTACGCCATTCGTGCAGGTCGG 258
>seq55892
Length=3036
Score = 77.0 bits (84), Expect = 8e-12
Identities = 88/117 (75%), Gaps = 1/117 (1%)
Strand=Plus/Minus
Query 33 ATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGG 92
||||||| || ||| | ||| || ||| ||||||| || | || ||||| |
Sbjct 1428 ATTTCACCGAACCTCTTTTCGAGGTAGTGCCTGGATCGTTATGCTTTATGTATAGGTCAG 1369
Query 93 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTT 149
|||||||| ||||| |||||| ||||||||||||| ||||| || || |||||| ||
Sbjct 1368 AACTTACCTGACAAAGAATTTTGCTACCTTAGGACTGTTATAGTCAC-GCCGCCATT 1313
>seq162856
Length=764
Score = 73.4 bits (80), Expect = 1e-10
Identities = 67/85 (79%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||| | | | ||| ||| ||| | | | || ||||||| || ||||||
Sbjct 489 GCATCTTCACCGGTACTACAAGTTCGCTGTGCCGCTCGTTAAGACAGCTCCCAGATCGTT 548
Query 73 ACGCCATTCGTGCAGGTCGGAACTT 97
|||||||||||||||||||||||||
Sbjct 549 ACGCCATTCGTGCAGGTCGGAACTT 573
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1257793143296
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