Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq163170 269 7e-70 seq212791 253 5e-65 seq218687 237 4e-60 seq224050 219 1e-54 seq198914 185 2e-44 seq203717 179 9e-43 seq208242 168 2e-39 seq206697 98.7 2e-18 seq193326 86.0 2e-14 seq174642 84.2 6e-14 seq55892 77.0 8e-12 seq162856 73.4 1e-10 >seq163170 Length=29127 Score = 269 bits (298), Expect = 7e-70 Identities = 308/418 (74%), Gaps = 27/418 (6%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 22206 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 22265 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 22266 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 22325 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 22326 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 22385 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 22386 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 22445 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 22446 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CC 22499 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | ||| | ||||||||||||||||||| || || Sbjct 22500 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 22542 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 22543 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 22600 >seq212791 Length=233936 Score = 253 bits (280), Expect = 5e-65 Identities = 303/412 (74%), Gaps = 21/412 (5%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 196978 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 196919 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 196918 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 196859 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||||||||||||||||||| || | ||||| || | || Sbjct 196858 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTT----ATAAC--AC 196805 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | || || |||| |||||||||||| |||| || |||||| || || | | Sbjct 196804 TTCTCCTTTTGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 196745 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 | ||||||| ||||||||||||||||||||||| | |||||||| | | | | | Sbjct 196744 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTA 196685 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 | | | || || |||| ||||||||||||||||||| | | Sbjct 196684 ATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCA 196640 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 ||||||| ||||||||| | ||||||||||||||| | |||| |||||| Sbjct 196639 TTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 196588 >seq218687 Length=770 Score = 237 bits (262), Expect = 4e-60 Identities = 197/233 (85%), Gaps = 7/233 (3%) Strand=Plus/Plus Query 191 TCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGC 250 |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| || Sbjct 1 TCAATTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACATCCACTTTCGTGTTCGC 60 Query 251 AGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGA-CCGGCATGAGC 309 ||||| |||||||||| |||||||||||||||||||||| || ||| |||||| || Sbjct 61 AGAGTCCTGTGTTTTTGGTAAACAGTCGCAGCGGCCTGGTCACTGCGACCCGGCA-ACGC 119 Query 310 TTA-CGGAGCAAGTCCTTCACCCTCACC-GGCGCACCTTCTCCCGAAGTTACGGTGCCTT 367 | | | ||| || | | || || |||||||||||||||||||||||||||| | Sbjct 120 TCAGCCACGCACGT--GGCCACGTCGCCGGGCGCACCTTCTCCCGAAGTTACGGTGCTAT 177 Query 368 TTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCC 420 ||||||||||||||| ||||||||||||||||||||| | |||||| |||| Sbjct 178 GTTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTGAGGATTCTC-ACCC 229 >seq224050 Length=624 Score = 219 bits (242), Expect = 1e-54 Identities = 214/271 (79%), Gaps = 5/271 (2%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGG-TGGAGACAGCGCCGCCATCGT 71 |||||||||| | ||| | |||||| ||| || | | ||||||| || | |||| Sbjct 94 GCATCTTCACCGGTATTGTATTTTCACCGAG-CTAGTCCTCGAGACAGTTCCCCAGTCGT 152 Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131 ||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 153 TACACCATTCGTGCGCGTCAGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 212 Query 132 ATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT--AGCTAACCCC 189 || |||||||||| | || || ||| ||| || ||||||||| || |||||||| Sbjct 213 ATAGTTACGGCCGACATTCACGGGGACTTGGACACCGAGCTTCGCCTTGCGGCTAACCCA 272 Query 190 ATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT-TCGTGTTT 248 || |||| ||| | ||| || || | ||||||||||||||||| ||| || ||| Sbjct 273 ATGCTTTAATCTTTCCGCATTGGTCACGTGTCACACCCTATACGTCGTCTTCACGACTTT 332 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 |||||||||||||||||| ||||||||||| Sbjct 333 GCAGAGTGCTGTGTTTTTGTTAAACAGTCGC 363 >seq198914 Length=2821 Score = 185 bits (204), Expect = 2e-44 Identities = 219/294 (74%), Gaps = 11/294 (4%) Strand=Plus/Plus Query 135 GTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT-------AGC-TAAC 186 |||||||||||||||||||||||||||| | ||||||| | | || |||| Sbjct 1 GTTACGGCCGCCGTTTACCGGGGCTTCGGTTCTGAGCTTCTCCTGGCGAACCAGAATAAC 60 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 ||| | |||||||||||||||||||||||||||| |||||||||||| ||| || | Sbjct 61 CCCTCCCCTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTGCGACT 120 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 | |||||| ||||||||||| |||||||||| | |||| | || |||| | | Sbjct 121 TCGCAGAGCCCTGTGTTTTTAGTAAACAGTCGTCACCGCCTCTTTACTGTGACCCACTTC 180 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCA--CCGGCGCACCTTCTCCCGAAGTTACGGTGC 364 |||| | ||| | | | || ||| | ||| | |||| |||||||||||||| || Sbjct 181 GGCTTCAGCCGCAGGGCTTACA-CCTGATGTGGGCACCCCTTATCCCGAAGTTACGGGGC 239 Query 365 CTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 | ||||| |||||||| || |||||||||| ||||||| |||| ||| || Sbjct 240 TATGTTGCCGAGTTCCTTAGCCAAAGTTCTCTCACGCGCCTTAGTATACTCAAC 293 >seq203717 Length=542 Score = 179 bits (198), Expect = 9e-43 Identities = 126/141 (89%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 13 GCATCTTCAC-AGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71 |||||||||| |||| | || ||| ||||| | | |||||||||||||| ||||| Sbjct 403 GCATCTTCACCAGCGCTA-CAGATTCGCTGAGCCCCTCGTGGAGACAGCGCCCAAATCGT 461 Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 462 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 521 Query 132 ATTGTTACGGCCGCCGTTTAC 152 || |||||||||||||||||| Sbjct 522 ATAGTTACGGCCGCCGTTTAC 542 >seq208242 Length=245 Score = 168 bits (186), Expect = 2e-39 Identities = 128/151 (85%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCG 61 |||| ||| | || ||||||| | | ||||||| ||||| | || ||||||||| Sbjct 151 GCGGGTACCCGGCGTCTTCACCGGAACCACAATTTCGCTGAGCATTTGGCCGAGACAGCG 92 Query 62 CCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 121 || |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 91 GGGCAGTCGTTACGCCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 32 Query 122 TAGGACCGTTATTGTTACGGCCGCCGTTTAC 152 |||||||||||| |||||||||||||||||| Sbjct 31 TAGGACCGTTATAGTTACGGCCGCCGTTTAC 1 >seq206697 Length=2363 Score = 98.7 bits (108), Expect = 2e-18 Identities = 152/216 (70%), Gaps = 17/216 (8%) Strand=Plus/Plus Query 206 GCACCGGGCAGGCGTCACACCCTATACGTCCACTT-TCGTGTTTGCAGAGTGCTGTGTTT 264 ||||||||||||||||| |||||||||||| ||| || || |||||| |||||||| Sbjct 1 GCACCGGGCAGGCGTCAGACCCTATACGTCGCCTTACCGGCTTCGCAGAGCCCTGTGTTT 60 Query 265 TTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAGCAAGTCC 324 || ||||||||||| | ||||| | | | || || | || | |||| Sbjct 61 TTGTTAAACAGTCGCCACCCCCTGGCTTGTGCCCCCCGCCCCTGGTT---GCCCAAG--- 114 Query 325 TTCACCCTCACCGGCGCAC-CTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTC 383 | ||| || | ||||| ||||||||||| | |||||| ||||||||| Sbjct 115 ---------AACGGGGCCCTCTTCTTCCGAAGTTACGAGGGTAATTTGCCGAGTTCCTTC 165 Query 384 CCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 | ||||||||||||||||||||| ||||||| Sbjct 166 AACATCATTCTCTCAAGCGCCTTGGTATACTCTACC 201 >seq193326 Length=1315 Score = 86.0 bits (94), Expect = 2e-14 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 334 ACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTC 393 ||| || |||||||| ||||||||||||||| |||||| ||||||||| | | | || Sbjct 1275 ACCAGCACACCTTCTTCCGAAGTTACGGTGCTAATTTGCCGAGTTCCTTCACGAGGGATC 1216 Query 394 TCTCAAGCGCCTTGGTATTCTCTACCC 420 |||| ||||||||| ||||||| ||| Sbjct 1215 ACTCACGCGCCTTGGAATTCTCTTCCC 1189 >seq174642 Length=258 Score = 84.2 bits (92), Expect = 6e-14 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCG 61 |||| || | |||||||||| | ||||||||||| ||||||| ||| ||||||| | Sbjct 168 GCGGGTAGCCGGCATCTTCACCGGCATTTCAATTTCGCTGAGTCCGTGGTTGAGACAGTG 227 Query 62 CCGCCATCGTTACGCCATTCGTGCAGGTCGG 92 | ||||||||||||||||||||||||| Sbjct 228 GGGAAGTCGTTACGCCATTCGTGCAGGTCGG 258 >seq55892 Length=3036 Score = 77.0 bits (84), Expect = 8e-12 Identities = 88/117 (75%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 33 ATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGG 92 ||||||| || ||| | ||| || ||| ||||||| || | || ||||| | Sbjct 1428 ATTTCACCGAACCTCTTTTCGAGGTAGTGCCTGGATCGTTATGCTTTATGTATAGGTCAG 1369 Query 93 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTT 149 |||||||| ||||| |||||| ||||||||||||| ||||| || || |||||| || Sbjct 1368 AACTTACCTGACAAAGAATTTTGCTACCTTAGGACTGTTATAGTCAC-GCCGCCATT 1313 >seq162856 Length=764 Score = 73.4 bits (80), Expect = 1e-10 Identities = 67/85 (79%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | | | ||| ||| ||| | | | || ||||||| || |||||| Sbjct 489 GCATCTTCACCGGTACTACAAGTTCGCTGTGCCGCTCGTTAAGACAGCTCCCAGATCGTT 548 Query 73 ACGCCATTCGTGCAGGTCGGAACTT 97 ||||||||||||||||||||||||| Sbjct 549 ACGCCATTCGTGCAGGTCGGAACTT 573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1257793143296