Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq163170 338 1e-90 seq212791 268 2e-69 seq224050 242 8e-62 seq203717 183 6e-44 seq208242 168 1e-39 seq198914 152 1e-34 seq218687 111 3e-22 seq55892 95.1 3e-17 seq174642 93.3 9e-17 seq206697 87.8 4e-15 seq162856 87.8 4e-15 seq53398 75.2 2e-11 >seq163170 Length=29127 Score = 338 bits (374), Expect = 1e-90 Identities = 289/353 (82%), Gaps = 8/353 (2%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 22206 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 22265 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 22266 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 22325 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||| | | | || | || Sbjct 22326 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 22385 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 22386 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 22445 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCA 299 || || ||||||||||||||||||||||||| |||||| || ||||| ||| | Sbjct 22446 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGT 22505 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 22506 GAG-GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 22557 >seq212791 Length=233936 Score = 268 bits (296), Expect = 2e-69 Identities = 285/376 (76%), Gaps = 20/376 (5%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 196978 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 196919 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 196918 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 196859 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||| ||||||| |||| ||| | |||| Sbjct 196858 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATAAC 196807 Query 181 AGATCCCC--TTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | || || || || ||||||||||||||||| ||||| ||||||||||| || | | Sbjct 196806 ACTTCTCCTTTTGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 196747 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 ||||||||| ||||||||||| |||||||||||| ||| | | ||| || | | Sbjct 196746 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 196687 Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 | ||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 196686 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTC 196627 Query 349 CTTAACAATAGTTCTC 364 ||| || |||||| Sbjct 196626 CTTCGACATGGTTCTC 196611 >seq224050 Length=624 Score = 242 bits (268), Expect = 8e-62 Identities = 277/361 (77%), Gaps = 16/361 (4%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTA-TTGTTGAGACAGTGCCCA 59 || |||||||||||||||| ||| | |||||||||| ||| | | |||||||| ||| Sbjct 88 TAACCGGCATCTTCACCGGTATTGTATTTTCACCGAG-CTAGTCCTCGAGACAGTTCCCC 146 Query 60 AATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 119 | ||||||| || |||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 147 AGTCGTTACACCATTCGTGCGCGTCAGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 206 Query 120 ACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCAC--TGCTTCG-ATTGC-T 175 ||||||||||||||||||| | || || ||| ||| | ||| |||||| |||| Sbjct 207 ACCGTTATAGTTACGGCCGACATTCACGGGGACTT--GGACACCGAGCTTCGCCTTGCGG 264 Query 176 CTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTT- 234 ||||| | | |||| ||| | ||| || || | |||| ||||||| ||||||| Sbjct 265 CTAACCCAATGCTTTAATCTTTCCGCATTGGTCACGTGTCACACCCTATACGTCGTCTTC 324 Query 235 GCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC 294 |||||| ||||| ||||||||||| |||||||||||| | ||| ||| | | Sbjct 325 ACGACTTTGCAGAGTGCTGTGTTTTTGTTAAACAGTCGCTAAACGCAATTTACTGAGAC- 383 Query 295 TGTCATAGACAG---GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTT 351 ||| || || ||||| |||||||| |||||||| || | | ||||||||||||| Sbjct 384 --TCACCGA-AGTGAGCACCTCTTCTCCCGAAGTTACGAGGCTAATGTGCCGAGTTCCTT 440 Query 352 A 352 | Sbjct 441 A 441 >seq203717 Length=542 Score = 183 bits (202), Expect = 6e-44 Identities = 125/141 (89%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 6 GGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGT 65 |||||||||||| | |||| ||| | ||| | | || ||||||| ||||||||||| Sbjct 402 GGCATCTTCACCAGCGCTACAGATTCGCTGAGCCCCTCGTGGAGACAGCGCCCAAATCGT 461 Query 66 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 125 |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 462 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 521 Query 126 ATAGTTACGGCCGCCGTTTAC 146 ||||||||||||||||||||| Sbjct 522 ATAGTTACGGCCGCCGTTTAC 542 >seq208242 Length=245 Score = 168 bits (186), Expect = 1e-39 Identities = 125/146 (86%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 |||||||| |||||||||| | |||||||| | ||| | | | ||||||| | | Sbjct 146 TACCCGGCGTCTTCACCGGAACCACAATTTCGCTGAGCATTTGGCCGAGACAGCGGGGCA 87 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 |||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 86 GTCGTTACGCCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 27 Query 121 CCGTTATAGTTACGGCCGCCGTTTAC 146 |||||||||||||||||||||||||| Sbjct 26 CCGTTATAGTTACGGCCGCCGTTTAC 1 >seq198914 Length=2821 Score = 152 bits (168), Expect = 1e-34 Identities = 194/270 (72%), Gaps = 34/270 (13%) Strand=Plus/Plus Query 129 GTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGA----- 183 |||||||||||||||||| ||||||| |||| ||||| || | |||| Sbjct 1 GTTACGGCCGCCGTTTACCGGGGCTTCGGTTCTGAGCTTCTCCTGGCGAACCAGAATAAC 60 Query 184 ---TCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 ||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||| Sbjct 61 CCCTCCCCTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTGCGACT 120 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCG-------CT--------TGGGCCTATTC 285 | ||||| ||||||||||| ||||||||||| || || || ||| Sbjct 121 TCGCAGAGCCCTGTGTTTTTAGTAAACAGTCGTCACCGCCTCTTTACTGTGACCCACTTC 180 Query 286 ----TCTGCGGCCTGTCATAGAC-------AGGCACCCCTTCTCCCTAAGTTACGGGGTC 334 || || || | | || || |||||||||| |||| ||||||||||| Sbjct 181 GGCTTCAGCCGCAGGGCTTACACCTGATGTGGGCACCCCTTATCCCGAAGTTACGGGGCT 240 Query 335 ATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 || ||||||||||||||| | | ||||||| Sbjct 241 ATGTTGCCGAGTTCCTTAGCCAAAGTTCTC 270 >seq218687 Length=770 Score = 111 bits (122), Expect = 3e-22 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 189 TTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAA 248 |||||||||| |||||||||||||||||| |||||||||| ||| || || ||||| Sbjct 5 TTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACATCCACTTTCGTGTTCGCAGAG 64 Query 249 ACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC 294 |||||||||||||||||||||||| ||||| || ||||| || Sbjct 65 TCCTGTGTTTTTGGTAAACAGTCGCAGCGGCCTGGTCACTGCGACC 110 >seq55892 Length=3036 Score = 95.1 bits (104), Expect = 3e-17 Identities = 92/117 (79%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 27 ATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGG 86 |||||||||| || || | ||| |||||| ||||||| || || || |||| | Sbjct 1428 ATTTCACCGAACCTCTTTTCGAGGTAGTGCCTGGATCGTTATGCTTTATGTATAGGTCAG 1369 Query 87 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTT 143 |||||||| ||||| |||||| ||||||||||||| |||||||| || |||||| || Sbjct 1368 AACTTACCTGACAAAGAATTTTGCTACCTTAGGACTGTTATAGTCAC-GCCGCCATT 1313 >seq174642 Length=258 Score = 93.3 bits (102), Expect = 9e-17 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 || |||||||||||||||| ||| ||||||| | ||||| | |||||||||||| || Sbjct 173 TAGCCGGCATCTTCACCGGCATTTCAATTTCGCTGAGTCCGTGGTTGAGACAGTGGGGAA 232 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGG 86 |||||||||| ||||||| |||||| Sbjct 233 GTCGTTACGCCATTCGTGCAGGTCGG 258 >seq206697 Length=2363 Score = 87.8 bits (96), Expect = 4e-15 Identities = 123/169 (73%), Gaps = 13/169 (8%) Strand=Plus/Plus Query 200 GCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGC-GACTTAGCAGAAACCTGTGTTT 258 |||||||||||||||||| ||||||| ||| ||| | | ||| ||||| ||||||||| Sbjct 1 GCACCGGGCAGGCGTCAGACCCTATACGTCGCCTTACCGGCTTCGCAGAGCCCTGTGTTT 60 Query 259 TTGGTAAACAGTCG-----CTTGGGCCTATTCTCTGCGGCC-----TGTCATAG-ACAGG 307 ||| |||||||||| | ||| | | | | || || || | || || || Sbjct 61 TTGTTAAACAGTCGCCACCCCCTGGCTTGTGCCCCCCGCCCCTGGTTGCCCAAGAACGGG 120 Query 308 CACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTT-AACA 355 || ||||| || |||||||| || | ||||||||||||||| |||| Sbjct 121 GCCCTCTTCTTCCGAAGTTACGAGGGTAATTTGCCGAGTTCCTTCAACA 169 >seq162856 Length=764 Score = 87.8 bits (96), Expect = 4e-15 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 4 CCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATC 63 |||||||||||||||| | ||||| ||| | | | | | ||| |||||| |||| ||| Sbjct 486 CCGGCATCTTCACCGGTACTACAAGTTCGCTGTGCCGCTCGTTAAGACAGCTCCCAGATC 545 Query 64 GTTACGCCTTTCGTGCGGGTCGGAACTT 91 |||||||| ||||||| ||||||||||| Sbjct 546 GTTACGCCATTCGTGCAGGTCGGAACTT 573 >seq53398 Length=917 Score = 75.2 bits (82), Expect = 2e-11 Identities = 79/102 (77%), Gaps = 4/102 (4%) Strand=Plus/Plus Query 252 TGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC---TGTCATAGACAGGC 308 ||||||||||||||||||| || | |||| || ||| | || | | || |||| Sbjct 495 TGTGTTTTTGGTAAACAGTTGCCCGATCCTAGTCACTGTGACCCCCTTTGTGAGG-AGGC 553 Query 309 ACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCT 350 ||||||||||| ||||||||||| |||||||| ||||||| Sbjct 554 ACCCCTTCTCCTGAAGTTACGGGGCTATTTTGCCAAGTTCCT 595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1059866303488