Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq163170 480 2e-133
seq198914 233 6e-59
seq16346 223 1e-55
seq212791 197 4e-48
seq189298 190 6e-46
seq170001 178 4e-42
seq229289 143 8e-32
seq11807 131 5e-28
seq231621 111 5e-22
seq218629 95.1 4e-17
seq226990 93.3 1e-16
seq111570 93.3 1e-16
seq218653 89.7 2e-15
>seq163170
Length=29127
Score = 480 bits (532), Expect = 2e-133
Identities = 407/497 (82%), Gaps = 3/497 (1%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 27334 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 27275
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
|||||||||||||| |||| |||||||||||||||| |||||||| | || ||||
Sbjct 27274 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 27215
Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180
| || | ||||| | || |||||| || | ||||||| ||||||| |||||||||
Sbjct 27214 TTGAAAGAGAGGGGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 27157
Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240
|||||| ||| || ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 27156 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGCTTAGTTGC 27097
Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300
|| | | |||| || || || || |||||||||||| || ||||||||||||| |||
Sbjct 27096 CACCGTCGAGTTTGGAACCCTGAGCAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 27037
Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360
|||||||| ||||||||||||||||| ||||| |||||||||||||||||| | ||
Sbjct 27036 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 26977
Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420
|||||| |||| |||||||| ||| || ||| ||| || ||||||||||||||
Sbjct 26976 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 26917
Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479
|| |||||||||| || ||||||| ||||||||||||||||| | |||| ||| |
Sbjct 26916 CAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 26857
Query 480 CGGTGAATACGTTCCCG 496
|||||||| ||||||||
Sbjct 26856 CGGTGAATTCGTTCCCG 26840
>seq198914
Length=2821
Score = 233 bits (258), Expect = 6e-59
Identities = 177/206 (86%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 293 GTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATG 352
|||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 2821 GTGGGGACGACGTCAAGTCATCATGGCCCTTATGTCCAGGGCTACACACGTGCTACAATG 2762
Query 353 GACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCAT-AAAGTTGTTCTCAG 411
| | |||||||||| || |||||| |||| ||| |||||||| ||||| ||||||
Sbjct 2761 GCCGATACAAAGGGTTGCAAAACCGTGAGGCGGAGCCAATCCCATCAAAGTCAGTCTCAG 2702
Query 412 TTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCA 471
|||||||||||| |||||||||| || |||||| ||||||||||||||||||| |||||
Sbjct 2701 TTCGGATTGTAGGCTGCAACTCGCCTGCATGAAGTTGGAATCGCTAGTAATCGTGGATCA 2642
Query 472 GC-ATGCTACGGTGAATACGTTCCCG 496
|| | || ||||||||||||||||||
Sbjct 2641 GCAACGCCACGGTGAATACGTTCCCG 2616
>seq16346
Length=2555
Score = 223 bits (246), Expect = 1e-55
Identities = 324/452 (72%), Gaps = 7/452 (2%)
Strand=Plus/Minus
Query 15 TGAAACTCAAAGG-AATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCG 73
||||||||||| | ||||||| ||| || ||| |||||||||||||| | |||||||||
Sbjct 1172 TGAAACTCAAAAGCAATTGACAGGGGCCTGCATAAGCGGTGGAGCATCTAGTTTAATTCA 1113
Query 74 AAGCAACGCGAAGAACCTTACCAAATCTTGACAT-CCTCTGACCCCTCTAGAGATAGAGG 132
| |||| | ||||||||| | |||||||| || || || || || | |||
Sbjct 1112 ATGCAAAGTGAAGAACCTACCTGGGGCTTGACATGCCGGGGAATCCCCTTGAAGGACAGG 1053
Query 133 TTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGA 192
| || | || || | | ||||| |||||| | |||||| ||| || | | |
Sbjct 1052 AGTGCCTTAAGGA--ACGCGGGAATAGGTGGTGCATGTCTATCGTCAACTC-TGCCATAA 996
Query 193 GATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTT 252
| |||||| ||||| |||||| | |||||||| |||||| ||||| | | || ||
Sbjct 995 GGTGTTGGATTAAGGTTCGCAACAATTGCAACCCTCGTGCTTAGCTGCCACCTTCAAATT 936
Query 253 GGGCACTCTAAGTTGACTGCCGGTGACAAA--CCGGAGGAAGGTGGGGACGACGTCAAAT 310
|| || || || | || | |||| | | ||| || |||||| || || ||||| |
Sbjct 935 TGGAACCCTGAGCAGGCTATCAGTGATATAAGCCGAAGAAAGGTGATGATGATGTCAAGT 876
Query 311 CATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGC 370
|||| ||||||||||| |||||| ||||||||| |||||||| || ||||||| |
Sbjct 875 CATCGTGCCCCTTATGCCTTGGGCAACACACGTGTTACAATGGCCAGGCCAAAGGGTCGA 816
Query 371 GAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAA 430
|| ||| ||| ||| || ||| || | ||||| | ||||||||| | ||||||
Sbjct 815 GATCTCGCAAGGGTGAGCTAACTCCAAGAATTCGTTCTTAATTCGGATTGAAAGCTGCAA 756
Query 431 CTCGACTATATGAAGCTGGAATCGCTAGTAAT 462
|||| | | |||||||||||||||||||||
Sbjct 755 CTCGCTTGCACGAAGCTGGAATCGCTAGTAAT 724
>seq212791
Length=233936
Score = 197 bits (218), Expect = 4e-48
Identities = 186/236 (79%), Gaps = 1/236 (0%)
Strand=Plus/Plus
Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326
||||||| |||| | || ||||||||||||||| |||||||| || |||| ||||||||
Sbjct 166266 GACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 166325
Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386
||||| |||||||||||||||||| | ||||| ||| ||| | | | ||| |
Sbjct 166326 GGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGA 166385
Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446
|| ||| || |||| | ||||||||||||||| ||||||||||| | ||||||
Sbjct 166386 GCGAAT-CCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGT 166444
Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502
|||||||||||||||||| ||||||||||| ||||||||| || |||| ||||
Sbjct 166445 TGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 166500
Score = 163 bits (180), Expect = 9e-38
Identities = 177/234 (76%), Gaps = 17/234 (7%)
Strand=Plus/Plus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 165631 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 165690
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
|||||||||||||| ||||||| | |||||||||| ||||||| | |||
Sbjct 165691 GTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACA---TATGA------ 165741
Query 121 TAGAGATAGAGGTTTCCCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTG 173
| | | | | ||| ||| || || | | ||||||| ||||||| ||
Sbjct 165742 -ACAACAAAACCTGTCCTTAACGGGATGGTACTTACTTTCATACAGGTGCTGCATGGCTG 165800
Query 174 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227
||||||||||||||||||||||||| ||| |||||| |||||||| ||||||
Sbjct 165801 TCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCT 165854
>seq189298
Length=944
Score = 190 bits (210), Expect = 6e-46
Identities = 191/247 (77%), Gaps = 1/247 (0%)
Strand=Plus/Minus
Query 251 TTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAAT 310
|| || || || || ||||| | |||| || | |||||||||| ||| |||||||| |
Sbjct 438 TTAGGAACCCTGAGCAGACTGTCAGTGATAAGCTAGAGGAAGGTGAGGATGACGTCAAGT 379
Query 311 CATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGC 370
||| |||||||||||| ||||| |||||||||||||||||| | | |||||||| |
Sbjct 378 CATTATGCCCCTTATGCACTGGGCGACACACGTGCTACAATGGCCGAGACAAAGGGTCGT 319
Query 371 GAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAA 430
|| ||| ||| || || ||| ||| || ||||||||||||||||| ||| ||
Sbjct 318 GATCCCGTAAGGGTGAGGTAACTCCAAAAACCCGTCCTCAGTTCGGATTGTAGACTGTAA 259
Query 431 CTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATAC 489
|||| || || |||||||||||||||||||||| |||||| ||| | |||||||| |
Sbjct 258 CTCGCCTGCATAAAGCTGGAATCGCTAGTAATCGCCGATCAGCCATACGGCGGTGAATTC 199
Query 490 GTTCCCG 496
||||||
Sbjct 198 ATTCCCG 192
>seq170001
Length=313
Score = 178 bits (196), Expect = 4e-42
Identities = 168/213 (79%), Gaps = 1/213 (0%)
Strand=Plus/Plus
Query 285 GGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTG 344
||||||||| ||||| || |||| || || |||||| | ||||||||| ||| |
Sbjct 66 GGAGGAAGGAGGGGATGATGTCAGGTCTGTATTACCCTTACGTCCTGGGCTACAAACGCG 125
Query 345 CTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCAT-AAAGTT 403
||||||||| || ||||| | ||||| || ||||||||| |||||||| ||| ||| |
Sbjct 126 CTACAATGGCCAGTACAATGCGCAGCAAAGCCGCGAGGTGGAGCAAATCGCATCAAAACT 185
Query 404 GTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATC 463
| || |||||||||||| || ||| |||||| || |||||| ||||||||||||||||
Sbjct 186 GGTCCCAGTTCGGATTGCAGGCTGAAACTCGCCTGCATGAAGTCGGAATCGCTAGTAATC 245
Query 464 GTAGATCAGCATGCTACGGTGAATACGTTCCCG 496
| | |||||| | |||||||||||||||||
Sbjct 246 GCAAGTCAGCACATTGCGGTGAATACGTTCCCG 278
>seq229289
Length=301
Score = 143 bits (158), Expect = 8e-32
Identities = 223/311 (72%), Gaps = 22/311 (7%)
Strand=Plus/Minus
Query 45 ACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104
|||||||||||||||||||||||||||||| | | |||| ||||||||||| ||||
Sbjct 301 ACAAGCGGTGGAGCATGTGGTTTAATTCGACGATAAGCGAGGAACCTTACCAGGGTTTGA 242
Query 105 CATCCT-CTGACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGA 163
||| ||| | | | | | || | |||||| ||| | |||||||
Sbjct 241 CATGTAGCTGCAAGCGCACGGAA---ACGTGTGACCTTCGAGGGTGCTAC--ACAGGTGC 187
Query 164 TGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAA 223
|||| |||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 186 TGCACGGTTGTCGTCAGCTCGTGTCGTGAGATGTTCCCTTAAGTGGGAGAACGAGCGCAA 127
Query 224 CCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTG-ACAAA 282
||| | | | |||| ||| || || | | | ||||||| | | ||
Sbjct 126 CCCCCATGATATGTTG-----ATT---TT---CA-TATCA---GACTGCCAGCGTTTAAG 82
Query 283 CCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACG 342
||||||||| ||||| |||||||| ||| | || |||||| | |||||||||||||
Sbjct 81 TTGGAGGAAGGCGGGGATGACGTCAAGTCAGCGTGGCCCTTACGCCCTGGGCTACACACG 22
Query 343 TGCTACAATGG 353
|||||||||||
Sbjct 21 TGCTACAATGG 11
>seq11807
Length=1561
Score = 131 bits (144), Expect = 5e-28
Identities = 177/247 (72%), Gaps = 0/247 (0%)
Strand=Plus/Plus
Query 217 AGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGT 276
||||||||||| || |||||||| | | |||| | || || | | |||||||
Sbjct 1048 AGCGCAACCCTCGTACTGAGTTGCCACCTTCGAGTTTGAAACCCTGAACATATTGCCGGT 1107
Query 277 GACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTA 336
| || || | |||| || ||| ||||| || |||||||||||||||| | ||| |
Sbjct 1108 CATAAGTCGAACGAAGATGAGGAGGACGTTAAGTCATCATGCCCCTTATACCCTAGGCGA 1167
Query 337 CACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCA 396
||||||||||||| ||| | |||||||| || | || ||| ||| || |||
Sbjct 1168 CACACGTGCTACAGTGGCCGGGACAAAGGGTTATGATCCTGCAAGGGTGAGCTAACTCCA 1227
Query 397 TAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCT 456
|| |||||||||| |||||||| || |||||| |||||| ||| ||||| |||
Sbjct 1228 AGAACCCGTTCTCAGTTTAGATTGTAGGCTACAACTCACCTATATAAAGTCGGAATGGCT 1287
Query 457 AGTAATC 463
|||||||
Sbjct 1288 AGTAATC 1294
>seq231621
Length=361
Score = 111 bits (122), Expect = 5e-22
Identities = 80/91 (88%), Gaps = 1/91 (1%)
Strand=Plus/Plus
Query 407 CTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTA 466
|||||||| ||||| | |||||||||| | |||||||||||||||||||||||||||
Sbjct 31 CTCAGTTCAGATTGAGGGCTGCAACTCGCCCTCATGAAGCTGGAATCGCTAGTAATCGTA 90
Query 467 GATCAGCAT-GCTACGGTGAATACGTTCCCG 496
||||||| | |||||||||||||||||| ||
Sbjct 91 GATCAGCCTCGCTACGGTGAATACGTTCTCG 121
>seq218629
Length=1211
Score = 95.1 bits (104), Expect = 4e-17
Identities = 148/213 (69%), Gaps = 9/213 (4%)
Strand=Plus/Plus
Query 218 GCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTG 277
|||||||||||| ||||||||||| | | |||| || || |||| || ||||||||
Sbjct 1008 GCGCAACCCTTATACTTAGTTGCCACCTTCGAGTTTGGAACCCTAAACAGATTGCCGGTG 1067
Query 278 ACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTAC 337
| || ||| |||||| || ||| || | || ||||||| ||| ||||| ||
Sbjct 1068 ATAAGCCGAAGGAAGATGAGGATGATGCTAAGTCATCATACCC---------TGGGCGAC 1118
Query 338 ACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCAT 397
||| |||||||| || | |||||||| || | | ||| ||| || |||
Sbjct 1119 ACATGTGCTACAGTGCCCGGGACAAAGGGTTATGATCCTGTAAGGGTGAGCTAACTCCAA 1178
Query 398 AAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAA 430
|| |||||||||| |||||||| || |||
Sbjct 1179 GAACCCGTTCTCAGTTTAGATTGTAGGCTACAA 1211
>seq226990
Length=218
Score = 93.3 bits (102), Expect = 1e-16
Identities = 76/91 (84%), Gaps = 1/91 (1%)
Strand=Plus/Minus
Query 407 CTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTA 466
|||||||||||||| || |||||||||| || |||||||| ||||| |||||||||||
Sbjct 218 CTCAGTTCGGATTGCAGGCTGCAACTCGCCTGTATGAAGCCAGAATCACTAGTAATCGTC 159
Query 467 GATCAG-CATGCTACGGTGAATACGTTCCCG 496
| |||| ||| | || ||||| ||||||||
Sbjct 158 GGTCAGCCATACGGCGATGAATTCGTTCCCG 128
>seq111570
Length=11620
Score = 93.3 bits (102), Expect = 1e-16
Identities = 77/93 (83%), Gaps = 1/93 (1%)
Strand=Plus/Plus
Query 15 TGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGA 74
||||||| ||||||||||||| || ||||||||| ||||||||||||||||||||||||
Sbjct 459 TGAAACTAAAAGGAATTGACGAGGGCCCGCACAAATGGTGGAGCATGTGGTTTAATTCGA 518
Query 75 AGCAACGCGAAGAACCTTACCAAATCTTGACAT 107
| | |||||| |||| | || |||| |||
Sbjct 519 TACGTGGTGAAGAATCTTATC-AAGCTTGGCAT 550
>seq218653
Length=638
Score = 89.7 bits (98), Expect = 2e-15
Identities = 81/101 (80%), Gaps = 1/101 (1%)
Strand=Plus/Minus
Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66
|||||| ||||||| ||||||||||||| | |||||||||| ||||||||||||||||
Sbjct 178 CGCAAGAATGAAACTAAAAGGAATTGACGAGCCCCCGCACAAGTGGTGGAGCATGTGGTT 119
Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107
|||||| | | | ||| || |||| | || |||| |||
Sbjct 118 TAATTCTATTCGTGGTGAATAATCTTATC-AAGCTTGGCAT 79
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1500413140480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |