Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq163170 480 2e-133 seq198914 233 6e-59 seq16346 223 1e-55 seq212791 197 4e-48 seq189298 190 6e-46 seq170001 178 4e-42 seq229289 143 8e-32 seq11807 131 5e-28 seq231621 111 5e-22 seq218629 95.1 4e-17 seq226990 93.3 1e-16 seq111570 93.3 1e-16 seq218653 89.7 2e-15 >seq163170 Length=29127 Score = 480 bits (532), Expect = 2e-133 Identities = 407/497 (82%), Gaps = 3/497 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 27334 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 27275 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 27274 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 27215 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | || |||||| || | ||||||| ||||||| ||||||||| Sbjct 27214 TTGAAAGAGAGGGGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 27157 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 27156 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGCTTAGTTGC 27097 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || | | |||| || || || || |||||||||||| || ||||||||||||| ||| Sbjct 27096 CACCGTCGAGTTTGGAACCCTGAGCAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 27037 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| ||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 27036 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 26977 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| |||||||| ||| || ||| ||| || |||||||||||||| Sbjct 26976 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 26917 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 || |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | Sbjct 26916 CAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 26857 Query 480 CGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 26856 CGGTGAATTCGTTCCCG 26840 >seq198914 Length=2821 Score = 233 bits (258), Expect = 6e-59 Identities = 177/206 (86%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 293 GTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATG 352 |||||||||||||||| |||||||| |||||||| |||||||||||||||||||||| Sbjct 2821 GTGGGGACGACGTCAAGTCATCATGGCCCTTATGTCCAGGGCTACACACGTGCTACAATG 2762 Query 353 GACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCAT-AAAGTTGTTCTCAG 411 | | |||||||||| || |||||| |||| ||| |||||||| ||||| |||||| Sbjct 2761 GCCGATACAAAGGGTTGCAAAACCGTGAGGCGGAGCCAATCCCATCAAAGTCAGTCTCAG 2702 Query 412 TTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCA 471 |||||||||||| |||||||||| || |||||| ||||||||||||||||||| ||||| Sbjct 2701 TTCGGATTGTAGGCTGCAACTCGCCTGCATGAAGTTGGAATCGCTAGTAATCGTGGATCA 2642 Query 472 GC-ATGCTACGGTGAATACGTTCCCG 496 || | || |||||||||||||||||| Sbjct 2641 GCAACGCCACGGTGAATACGTTCCCG 2616 >seq16346 Length=2555 Score = 223 bits (246), Expect = 1e-55 Identities = 324/452 (72%), Gaps = 7/452 (2%) Strand=Plus/Minus Query 15 TGAAACTCAAAGG-AATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCG 73 ||||||||||| | ||||||| ||| || ||| |||||||||||||| | ||||||||| Sbjct 1172 TGAAACTCAAAAGCAATTGACAGGGGCCTGCATAAGCGGTGGAGCATCTAGTTTAATTCA 1113 Query 74 AAGCAACGCGAAGAACCTTACCAAATCTTGACAT-CCTCTGACCCCTCTAGAGATAGAGG 132 | |||| | ||||||||| | |||||||| || || || || || | ||| Sbjct 1112 ATGCAAAGTGAAGAACCTACCTGGGGCTTGACATGCCGGGGAATCCCCTTGAAGGACAGG 1053 Query 133 TTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGA 192 | || | || || | | ||||| |||||| | |||||| ||| || | | | Sbjct 1052 AGTGCCTTAAGGA--ACGCGGGAATAGGTGGTGCATGTCTATCGTCAACTC-TGCCATAA 996 Query 193 GATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTT 252 | |||||| ||||| |||||| | |||||||| |||||| ||||| | | || || Sbjct 995 GGTGTTGGATTAAGGTTCGCAACAATTGCAACCCTCGTGCTTAGCTGCCACCTTCAAATT 936 Query 253 GGGCACTCTAAGTTGACTGCCGGTGACAAA--CCGGAGGAAGGTGGGGACGACGTCAAAT 310 || || || || | || | |||| | | ||| || |||||| || || ||||| | Sbjct 935 TGGAACCCTGAGCAGGCTATCAGTGATATAAGCCGAAGAAAGGTGATGATGATGTCAAGT 876 Query 311 CATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGC 370 |||| ||||||||||| |||||| ||||||||| |||||||| || ||||||| | Sbjct 875 CATCGTGCCCCTTATGCCTTGGGCAACACACGTGTTACAATGGCCAGGCCAAAGGGTCGA 816 Query 371 GAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAA 430 || ||| ||| ||| || ||| || | ||||| | ||||||||| | |||||| Sbjct 815 GATCTCGCAAGGGTGAGCTAACTCCAAGAATTCGTTCTTAATTCGGATTGAAAGCTGCAA 756 Query 431 CTCGACTATATGAAGCTGGAATCGCTAGTAAT 462 |||| | | ||||||||||||||||||||| Sbjct 755 CTCGCTTGCACGAAGCTGGAATCGCTAGTAAT 724 >seq212791 Length=233936 Score = 197 bits (218), Expect = 4e-48 Identities = 186/236 (79%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 166266 GACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 166325 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| |||||||||||||||||| | ||||| ||| ||| | | | ||| | Sbjct 166326 GGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGA 166385 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446 || ||| || |||| | ||||||||||||||| ||||||||||| | |||||| Sbjct 166386 GCGAAT-CCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGT 166444 Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 |||||||||||||||||| ||||||||||| ||||||||| || |||| |||| Sbjct 166445 TGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 166500 Score = 163 bits (180), Expect = 9e-38 Identities = 177/234 (76%), Gaps = 17/234 (7%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct 165631 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 165690 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||| | |||||||||| ||||||| | ||| Sbjct 165691 GTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACA---TATGA------ 165741 Query 121 TAGAGATAGAGGTTTCCCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTG 173 | | | | | ||| ||| || || | | ||||||| ||||||| || Sbjct 165742 -ACAACAAAACCTGTCCTTAACGGGATGGTACTTACTTTCATACAGGTGCTGCATGGCTG 165800 Query 174 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||||||||||||||||||||||||| ||| |||||| |||||||| |||||| Sbjct 165801 TCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCT 165854 >seq189298 Length=944 Score = 190 bits (210), Expect = 6e-46 Identities = 191/247 (77%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 251 TTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAAT 310 || || || || || ||||| | |||| || | |||||||||| ||| |||||||| | Sbjct 438 TTAGGAACCCTGAGCAGACTGTCAGTGATAAGCTAGAGGAAGGTGAGGATGACGTCAAGT 379 Query 311 CATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGC 370 ||| |||||||||||| ||||| |||||||||||||||||| | | |||||||| | Sbjct 378 CATTATGCCCCTTATGCACTGGGCGACACACGTGCTACAATGGCCGAGACAAAGGGTCGT 319 Query 371 GAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAA 430 || ||| ||| || || ||| ||| || ||||||||||||||||| ||| || Sbjct 318 GATCCCGTAAGGGTGAGGTAACTCCAAAAACCCGTCCTCAGTTCGGATTGTAGACTGTAA 259 Query 431 CTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATAC 489 |||| || || |||||||||||||||||||||| |||||| ||| | |||||||| | Sbjct 258 CTCGCCTGCATAAAGCTGGAATCGCTAGTAATCGCCGATCAGCCATACGGCGGTGAATTC 199 Query 490 GTTCCCG 496 |||||| Sbjct 198 ATTCCCG 192 >seq170001 Length=313 Score = 178 bits (196), Expect = 4e-42 Identities = 168/213 (79%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 285 GGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTG 344 ||||||||| ||||| || |||| || || |||||| | ||||||||| ||| | Sbjct 66 GGAGGAAGGAGGGGATGATGTCAGGTCTGTATTACCCTTACGTCCTGGGCTACAAACGCG 125 Query 345 CTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCAT-AAAGTT 403 ||||||||| || ||||| | ||||| || ||||||||| |||||||| ||| ||| | Sbjct 126 CTACAATGGCCAGTACAATGCGCAGCAAAGCCGCGAGGTGGAGCAAATCGCATCAAAACT 185 Query 404 GTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATC 463 | || |||||||||||| || ||| |||||| || |||||| |||||||||||||||| Sbjct 186 GGTCCCAGTTCGGATTGCAGGCTGAAACTCGCCTGCATGAAGTCGGAATCGCTAGTAATC 245 Query 464 GTAGATCAGCATGCTACGGTGAATACGTTCCCG 496 | | |||||| | ||||||||||||||||| Sbjct 246 GCAAGTCAGCACATTGCGGTGAATACGTTCCCG 278 >seq229289 Length=301 Score = 143 bits (158), Expect = 8e-32 Identities = 223/311 (72%), Gaps = 22/311 (7%) Strand=Plus/Minus Query 45 ACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 |||||||||||||||||||||||||||||| | | |||| ||||||||||| |||| Sbjct 301 ACAAGCGGTGGAGCATGTGGTTTAATTCGACGATAAGCGAGGAACCTTACCAGGGTTTGA 242 Query 105 CATCCT-CTGACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGA 163 ||| ||| | | | | | || | |||||| ||| | ||||||| Sbjct 241 CATGTAGCTGCAAGCGCACGGAA---ACGTGTGACCTTCGAGGGTGCTAC--ACAGGTGC 187 Query 164 TGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAA 223 |||| |||||||||||||||||||||||||||||| |||||| ||||||||||| Sbjct 186 TGCACGGTTGTCGTCAGCTCGTGTCGTGAGATGTTCCCTTAAGTGGGAGAACGAGCGCAA 127 Query 224 CCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTG-ACAAA 282 ||| | | | |||| ||| || || | | | ||||||| | | || Sbjct 126 CCCCCATGATATGTTG-----ATT---TT---CA-TATCA---GACTGCCAGCGTTTAAG 82 Query 283 CCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACG 342 ||||||||| ||||| |||||||| ||| | || |||||| | ||||||||||||| Sbjct 81 TTGGAGGAAGGCGGGGATGACGTCAAGTCAGCGTGGCCCTTACGCCCTGGGCTACACACG 22 Query 343 TGCTACAATGG 353 ||||||||||| Sbjct 21 TGCTACAATGG 11 >seq11807 Length=1561 Score = 131 bits (144), Expect = 5e-28 Identities = 177/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 217 AGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGT 276 ||||||||||| || |||||||| | | |||| | || || | | ||||||| Sbjct 1048 AGCGCAACCCTCGTACTGAGTTGCCACCTTCGAGTTTGAAACCCTGAACATATTGCCGGT 1107 Query 277 GACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTA 336 | || || | |||| || ||| ||||| || |||||||||||||||| | ||| | Sbjct 1108 CATAAGTCGAACGAAGATGAGGAGGACGTTAAGTCATCATGCCCCTTATACCCTAGGCGA 1167 Query 337 CACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCA 396 ||||||||||||| ||| | |||||||| || | || ||| ||| || ||| Sbjct 1168 CACACGTGCTACAGTGGCCGGGACAAAGGGTTATGATCCTGCAAGGGTGAGCTAACTCCA 1227 Query 397 TAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCT 456 || |||||||||| |||||||| || |||||| |||||| ||| ||||| ||| Sbjct 1228 AGAACCCGTTCTCAGTTTAGATTGTAGGCTACAACTCACCTATATAAAGTCGGAATGGCT 1287 Query 457 AGTAATC 463 ||||||| Sbjct 1288 AGTAATC 1294 >seq231621 Length=361 Score = 111 bits (122), Expect = 5e-22 Identities = 80/91 (88%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 407 CTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTA 466 |||||||| ||||| | |||||||||| | ||||||||||||||||||||||||||| Sbjct 31 CTCAGTTCAGATTGAGGGCTGCAACTCGCCCTCATGAAGCTGGAATCGCTAGTAATCGTA 90 Query 467 GATCAGCAT-GCTACGGTGAATACGTTCCCG 496 ||||||| | |||||||||||||||||| || Sbjct 91 GATCAGCCTCGCTACGGTGAATACGTTCTCG 121 >seq218629 Length=1211 Score = 95.1 bits (104), Expect = 4e-17 Identities = 148/213 (69%), Gaps = 9/213 (4%) Strand=Plus/Plus Query 218 GCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTG 277 |||||||||||| ||||||||||| | | |||| || || |||| || |||||||| Sbjct 1008 GCGCAACCCTTATACTTAGTTGCCACCTTCGAGTTTGGAACCCTAAACAGATTGCCGGTG 1067 Query 278 ACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTAC 337 | || ||| |||||| || ||| || | || ||||||| ||| ||||| || Sbjct 1068 ATAAGCCGAAGGAAGATGAGGATGATGCTAAGTCATCATACCC---------TGGGCGAC 1118 Query 338 ACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCAT 397 ||| |||||||| || | |||||||| || | | ||| ||| || ||| Sbjct 1119 ACATGTGCTACAGTGCCCGGGACAAAGGGTTATGATCCTGTAAGGGTGAGCTAACTCCAA 1178 Query 398 AAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAA 430 || |||||||||| |||||||| || ||| Sbjct 1179 GAACCCGTTCTCAGTTTAGATTGTAGGCTACAA 1211 >seq226990 Length=218 Score = 93.3 bits (102), Expect = 1e-16 Identities = 76/91 (84%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 407 CTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTA 466 |||||||||||||| || |||||||||| || |||||||| ||||| ||||||||||| Sbjct 218 CTCAGTTCGGATTGCAGGCTGCAACTCGCCTGTATGAAGCCAGAATCACTAGTAATCGTC 159 Query 467 GATCAG-CATGCTACGGTGAATACGTTCCCG 496 | |||| ||| | || ||||| |||||||| Sbjct 158 GGTCAGCCATACGGCGATGAATTCGTTCCCG 128 >seq111570 Length=11620 Score = 93.3 bits (102), Expect = 1e-16 Identities = 77/93 (83%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 15 TGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGA 74 ||||||| ||||||||||||| || ||||||||| |||||||||||||||||||||||| Sbjct 459 TGAAACTAAAAGGAATTGACGAGGGCCCGCACAAATGGTGGAGCATGTGGTTTAATTCGA 518 Query 75 AGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 | | |||||| |||| | || |||| ||| Sbjct 519 TACGTGGTGAAGAATCTTATC-AAGCTTGGCAT 550 >seq218653 Length=638 Score = 89.7 bits (98), Expect = 2e-15 Identities = 81/101 (80%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| ||||||| ||||||||||||| | |||||||||| |||||||||||||||| Sbjct 178 CGCAAGAATGAAACTAAAAGGAATTGACGAGCCCCCGCACAAGTGGTGGAGCATGTGGTT 119 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 |||||| | | | ||| || |||| | || |||| ||| Sbjct 118 TAATTCTATTCGTGGTGAATAATCTTATC-AAGCTTGGCAT 79 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1500413140480