Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq203717 232 1e-58 seq162856 214 4e-53 seq174641 206 5e-51 seq205930 188 1e-45 seq163170 183 6e-44 seq212791 107 4e-21 >seq203717 Length=542 Score = 232 bits (256), Expect = 1e-58 Identities = 181/216 (84%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 218 CGGGACATTGCCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 159 Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229 ||||||||| | ||||||| || |||||| || || |||||||||||| ||||| Sbjct 158 CGCCCAAAGGTTCCCTCAGGCTGTTTGGAAATCAGCCGTCGAGTGCAAAGGCAGAAGGGA 99 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | || ||||||| ||| |||||| |||||| |||||| || |||| |||||||| || Sbjct 98 GCTTAACTGCGAGACCTACAAGTCGAGCAGGTGCGAAAGCAGGCCTTAGTGATCCGGTGG 39 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAG 325 | ||| |||||| |||| |||||| ||||||||||| Sbjct 38 TTCTGTATGGAAGGGCCATCGCTCAACGGATAAAAG 3 >seq162856 Length=764 Score = 214 bits (236), Expect = 4e-53 Identities = 228/297 (77%), Gaps = 3/297 (1%) Strand=Plus/Minus Query 44 GGAGCCGCTGTTGGGATACTACCCCTGTTGTAT-TGGATTTCTAACCGGACGACGTATAA 102 |||||| | || ||||| |||| | | | | |||| | |||||| || ||| | Sbjct 369 GGAGCCAACGGTGAGATACCACCCTTCGTTTGTCTGGACT-CTAACCTACCGCCGTC-AT 312 Query 103 CCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTA 162 ||| || |||||| | |||| |||| |||||||||||||||||||||||||||| ||| Sbjct 311 CCGGTGGAGGGACACTATCAGGCGGGTAGTTTGACTGGGGCGGTCGCCTCCCAAAATGTA 252 Query 163 ACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCA 222 |||||||||| | ||| | ||||| || |||||| || || | |||| ||| ||| Sbjct 251 ACGGAGGCGCTCGAAGGTTGGCTCAGGCTGTTTGGAAATCAGCCGTAGAGTGTAAACGCA 192 Query 223 AAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGAT 282 ||| | ||||||| || || |||||| |||||| |||||||| || |||| |||| Sbjct 191 TAAGCCAGCTTGACTGTGAGACAAACAAGTCGAGCAGGTACGAAAGTAGGACTTAGTGAT 132 Query 283 CCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||||| ||| |||||| ||||||||||| ||||||||||| ||| | ||||||| Sbjct 131 CCGGCGGTTCTGTATGGAAGGGCCGTCGCTCAACGGATAAAAGGTACGCCGGGGATA 75 >seq174641 Length=359 Score = 206 bits (228), Expect = 5e-51 Identities = 168/204 (82%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 136 ACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGAT 195 |||||||||||||||||| ||| ||||||||||||| ||||| | | ||||| || | Sbjct 359 ACTGGGGCGGTCGCCTCCTAAACAGTAACGGAGGCGTACAAAGGTCCACTCAGGCTGATT 300 Query 196 GGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTA 255 |||||||| || | |||||||||||| ||| | | ||||||| || ||| |||||| | Sbjct 299 GGAAACCAGCCGTAGAGTGCAAAGGCATAAGTGGGCTTGACTGTGAGACCTACAAGTCGA 240 Query 256 GCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGA 315 ||||||||||||||||| |||| |||||||| ||| | | |||||| |||| |||||| | Sbjct 239 GCAGGGACGAAAGTCGGTCTTAGTGATCCGGTGGTTCCGCATGGAAGGGCCATCGCTCAA 180 Query 316 CGGATAAAAGCTACCCTGGGGATA 339 |||||||||| ||| | ||||||| Sbjct 179 CGGATAAAAGGTACGCCGGGGATA 156 >seq205930 Length=511 Score = 188 bits (208), Expect = 1e-45 Identities = 196/257 (76%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 83 TCTAACCGGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGG 142 |||||||| | ||| ||||| | |||||| || | |||| ||||||||||||| Sbjct 328 TCTAACCGCGCTCCGTGAAACCGGGGTCGGGACCCTGCATGGCGGGTAGTTTGACTGGGG 269 Query 143 CGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACC 202 |||||||||||||||||||||||||||||| | | | | ||||| ||| ||||| | Sbjct 268 CGGTCGCCTCCCAAAGAGTAACGGAGGCGCGCGATGGTGGGCTCAGGCTGGTCGGAAATC 209 Query 203 ATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGA 262 | | ||||||| |||| ||| | ||||||||| || |||||| ||||| || Sbjct 208 AGCTGTTGAGTGCAATGGCATAAGCCCGCCTGACTGCGAGACTGACAAGTCGAGCAGAGA 149 Query 263 CGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAA 322 |||||||||| | || |||||||| ||| | | ||||| |||| |||||| |||||||| Sbjct 148 CGAAAGTCGGTCATAGTGATCCGGTGGTTCCGCGTGGAAGGGCCATCGCTCAACGGATAA 89 Query 323 AAGCTACCCTGGGGATA 339 ||| ||| | ||||||| Sbjct 88 AAGGTACGCCGGGGATA 72 >seq163170 Length=29127 Score = 183 bits (202), Expect = 6e-44 Identities = 180/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 22017 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 21958 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 21957 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 21899 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 21898 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 21839 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 21838 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 21789 >seq212791 Length=233936 Score = 107 bits (118), Expect = 4e-21 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 197147 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 197206 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 | | ||| || |||| ||| ||| | || || | || || | ||| Sbjct 197207 TGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 197261 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 197262 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 197321 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 197322 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 197372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980057093888