Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq203717 232 1e-58
seq162856 214 4e-53
seq174641 206 5e-51
seq205930 188 1e-45
seq163170 183 6e-44
seq212791 107 4e-21
>seq203717
Length=542
Score = 232 bits (256), Expect = 1e-58
Identities = 181/216 (84%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 CGGGACATTGCCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 159
Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229
||||||||| | ||||||| || |||||| || || |||||||||||| |||||
Sbjct 158 CGCCCAAAGGTTCCCTCAGGCTGTTTGGAAATCAGCCGTCGAGTGCAAAGGCAGAAGGGA 99
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| || ||||||| ||| |||||| |||||| |||||| || |||| |||||||| ||
Sbjct 98 GCTTAACTGCGAGACCTACAAGTCGAGCAGGTGCGAAAGCAGGCCTTAGTGATCCGGTGG 39
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAG 325
| ||| |||||| |||| |||||| |||||||||||
Sbjct 38 TTCTGTATGGAAGGGCCATCGCTCAACGGATAAAAG 3
>seq162856
Length=764
Score = 214 bits (236), Expect = 4e-53
Identities = 228/297 (77%), Gaps = 3/297 (1%)
Strand=Plus/Minus
Query 44 GGAGCCGCTGTTGGGATACTACCCCTGTTGTAT-TGGATTTCTAACCGGACGACGTATAA 102
|||||| | || ||||| |||| | | | | |||| | |||||| || ||| |
Sbjct 369 GGAGCCAACGGTGAGATACCACCCTTCGTTTGTCTGGACT-CTAACCTACCGCCGTC-AT 312
Query 103 CCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTA 162
||| || |||||| | |||| |||| |||||||||||||||||||||||||||| |||
Sbjct 311 CCGGTGGAGGGACACTATCAGGCGGGTAGTTTGACTGGGGCGGTCGCCTCCCAAAATGTA 252
Query 163 ACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCA 222
|||||||||| | ||| | ||||| || |||||| || || | |||| ||| |||
Sbjct 251 ACGGAGGCGCTCGAAGGTTGGCTCAGGCTGTTTGGAAATCAGCCGTAGAGTGTAAACGCA 192
Query 223 AAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGAT 282
||| | ||||||| || || |||||| |||||| |||||||| || |||| ||||
Sbjct 191 TAAGCCAGCTTGACTGTGAGACAAACAAGTCGAGCAGGTACGAAAGTAGGACTTAGTGAT 132
Query 283 CCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|||||||| ||| |||||| ||||||||||| ||||||||||| ||| | |||||||
Sbjct 131 CCGGCGGTTCTGTATGGAAGGGCCGTCGCTCAACGGATAAAAGGTACGCCGGGGATA 75
>seq174641
Length=359
Score = 206 bits (228), Expect = 5e-51
Identities = 168/204 (82%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 136 ACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGAT 195
|||||||||||||||||| ||| ||||||||||||| ||||| | | ||||| || |
Sbjct 359 ACTGGGGCGGTCGCCTCCTAAACAGTAACGGAGGCGTACAAAGGTCCACTCAGGCTGATT 300
Query 196 GGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTA 255
|||||||| || | |||||||||||| ||| | | ||||||| || ||| |||||| |
Sbjct 299 GGAAACCAGCCGTAGAGTGCAAAGGCATAAGTGGGCTTGACTGTGAGACCTACAAGTCGA 240
Query 256 GCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGA 315
||||||||||||||||| |||| |||||||| ||| | | |||||| |||| |||||| |
Sbjct 239 GCAGGGACGAAAGTCGGTCTTAGTGATCCGGTGGTTCCGCATGGAAGGGCCATCGCTCAA 180
Query 316 CGGATAAAAGCTACCCTGGGGATA 339
|||||||||| ||| | |||||||
Sbjct 179 CGGATAAAAGGTACGCCGGGGATA 156
>seq205930
Length=511
Score = 188 bits (208), Expect = 1e-45
Identities = 196/257 (76%), Gaps = 0/257 (0%)
Strand=Plus/Minus
Query 83 TCTAACCGGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGG 142
|||||||| | ||| ||||| | |||||| || | |||| |||||||||||||
Sbjct 328 TCTAACCGCGCTCCGTGAAACCGGGGTCGGGACCCTGCATGGCGGGTAGTTTGACTGGGG 269
Query 143 CGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACC 202
|||||||||||||||||||||||||||||| | | | | ||||| ||| ||||| |
Sbjct 268 CGGTCGCCTCCCAAAGAGTAACGGAGGCGCGCGATGGTGGGCTCAGGCTGGTCGGAAATC 209
Query 203 ATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGA 262
| | ||||||| |||| ||| | ||||||||| || |||||| ||||| ||
Sbjct 208 AGCTGTTGAGTGCAATGGCATAAGCCCGCCTGACTGCGAGACTGACAAGTCGAGCAGAGA 149
Query 263 CGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAA 322
|||||||||| | || |||||||| ||| | | ||||| |||| |||||| ||||||||
Sbjct 148 CGAAAGTCGGTCATAGTGATCCGGTGGTTCCGCGTGGAAGGGCCATCGCTCAACGGATAA 89
Query 323 AAGCTACCCTGGGGATA 339
||| ||| | |||||||
Sbjct 88 AAGGTACGCCGGGGATA 72
>seq163170
Length=29127
Score = 183 bits (202), Expect = 6e-44
Identities = 180/230 (78%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||||||||||
Sbjct 22017 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 21958
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
| ||||| | |||| | ||| ||| | || | | |||||||||||| |||||
Sbjct 21957 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 21899
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| |||
Sbjct 21898 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 21839
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| || ||||| ||||||||||| ||||||||||| ||| || ||||||
Sbjct 21838 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 21789
>seq212791
Length=233936
Score = 107 bits (118), Expect = 4e-21
Identities = 163/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
||||||| || || ||| ||||| ||||||||| |||||| |||||||||||||||
Sbjct 197147 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 197206
Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228
| | ||| || |||| ||| ||| | || || | || || | |||
Sbjct 197207 TGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 197261
Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288
|| |||||| || ||| | ||| | ||| |||||||||||| | || ||||||||
Sbjct 197262 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 197321
Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|| | | ||||| ||| |||||| |||||| |||| ||| | |||||||
Sbjct 197322 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 197372
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 980057093888
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |