Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq208242 143 3e-32 seq203717 131 2e-28 seq224050 129 6e-28 seq212791 107 2e-21 seq163170 107 2e-21 seq174642 80.6 3e-13 seq162856 80.6 3e-13 >seq208242 Length=245 Score = 143 bits (158), Expect = 3e-32 Identities = 120/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||||| ||||||| |||| ||||||||| || |||||||| ||| Sbjct 171 CGGGGTCTTTCCGTCCCGCAGCGGGTACCCGGCGTCTTCACCGGAACCACAATTTCGCTG 112 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 ||| || ||||||| ||| |||||| ||||||||||||||||||| Sbjct 111 AGCATTTGGCCGAGACAGCGGGGCAGTCGTTACGCCATTCATGCAGGTCGGAACTTACCC 52 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 51 GACAAGGAATTTCGCTACCTTAGGACCGTTA 21 >seq203717 Length=542 Score = 131 bits (144), Expect = 2e-28 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | ||||||| |||||||||||| ||||| ||| ||||| Sbjct 374 GGGTCTTTCCGTCTAGTTGCGGGTAGCTGGCATCTTCACCAGCGCTACAGATTCGCTGAG 433 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | | || ||||||| ||| |||||||||||||||||||||||||||| Sbjct 434 CCCCTCGTGGAGACAGCGCCCAAATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGA 493 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||| Sbjct 494 CAAGGAATTTCGCTACCTTAGGACCGTTA 522 >seq224050 Length=624 Score = 129 bits (142), Expect = 6e-28 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 |||||||||||||| || ||||| |||||||||||||| || | | |||||| || Sbjct 64 GGGGTCTTTTCGTCTAGCTGCAGGTAACCGGCATCTTCACCGGTATTGTATTTTCACCGA 123 Query 84 GCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 ||| | ||||||| |||||||||||||| ||| ||||||||||| Sbjct 124 GCTAGTCCTCGAGACAGTTCCCCAGTCGTTACACCATTCGTGCGCGTCAGAACTTACCCG 183 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 184 ACAAGGAATTTCGCTACCTTAGGACCGTTA 213 >seq212791 Length=233936 Score = 107 bits (118), Expect = 2e-21 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 197003 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 196944 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 196943 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 196884 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 196883 GACAAGGAATTTCGCTACCTTAGGACAGTTA 196853 >seq163170 Length=29127 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 22177 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 22236 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 22237 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 22295 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 22296 ACAAGGAATTTCGCTACCTTAGGACCGTTA 22325 >seq174642 Length=258 Score = 80.6 bits (88), Expect = 3e-13 Identities = 82/111 (74%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | ||||||| |||||||||||||| | | ||||||| ||| Sbjct 148 CGGGGTCTTTCCGTCTAGTTGCGGGTAGCCGGCATCTTCACCGGCATTTCAATTTCGCTG 207 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGG 133 || | ||||||||||| ||| ||||||||||||||||| Sbjct 208 AGTCCGTGGTTGAGACAGTGGGGAAGTCGTTACGCCATTCGTGCAGGTCGG 258 >seq162856 Length=764 Score = 80.6 bits (88), Expect = 3e-13 Identities = 85/116 (73%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| ||||| || |||||||||||||| |||||||| ||| ||| Sbjct 458 CGGGGTCTTTCCGTCTAGATGCGGGAAACCGGCATCTTCACCGGTACTACAAGTTCGCTG 517 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTT 138 || ||| |||||| ||| |||||||||||||||||||||| Sbjct 518 TGCCGCTCGTTAAGACAGCTCCCAGATCGTTACGCCATTCGTGCAGGTCGGAACTT 573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545935775112