Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= AAMG01001138.1
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
seq208242 143 3e-32
seq203717 131 2e-28
seq224050 129 6e-28
seq212791 107 2e-21
seq163170 107 2e-21
seq174642 80.6 3e-13
seq162856 80.6 3e-13
>seq208242
Length=245
Score = 143 bits (158), Expect = 3e-32
Identities = 120/151 (79%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
|||||||||| |||||| ||||||| |||| ||||||||| || |||||||| |||
Sbjct 171 CGGGGTCTTTCCGTCCCGCAGCGGGTACCCGGCGTCTTCACCGGAACCACAATTTCGCTG 112
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
||| || ||||||| ||| |||||| |||||||||||||||||||
Sbjct 111 AGCATTTGGCCGAGACAGCGGGGCAGTCGTTACGCCATTCATGCAGGTCGGAACTTACCC 52
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||||||||
Sbjct 51 GACAAGGAATTTCGCTACCTTAGGACCGTTA 21
>seq203717
Length=542
Score = 131 bits (144), Expect = 2e-28
Identities = 116/149 (78%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| | ||||||| |||||||||||| ||||| ||| |||||
Sbjct 374 GGGTCTTTCCGTCTAGTTGCGGGTAGCTGGCATCTTCACCAGCGCTACAGATTCGCTGAG 433
Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144
| | || ||||||| ||| ||||||||||||||||||||||||||||
Sbjct 434 CCCCTCGTGGAGACAGCGCCCAAATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGA 493
Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||||||
Sbjct 494 CAAGGAATTTCGCTACCTTAGGACCGTTA 522
>seq224050
Length=624
Score = 129 bits (142), Expect = 6e-28
Identities = 116/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83
|||||||||||||| || ||||| |||||||||||||| || | | |||||| ||
Sbjct 64 GGGGTCTTTTCGTCTAGCTGCAGGTAACCGGCATCTTCACCGGTATTGTATTTTCACCGA 123
Query 84 GCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
||| | ||||||| |||||||||||||| ||| |||||||||||
Sbjct 124 GCTAGTCCTCGAGACAGTTCCCCAGTCGTTACACCATTCGTGCGCGTCAGAACTTACCCG 183
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 184 ACAAGGAATTTCGCTACCTTAGGACCGTTA 213
>seq212791
Length=233936
Score = 107 bits (118), Expect = 2e-21
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
||||||||| |||| || |||| || |||||||||| || | | ||||||||| |
Sbjct 197003 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 196944
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
| || | ||||||| |||||||||||||||||||| ||||| |
Sbjct 196943 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 196884
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||| ||||
Sbjct 196883 GACAAGGAATTTCGCTACCTTAGGACAGTTA 196853
>seq163170
Length=29127
Score = 107 bits (118), Expect = 2e-21
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || |||||||||| || | | ||||||| |||
Sbjct 22177 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 22236
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 22237 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 22295
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 22296 ACAAGGAATTTCGCTACCTTAGGACCGTTA 22325
>seq174642
Length=258
Score = 80.6 bits (88), Expect = 3e-13
Identities = 82/111 (74%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
|||||||||| |||| | ||||||| |||||||||||||| | | ||||||| |||
Sbjct 148 CGGGGTCTTTCCGTCTAGTTGCGGGTAGCCGGCATCTTCACCGGCATTTCAATTTCGCTG 207
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGG 133
|| | ||||||||||| ||| |||||||||||||||||
Sbjct 208 AGTCCGTGGTTGAGACAGTGGGGAAGTCGTTACGCCATTCGTGCAGGTCGG 258
>seq162856
Length=764
Score = 80.6 bits (88), Expect = 3e-13
Identities = 85/116 (73%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
|||||||||| |||| ||||| || |||||||||||||| |||||||| ||| |||
Sbjct 458 CGGGGTCTTTCCGTCTAGATGCGGGAAACCGGCATCTTCACCGGTACTACAAGTTCGCTG 517
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTT 138
|| ||| |||||| ||| ||||||||||||||||||||||
Sbjct 518 TGCCGCTCGTTAAGACAGCTCCCAGATCGTTACGCCATTCGTGCAGGTCGGAACTT 573
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 545935775112
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |