Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq238195 405 1e-110
seq155949 313 5e-83
seq163170 226 6e-57
seq212791 206 6e-51
seq231426 176 1e-41
seq216306 143 6e-32
seq211067 105 1e-20
seq118994 100 6e-19
seq194638 91.5 3e-16
seq197069 80.6 6e-13
seq28663 77.0 7e-12
>seq238195
Length=484
Score = 405 bits (448), Expect = 1e-110
Identities = 293/336 (87%), Gaps = 2/336 (1%)
Strand=Plus/Minus
Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
|||||||| ||| || ||||||| ||| |||||||| | | |||||||||||||||||||
Sbjct 388 CTTTACAACCCGCAGGCCTTCTT-CACCCACGCGGCGTCG-CTGGATCAGGCTTTCGCCC 331
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 271
Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180
|||| ||| || |||||||||||||| ||||||||||||||||||| ||| ||||| |
Sbjct 270 TGTGGCTGGTCGTCCTCTCAGACCAGCTACGGATCGTCGCCTTGGTAGGCCGTTACCCTA 211
Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240
|||||||||||||||||| | |||||||||| |||||| ||||| ||||||| ||||
Sbjct 210 CCAACTAGCTAATCCGACTTGGGCTCATCTGTTAGCGCCAGGCCTTGCGGTCCCCGGCTT 151
Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300
|| |||||| |||||||||||||||| |||||| ||| |||||||||| |||
Sbjct 150 TCCACCGTAGTGCGTATGCGGTATTAGCCCGAGTTTCCCCGGGTTGTCCCCCACTAACAG 91
Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336
||||||||| | || |||||||||||||||||||||
Sbjct 90 GCAGATTCCCAAGCGTTACTCACCCGTCCGCCGCTC 55
>seq155949
Length=2432
Score = 313 bits (346), Expect = 5e-83
Identities = 257/313 (82%), Gaps = 16/313 (5%)
Strand=Plus/Plus
Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83
|||| |||||||| | | ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 6 TCACCCACGCGGCGTCG-CTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCT 64
Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143
||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||
Sbjct 65 GCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGAC 124
Query 144 CAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGG 203
||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 125 CAGCTACGGATCGTCGCCTTGGTGAGCCGTTACCTCACCAACTAGCTAATCCGACGCGGG 184
Query 204 CTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTA 263
| | || || ||| || || ||||| |||||||| ||||| ||||
Sbjct 185 CCCCTCCAATGGCGAAA------AA---------CTTTCCCCCGTAGGGCGTATAGGGTA 229
Query 264 TTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTACTCAC 323
||||| | |||||| ||||| ||| || || ||||| |||| | || ||||||||
Sbjct 230 TTAGCTGCAGTTTCCCGCAGTTATTCCCTACCACTGGGCAGGTTCCCACGCGTTACTCAC 289
Query 324 CCGTCCGCCGCTC 336
|||| |||| |||
Sbjct 290 CCGTGCGCCACTC 302
>seq163170
Length=29127
Score = 226 bits (250), Expect = 6e-57
Identities = 240/310 (77%), Gaps = 20/310 (6%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||||||||||||||||| || ||||||||||||||||||
Sbjct 27797 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 27855
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| |
Sbjct 27856 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 27915
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207
|| |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | |
Sbjct 27916 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 27975
Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267
|| || ||| || ||| |||| | | | | | || | ||||||||
Sbjct 27976 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 28021
Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325
| |||||||| ||| | ||| || ||| ||||| ||| || || ||||||||||
Sbjct 28022 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 28079
Query 326 GTCCGCCGCT 335
||||||| ||
Sbjct 28080 GTCCGCCACT 28089
>seq212791
Length=233936
Score = 206 bits (228), Expect = 6e-51
Identities = 180/220 (82%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58
|||||||| | | | | ||||||| ||| |||||| |||| ||||||| |||||||||
Sbjct 165201 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 165144
Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118
||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| ||
Sbjct 165143 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 165084
Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178
|||||| |||||||||| ||||||| || | ||| | | |||||| |||| ||||||
Sbjct 165083 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 165024
Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218
|||||||| ||||| | || ||||||||| | |||||
Sbjct 165023 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 164984
>seq231426
Length=569
Score = 176 bits (194), Expect = 1e-41
Identities = 158/196 (81%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61
|| || | ||| || |||||| | | ||| | ||||| || |||||||||||||||
Sbjct 451 TTCACGAACCGTAGGCCTTCTACCTC-CACAAGACATTG-CTCTGTCAGGCTTTCGCCCA 394
Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121
||| || |||||||||| || |||||||||||||| ||| | |||||| ||| |||||
Sbjct 393 TTGCGGAAAATTCCCCACTACTACCTCCCGTAGGAGTTTGGGCTGTGTCTTAGTCCCAGT 334
Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181
||| |||||||||||||| ||||| |||| |||| ||||||| || | | ||| ||||||
Sbjct 333 GTGGCTGATCATCCTCTCGGACCATTTACTGATCATCGCCTTAGTAATCTATTGCCTCAC 274
Query 182 CAACTAGCTAATCCGA 197
||||||||||||| ||
Sbjct 273 CAACTAGCTAATCAGA 258
>seq216306
Length=502
Score = 143 bits (158), Expect = 6e-32
Identities = 147/192 (77%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 145 AGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGC 204
|| |||||||||||||||||||| || ||||| |||||||||||||||||| | | |||
Sbjct 502 AGCTACGGATCGTCGCCTTGGTGGGCTCTTACCCCACCAACTAGCTAATCCGGCGTCGGC 443
Query 205 TCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTAT 264
||||| | |||| |||| |||||| |||||| || | || | |||||||||
Sbjct 442 TCATCCCAGCGCGCGTGGCCTTGCGGTCCCACGCTTTCACCTCTCGGTCCCATGCGGTAT 383
Query 265 TAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACC 324
|||| | |||| |||||||||||| |||||||||| | ||||| ||||||
Sbjct 382 TAGCCAGCCTTTCGACTGGTTATCCCCCACGTTGGGGCAGATTCCGACGCATTCCTCACC 323
Query 325 CGTCCGCCGCTC 336
|||||||| |||
Sbjct 322 CGTCCGCCACTC 311
>seq211067
Length=575
Score = 105 bits (116), Expect = 1e-20
Identities = 83/97 (86%), Gaps = 2/97 (2%)
Strand=Plus/Minus
Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61
||||| | |||||| ||||| | | | |||||||| ||| ||| |||||||||||||||
Sbjct 95 TTTACGACCCGAAGGCCTTCATCC-CTCACGCGGCGTTG-CTGCGTCAGGCTTTCGCCCA 38
Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGT 98
||| ||| ||||||||||||||||||||||||||||
Sbjct 37 TTGCGCAAAATTCCCCACTGCTGCCTCCCGTAGGAGT 1
>seq118994
Length=4049
Score = 100 bits (110), Expect = 6e-19
Identities = 134/183 (73%), Gaps = 5/183 (3%)
Strand=Plus/Plus
Query 16 ACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCC 75
||||||| | | ||| |||||||| || ||| || ||||||||| || |||||
Sbjct 625 ACCTTCTACCTC-CACACGGCATTG-CTCCTTCAAATTTACGCCCATTGCGGAAAATTCC 682
Query 76 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCC 135
||||||||||| | ||||||| ||| | | ||||||| | | || | |||||||||
Sbjct 683 CCACTGCTGCCCC---TAGGAGTTTGGGCTGCATCTCAGTCCTAATGCGGTTGATCATCC 739
Query 136 TCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCC 195
|||| | ||| || |||| ||| || || | | ||| |||| |||||||| |||||
Sbjct 740 TCTCGAATCAGCTATTGATCATCGTCTCAGTAAACTATTGCCTCGCCAACTAGTTAATCA 799
Query 196 GAC 198
|||
Sbjct 800 GAC 802
>seq194638
Length=571
Score = 91.5 bits (100), Expect = 3e-16
Identities = 146/206 (71%), Gaps = 9/206 (4%)
Strand=Plus/Plus
Query 135 CTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194
||||||| || | ||| ||||||||||||||| ||| ||||| ||||||||||||||||
Sbjct 1 CTCTCAGGCCGGCTACCGATCGTCGCCTTGGTAGGCCTTTACCCCACCAACTAGCTAATC 60
Query 195 CGACCTAGGCTCATCTGATAGCGCAAGGCC--CGAAGGTCCCCTGCTTTCTCCCGTAGGA 252
||| | | | || || | || | || ||| ||||| || | ||
Sbjct 61 GGACGCGGACCCCTCCTTCAGTGTGAGATCTTTCAA----CCCCACTTTCACCTCTCGGT 116
Query 253 CGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGAT--TCCT 310
|||||||||||||||| |||||| ||||| |||| || ||||| | |||
Sbjct 117 CGTATGCGGTATTAGCCCGGGTTTCCCCGGGTTATTCCCCGCTGAAGGGCAGGTCATCC- 175
Query 311 AGGCATTACTCACCCGTCCGCCGCTC 336
| || |||||||||||| ||||||||
Sbjct 176 ACGCGTTACTCACCCGTTCGCCGCTC 201
>seq197069
Length=795
Score = 80.6 bits (88), Expect = 6e-13
Identities = 121/170 (71%), Gaps = 4/170 (2%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
||| ||||| || || ||| |||||||| |||| || |||| | |||| | | |
Sbjct 246 CACACGGCACTG-CTCCGTCAAACTTTCGCCAATTGCAGAAAATTCTCAGCTGCGGGCCC 304
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
||||||| ||| | | ||| ||| | | | || || ||||| ||||| ||||| |
Sbjct 305 ---TAGGAGTTTGGGCTGCATCTTAGTCCTAATATGGCTAATCATTCTCTCGAACCAGCT 361
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198
| |||| ||| ||| || | | ||| ||||||||||||| ||||| |||
Sbjct 362 ATTGATCATCGTCTTAGTAAACTATTGCCTCACCAACTAGTTAATCAGAC 411
>seq28663
Length=1805
Score = 77.0 bits (84), Expect = 7e-12
Identities = 65/79 (82%), Gaps = 1/79 (1%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||| |||||| |||||| || | || |||||||||||||
Sbjct 1585 CACGCGGCATTG-CTCCATCATGCTTTCACCCATTACGAAAAAATCTCCACTGCTGCCTC 1643
Query 89 CCGTAGGAGTCTGGACCGT 107
|||||||||| ||| ||||
Sbjct 1644 CCGTAGGAGTTTGGGCCGT 1662
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1069443408640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |