Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq238195 405 1e-110 seq155949 313 5e-83 seq163170 226 6e-57 seq212791 206 6e-51 seq231426 176 1e-41 seq216306 143 6e-32 seq211067 105 1e-20 seq118994 100 6e-19 seq194638 91.5 3e-16 seq197069 80.6 6e-13 seq28663 77.0 7e-12 >seq238195 Length=484 Score = 405 bits (448), Expect = 1e-110 Identities = 293/336 (87%), Gaps = 2/336 (1%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| ||| || ||||||| ||| |||||||| | | ||||||||||||||||||| Sbjct 388 CTTTACAACCCGCAGGCCTTCTT-CACCCACGCGGCGTCG-CTGGATCAGGCTTTCGCCC 331 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 330 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 271 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||| || |||||||||||||| ||||||||||||||||||| ||| ||||| | Sbjct 270 TGTGGCTGGTCGTCCTCTCAGACCAGCTACGGATCGTCGCCTTGGTAGGCCGTTACCCTA 211 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||||||| | |||||||||| |||||| ||||| ||||||| |||| Sbjct 210 CCAACTAGCTAATCCGACTTGGGCTCATCTGTTAGCGCCAGGCCTTGCGGTCCCCGGCTT 151 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 || |||||| |||||||||||||||| |||||| ||| |||||||||| ||| Sbjct 150 TCCACCGTAGTGCGTATGCGGTATTAGCCCGAGTTTCCCCGGGTTGTCCCCCACTAACAG 91 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 ||||||||| | || ||||||||||||||||||||| Sbjct 90 GCAGATTCCCAAGCGTTACTCACCCGTCCGCCGCTC 55 >seq155949 Length=2432 Score = 313 bits (346), Expect = 5e-83 Identities = 257/313 (82%), Gaps = 16/313 (5%) Strand=Plus/Plus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| |||||||| | | ||||||||||||| |||||||||||||||||||||||||||| Sbjct 6 TCACCCACGCGGCGTCG-CTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCT 64 Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143 ||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||| Sbjct 65 GCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGAC 124 Query 144 CAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGG 203 ||| |||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 125 CAGCTACGGATCGTCGCCTTGGTGAGCCGTTACCTCACCAACTAGCTAATCCGACGCGGG 184 Query 204 CTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTA 263 | | || || ||| || || ||||| |||||||| ||||| |||| Sbjct 185 CCCCTCCAATGGCGAAA------AA---------CTTTCCCCCGTAGGGCGTATAGGGTA 229 Query 264 TTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTACTCAC 323 ||||| | |||||| ||||| ||| || || ||||| |||| | || |||||||| Sbjct 230 TTAGCTGCAGTTTCCCGCAGTTATTCCCTACCACTGGGCAGGTTCCCACGCGTTACTCAC 289 Query 324 CCGTCCGCCGCTC 336 |||| |||| ||| Sbjct 290 CCGTGCGCCACTC 302 >seq163170 Length=29127 Score = 226 bits (250), Expect = 6e-57 Identities = 240/310 (77%), Gaps = 20/310 (6%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 27797 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 27855 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 27856 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 27915 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 27916 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 27975 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | | || | |||||||| Sbjct 27976 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 28021 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| ||||| ||| || || |||||||||| Sbjct 28022 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 28079 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 28080 GTCCGCCACT 28089 >seq212791 Length=233936 Score = 206 bits (228), Expect = 6e-51 Identities = 180/220 (82%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 165201 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 165144 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 165143 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 165084 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 165083 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 165024 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 165023 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 164984 >seq231426 Length=569 Score = 176 bits (194), Expect = 1e-41 Identities = 158/196 (81%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || || | ||| || |||||| | | ||| | ||||| || ||||||||||||||| Sbjct 451 TTCACGAACCGTAGGCCTTCTACCTC-CACAAGACATTG-CTCTGTCAGGCTTTCGCCCA 394 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||| || |||||||||||||| ||| | |||||| ||| ||||| Sbjct 393 TTGCGGAAAATTCCCCACTACTACCTCCCGTAGGAGTTTGGGCTGTGTCTTAGTCCCAGT 334 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| |||||||||||||| ||||| |||| |||| ||||||| || | | ||| |||||| Sbjct 333 GTGGCTGATCATCCTCTCGGACCATTTACTGATCATCGCCTTAGTAATCTATTGCCTCAC 274 Query 182 CAACTAGCTAATCCGA 197 ||||||||||||| || Sbjct 273 CAACTAGCTAATCAGA 258 >seq216306 Length=502 Score = 143 bits (158), Expect = 6e-32 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 145 AGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGC 204 || |||||||||||||||||||| || ||||| |||||||||||||||||| | | ||| Sbjct 502 AGCTACGGATCGTCGCCTTGGTGGGCTCTTACCCCACCAACTAGCTAATCCGGCGTCGGC 443 Query 205 TCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTAT 264 ||||| | |||| |||| |||||| |||||| || | || | ||||||||| Sbjct 442 TCATCCCAGCGCGCGTGGCCTTGCGGTCCCACGCTTTCACCTCTCGGTCCCATGCGGTAT 383 Query 265 TAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACC 324 |||| | |||| |||||||||||| |||||||||| | ||||| |||||| Sbjct 382 TAGCCAGCCTTTCGACTGGTTATCCCCCACGTTGGGGCAGATTCCGACGCATTCCTCACC 323 Query 325 CGTCCGCCGCTC 336 |||||||| ||| Sbjct 322 CGTCCGCCACTC 311 >seq211067 Length=575 Score = 105 bits (116), Expect = 1e-20 Identities = 83/97 (86%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||| | |||||| ||||| | | | |||||||| ||| ||| ||||||||||||||| Sbjct 95 TTTACGACCCGAAGGCCTTCATCC-CTCACGCGGCGTTG-CTGCGTCAGGCTTTCGCCCA 38 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGT 98 ||| ||| |||||||||||||||||||||||||||| Sbjct 37 TTGCGCAAAATTCCCCACTGCTGCCTCCCGTAGGAGT 1 >seq118994 Length=4049 Score = 100 bits (110), Expect = 6e-19 Identities = 134/183 (73%), Gaps = 5/183 (3%) Strand=Plus/Plus Query 16 ACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCC 75 ||||||| | | ||| |||||||| || ||| || ||||||||| || ||||| Sbjct 625 ACCTTCTACCTC-CACACGGCATTG-CTCCTTCAAATTTACGCCCATTGCGGAAAATTCC 682 Query 76 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCC 135 ||||||||||| | ||||||| ||| | | ||||||| | | || | ||||||||| Sbjct 683 CCACTGCTGCCCC---TAGGAGTTTGGGCTGCATCTCAGTCCTAATGCGGTTGATCATCC 739 Query 136 TCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCC 195 |||| | ||| || |||| ||| || || | | ||| |||| |||||||| ||||| Sbjct 740 TCTCGAATCAGCTATTGATCATCGTCTCAGTAAACTATTGCCTCGCCAACTAGTTAATCA 799 Query 196 GAC 198 ||| Sbjct 800 GAC 802 >seq194638 Length=571 Score = 91.5 bits (100), Expect = 3e-16 Identities = 146/206 (71%), Gaps = 9/206 (4%) Strand=Plus/Plus Query 135 CTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 ||||||| || | ||| ||||||||||||||| ||| ||||| |||||||||||||||| Sbjct 1 CTCTCAGGCCGGCTACCGATCGTCGCCTTGGTAGGCCTTTACCCCACCAACTAGCTAATC 60 Query 195 CGACCTAGGCTCATCTGATAGCGCAAGGCC--CGAAGGTCCCCTGCTTTCTCCCGTAGGA 252 ||| | | | || || | || | || ||| ||||| || | || Sbjct 61 GGACGCGGACCCCTCCTTCAGTGTGAGATCTTTCAA----CCCCACTTTCACCTCTCGGT 116 Query 253 CGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGAT--TCCT 310 |||||||||||||||| |||||| ||||| |||| || ||||| | ||| Sbjct 117 CGTATGCGGTATTAGCCCGGGTTTCCCCGGGTTATTCCCCGCTGAAGGGCAGGTCATCC- 175 Query 311 AGGCATTACTCACCCGTCCGCCGCTC 336 | || |||||||||||| |||||||| Sbjct 176 ACGCGTTACTCACCCGTTCGCCGCTC 201 >seq197069 Length=795 Score = 80.6 bits (88), Expect = 6e-13 Identities = 121/170 (71%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||| ||||| || || ||| |||||||| |||| || |||| | |||| | | | Sbjct 246 CACACGGCACTG-CTCCGTCAAACTTTCGCCAATTGCAGAAAATTCTCAGCTGCGGGCCC 304 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 ||||||| ||| | | ||| ||| | | | || || ||||| ||||| ||||| | Sbjct 305 ---TAGGAGTTTGGGCTGCATCTTAGTCCTAATATGGCTAATCATTCTCTCGAACCAGCT 361 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 | |||| ||| ||| || | | ||| ||||||||||||| ||||| ||| Sbjct 362 ATTGATCATCGTCTTAGTAAACTATTGCCTCACCAACTAGTTAATCAGAC 411 >seq28663 Length=1805 Score = 77.0 bits (84), Expect = 7e-12 Identities = 65/79 (82%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||| |||||| |||||| || | || ||||||||||||| Sbjct 1585 CACGCGGCATTG-CTCCATCATGCTTTCACCCATTACGAAAAAATCTCCACTGCTGCCTC 1643 Query 89 CCGTAGGAGTCTGGACCGT 107 |||||||||| ||| |||| Sbjct 1644 CCGTAGGAGTTTGGGCCGT 1662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1069443408640