Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= AAMG01001432.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
seq163170 219 8e-55
seq155949 212 1e-52
seq238195 203 6e-50
seq231426 136 8e-30
seq212791 136 8e-30
seq194638 120 6e-25
seq118994 93.3 8e-17
seq211067 84.2 4e-14
seq176643 82.4 2e-13
seq197069 75.2 2e-11
>seq163170
Length=29127
Score = 219 bits (242), Expect = 8e-55
Identities = 233/305 (76%), Gaps = 18/305 (6%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| | || || |||||||||||||||||||||
Sbjct 27802 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 27861
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| |||
Sbjct 27862 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 27921
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
| ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || |
Sbjct 27922 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 27981
Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239
|| ||| || || ||| ||||| | | || | |||||||||
Sbjct 27982 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 28025
Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299
|||||||| ||| |||| ||| || |||||||| || ||| ||||||||||||||||
Sbjct 28026 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 28084
Query 300 CCACT 304
|||||
Sbjct 28085 CCACT 28089
>seq155949
Length=2432
Score = 212 bits (234), Expect = 1e-52
Identities = 152/175 (87%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
|||||||||| |||||| || | |||||||| |||||| |||||||||||||||||||||
Sbjct 16 GGCGTCGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 75
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||||||||||||||| |||||| | ||| |||||||| || ||||| |||
Sbjct 76 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACGGAT 135
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175
||||| ||||||| || ||| ||||||||||| |||||| | |||| |||| ||
Sbjct 136 CGTCGCCTTGGTGAGCCGTTACCTCACCAACTAGCTAATCCGACGCGGGCCCCTC 190
>seq238195
Length=484
Score = 203 bits (224), Expect = 6e-50
Identities = 231/305 (76%), Gaps = 5/305 (2%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
|||||||||| |||||| |||| |||||||| |||||| |||||||||||||||||||||
Sbjct 356 GGCGTCGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 297
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
|||||||| |||||||||||| ||| |||||| | || |||||||| || ||||| |||
Sbjct 296 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCTACGGAT 237
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
||||| |||||| ||| ||| | |||||||| |||||| | | | || ||||| | |
Sbjct 236 CGTCGCCTTGGTAGGCCGTTACCCTACCAACTAGCTAATCCGACTTGGGCTCATCTGTTA 177
Query 181 GCGATAAATCTT-TGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239
||| | ||| |||| | | | ||| || | ||||||||||||||
Sbjct 176 GCGCCAGGCCTTGCGGTCCCCGGCT--TTCCA-CCGTAGTGCGTATGCGGTATTAGCCCG 120
Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299
|||||| ||| | || | || | |||||| || | || | ||||||||||||||||
Sbjct 119 AGTTTCCCCGGGTTGTCCCCCACTAACAGGCAGATT-CCCAAGCGTTACTCACCCGTCCG 61
Query 300 CCACT 304
|| ||
Sbjct 60 CCGCT 56
>seq231426
Length=569
Score = 136 bits (150), Expect = 8e-30
Identities = 128/163 (79%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72
||||| |||| ||||||| | || || ||||||| || |||||||||||||| ||||| |
Sbjct 408 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTACTACCTCCCGTAGGAGTTTGGGCTG 349
Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132
||||| ||||||| |||||| | ||| |||||| | || ||| |||| ||| ||| ||
Sbjct 348 TGTCTTAGTCCCAGTGTGGCTGATCATCCTCTCGGACCATTTACTGATCATCGCCTTAGT 289
Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175
||||| ||||||||||| |||||| | | |||||| ||
Sbjct 288 AATCTATTGCCTCACCAACTAGCTAATCAGATGTGAGCCCTTC 246
>seq212791
Length=233936
Score = 136 bits (150), Expect = 8e-30
Identities = 122/153 (80%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
|||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| ||||||
Sbjct 165161 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 165102
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126
||||||||||||||||||| |||||| | ||| || || || |||| ||| | ||
Sbjct 165101 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 165042
Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159
|||||| || ||| || ||||||||||||||
Sbjct 165041 CTTGGTCAGCCTTTACCTGACCAACTACCTAAT 165009
>seq194638
Length=571
Score = 120 bits (132), Expect = 6e-25
Identities = 150/204 (74%), Gaps = 4/204 (2%)
Strand=Plus/Plus
Query 101 CTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160
||||||| ||||||||||||||||| |||||| ||| ||| | ||||||||| ||||||
Sbjct 1 CTCTCAGGCCGGCTACCGATCGTCGCCTTGGTAGGCCTTTACCCCACCAACTAGCTAATC 60
Query 161 GGCCGCGAGCCCATCTTTCAGCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGAC 220
|| |||| ||| || ||||| | | ||||| |||| | | ||| | |
Sbjct 61 GGACGCGGACCCCTCCTTCAGTGTGAGATCTT---TCAACCCCACTTTCACCTCTCGGTC 117
Query 221 ATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCA 280
|||||||||||||| |||||| |||||||| | ||||| ||||||| ||
Sbjct 118 -GTATGCGGTATTAGCCCGGGTTTCCCCGGGTTATTCCCCGCTGAAGGGCAGGTCATCCA 176
Query 281 CGTGTTACTCACCCGTCCGCCACT 304
|| ||||||||||||| |||| ||
Sbjct 177 CGCGTTACTCACCCGTTCGCCGCT 200
>seq118994
Length=4049
Score = 93.3 bits (102), Expect = 8e-17
Identities = 126/175 (72%), Gaps = 3/175 (2%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||| || | ||||||| | || || ||||||||||| ||| |||
Sbjct 642 GGCATTGCTCCTTCAAATTTACGCCCATTGCGGAAAATTCCCCACTGCTG---CCCCTAG 698
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
|||| ||||| | ||||||||| |||| || | ||| |||||| | |||| |||
Sbjct 699 GAGTTTGGGCTGCATCTCAGTCCTAATGCGGTTGATCATCCTCTCGAATCAGCTATTGAT 758
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175
| ||| || || ||||| ||| ||||||| ||||| | ||||||||| ||
Sbjct 759 CATCGTCTCAGTAAACTATTGCCTCGCCAACTAGTTAATCAGACGCGAGCCCCTC 813
>seq211067
Length=575
Score = 84.2 bits (92), Expect = 4e-14
Identities = 57/64 (89%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||||| ||||| ||||| |||| ||||||| |||| || |||||||||||||||||||||
Sbjct 64 GGCGTTGCTGCGTCAGGCTTTCGCCCATTGCGCAAAATTCCCCACTGCTGCCTCCCGTAG 5
Query 61 GAGT 64
||||
Sbjct 4 GAGT 1
>seq176643
Length=2232
Score = 82.4 bits (90), Expect = 2e-13
Identities = 132/190 (69%), Gaps = 10/190 (5%)
Strand=Plus/Minus
Query 125 GGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTT------ 178
||||||||| || ||| |||||||||||||| || || |||| | |||||||
Sbjct 2232 GGCTTGGTGAGCCGTTACCTCACCAACTACCTGATGGGACGCGGACTCATCTTTTGGTGA 2173
Query 179 CAGCGATAAATCTTTGGTCAAAGAATGATGCCAT----CCTCTGACATTATGCGGTATTA 234
|||| ||| | | | || | |||| ||| || |||| ||||||||
Sbjct 2172 CAGCCCGAAAGCCGCCTTTTACCCCTGGTTCCATGGAACCTGTGGTCTTATCCGGTATTA 2113
Query 235 GCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCC 294
|| | |||||| | ||||| ||| || |||||||| || |||||||||| |||||
Sbjct 2112 GCCCTAGTTTCCCAGAGTTATCCCAGTCCTAAAGGCAGATTATCCACGTGTTACGCACCC 2053
Query 295 GTCCGCCACT 304
||||||| ||
Sbjct 2052 GTCCGCCGCT 2043
>seq197069
Length=795
Score = 75.2 bits (82), Expect = 2e-11
Identities = 94/129 (73%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 47 GCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCA 106
||||| || ||||||| ||||| | ||| ||||| ||| |||| ||| |||||
Sbjct 294 GCTGCGGGCCCTAGGAGTTTGGGCTGCATCTTAGTCCTAATATGGCTAATCATTCTCTCG 353
Query 107 GTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGC 166
|| |||| |||| ||| ||| || ||||| ||||||||||| ||||| | |||
Sbjct 354 AACCAGCTATTGATCATCGTCTTAGTAAACTATTGCCTCACCAACTAGTTAATCAGACGC 413
Query 167 GAGCCCATC 175
|||||| ||
Sbjct 414 GAGCCCCTC 422
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 996018935808
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |