Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq163170 219 8e-55 seq155949 212 1e-52 seq238195 203 6e-50 seq231426 136 8e-30 seq212791 136 8e-30 seq194638 120 6e-25 seq118994 93.3 8e-17 seq211067 84.2 4e-14 seq176643 82.4 2e-13 seq197069 75.2 2e-11 >seq163170 Length=29127 Score = 219 bits (242), Expect = 8e-55 Identities = 233/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 27802 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 27861 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 27862 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 27921 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || | Sbjct 27922 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 27981 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 27982 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 28025 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 28026 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 28084 Query 300 CCACT 304 ||||| Sbjct 28085 CCACT 28089 >seq155949 Length=2432 Score = 212 bits (234), Expect = 1e-52 Identities = 152/175 (87%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 |||||||||| |||||| || | |||||||| |||||| ||||||||||||||||||||| Sbjct 16 GGCGTCGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 75 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || ||||| ||| Sbjct 76 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACGGAT 135 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 ||||| ||||||| || ||| ||||||||||| |||||| | |||| |||| || Sbjct 136 CGTCGCCTTGGTGAGCCGTTACCTCACCAACTAGCTAATCCGACGCGGGCCCCTC 190 >seq238195 Length=484 Score = 203 bits (224), Expect = 6e-50 Identities = 231/305 (76%), Gaps = 5/305 (2%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 |||||||||| |||||| |||| |||||||| |||||| ||||||||||||||||||||| Sbjct 356 GGCGTCGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 297 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||| |||||||||||| ||| |||||| | || |||||||| || ||||| ||| Sbjct 296 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCTACGGAT 237 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| |||||| ||| ||| | |||||||| |||||| | | | || ||||| | | Sbjct 236 CGTCGCCTTGGTAGGCCGTTACCCTACCAACTAGCTAATCCGACTTGGGCTCATCTGTTA 177 Query 181 GCGATAAATCTT-TGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 ||| | ||| |||| | | | ||| || | |||||||||||||| Sbjct 176 GCGCCAGGCCTTGCGGTCCCCGGCT--TTCCA-CCGTAGTGCGTATGCGGTATTAGCCCG 120 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||| ||| | || | || | |||||| || | || | |||||||||||||||| Sbjct 119 AGTTTCCCCGGGTTGTCCCCCACTAACAGGCAGATT-CCCAAGCGTTACTCACCCGTCCG 61 Query 300 CCACT 304 || || Sbjct 60 CCGCT 56 >seq231426 Length=569 Score = 136 bits (150), Expect = 8e-30 Identities = 128/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| ||||||| | || || ||||||| || |||||||||||||| ||||| | Sbjct 408 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTACTACCTCCCGTAGGAGTTTGGGCTG 349 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||| ||||||| |||||| | ||| |||||| | || ||| |||| ||| ||| || Sbjct 348 TGTCTTAGTCCCAGTGTGGCTGATCATCCTCTCGGACCATTTACTGATCATCGCCTTAGT 289 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 ||||| ||||||||||| |||||| | | |||||| || Sbjct 288 AATCTATTGCCTCACCAACTAGCTAATCAGATGTGAGCCCTTC 246 >seq212791 Length=233936 Score = 136 bits (150), Expect = 8e-30 Identities = 122/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 165161 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 165102 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 165101 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 165042 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| || |||||||||||||| Sbjct 165041 CTTGGTCAGCCTTTACCTGACCAACTACCTAAT 165009 >seq194638 Length=571 Score = 120 bits (132), Expect = 6e-25 Identities = 150/204 (74%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 101 CTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 ||||||| ||||||||||||||||| |||||| ||| ||| | ||||||||| |||||| Sbjct 1 CTCTCAGGCCGGCTACCGATCGTCGCCTTGGTAGGCCTTTACCCCACCAACTAGCTAATC 60 Query 161 GGCCGCGAGCCCATCTTTCAGCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGAC 220 || |||| ||| || ||||| | | ||||| |||| | | ||| | | Sbjct 61 GGACGCGGACCCCTCCTTCAGTGTGAGATCTT---TCAACCCCACTTTCACCTCTCGGTC 117 Query 221 ATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCA 280 |||||||||||||| |||||| |||||||| | ||||| ||||||| || Sbjct 118 -GTATGCGGTATTAGCCCGGGTTTCCCCGGGTTATTCCCCGCTGAAGGGCAGGTCATCCA 176 Query 281 CGTGTTACTCACCCGTCCGCCACT 304 || ||||||||||||| |||| || Sbjct 177 CGCGTTACTCACCCGTTCGCCGCT 200 >seq118994 Length=4049 Score = 93.3 bits (102), Expect = 8e-17 Identities = 126/175 (72%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||| || | ||||||| | || || ||||||||||| ||| ||| Sbjct 642 GGCATTGCTCCTTCAAATTTACGCCCATTGCGGAAAATTCCCCACTGCTG---CCCCTAG 698 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||| ||||| | ||||||||| |||| || | ||| |||||| | |||| ||| Sbjct 699 GAGTTTGGGCTGCATCTCAGTCCTAATGCGGTTGATCATCCTCTCGAATCAGCTATTGAT 758 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 | ||| || || ||||| ||| ||||||| ||||| | ||||||||| || Sbjct 759 CATCGTCTCAGTAAACTATTGCCTCGCCAACTAGTTAATCAGACGCGAGCCCCTC 813 >seq211067 Length=575 Score = 84.2 bits (92), Expect = 4e-14 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||||| ||||| ||||| |||| ||||||| |||| || ||||||||||||||||||||| Sbjct 64 GGCGTTGCTGCGTCAGGCTTTCGCCCATTGCGCAAAATTCCCCACTGCTGCCTCCCGTAG 5 Query 61 GAGT 64 |||| Sbjct 4 GAGT 1 >seq176643 Length=2232 Score = 82.4 bits (90), Expect = 2e-13 Identities = 132/190 (69%), Gaps = 10/190 (5%) Strand=Plus/Minus Query 125 GGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTT------ 178 ||||||||| || ||| |||||||||||||| || || |||| | ||||||| Sbjct 2232 GGCTTGGTGAGCCGTTACCTCACCAACTACCTGATGGGACGCGGACTCATCTTTTGGTGA 2173 Query 179 CAGCGATAAATCTTTGGTCAAAGAATGATGCCAT----CCTCTGACATTATGCGGTATTA 234 |||| ||| | | | || | |||| ||| || |||| |||||||| Sbjct 2172 CAGCCCGAAAGCCGCCTTTTACCCCTGGTTCCATGGAACCTGTGGTCTTATCCGGTATTA 2113 Query 235 GCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCC 294 || | |||||| | ||||| ||| || |||||||| || |||||||||| ||||| Sbjct 2112 GCCCTAGTTTCCCAGAGTTATCCCAGTCCTAAAGGCAGATTATCCACGTGTTACGCACCC 2053 Query 295 GTCCGCCACT 304 ||||||| || Sbjct 2052 GTCCGCCGCT 2043 >seq197069 Length=795 Score = 75.2 bits (82), Expect = 2e-11 Identities = 94/129 (73%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 47 GCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCA 106 ||||| || ||||||| ||||| | ||| ||||| ||| |||| ||| ||||| Sbjct 294 GCTGCGGGCCCTAGGAGTTTGGGCTGCATCTTAGTCCTAATATGGCTAATCATTCTCTCG 353 Query 107 GTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGC 166 || |||| |||| ||| ||| || ||||| ||||||||||| ||||| | ||| Sbjct 354 AACCAGCTATTGATCATCGTCTTAGTAAACTATTGCCTCACCAACTAGTTAATCAGACGC 413 Query 167 GAGCCCATC 175 |||||| || Sbjct 414 GAGCCCCTC 422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 996018935808