Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq198914 250 6e-64
seq206697 233 4e-59
seq163170 226 7e-57
seq193326 214 4e-53
seq164654 179 9e-43
seq172238 178 3e-42
seq212791 167 5e-39
seq213222 113 1e-22
seq218687 87.8 4e-15
seq125016 73.4 9e-11
>seq198914
Length=2821
Score = 250 bits (276), Expect = 6e-64
Identities = 308/412 (75%), Gaps = 22/412 (5%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| |||||||||||||||| ||||||| |||| ||| ||| | | | ||
Sbjct 550 CGACTACGCCTTTCGGCCTCGCCTTAGGTCCCGACTTACCCTGGGAGGACGAGCCTTCCC 609
Query 61 CTGGAACCCTT-GGATAATCGGCGGACGGGATTCCCACC-CGTCACACGCTACTCATGCC 118
| ||||||||| || | | ||||| |||||| |||| | | |||||||||||||
Sbjct 610 CAGGAACCCTTAGGCTTA-CGGCGAGGTGGATTCTCACCACCTTTATCGCTACTCATGCC 668
Query 119 TGCATTCTCACT-CGCA----TCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTG 173
||||||||||| | || || | || || || || |||| |||| ||| ||
Sbjct 669 AGCATTCTCACTTCTCAATAGTCCAGGCCTCCTTACGGTAACCCTTCAGC----CCATTG 724
Query 174 ACACGACGCTCCCCTACCCAACCACACAGGTTGCCAC----AGCTTCGGCGGATAACTTA 229
| | ||||||||||||| | | | | | || ||||||||| |||
Sbjct 725 AGA--ACGCTCCCCTACCGCTGTATAAA---TACAACCCGTAGCTTCGGCACCGGGCTTG 779
Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTT-GACCAGTGAGCTATTACGCACTCTTTC 288
||||||| | |||| |||||||| | || | | |||||||| || |||||||||||||
Sbjct 780 AGCCCCGATTCATTTTCGGCGCGAAGTCGCATCGACCAGTGGGCAGTTACGCACTCTTTA 839
Query 289 AAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCA 348
|||| |||||||||| ||||| ||||||||| |||||| || ||| |||||||||| |||
Sbjct 840 AAGGGTGGCTGCTTCTAAGCCTACCTCCTGGCTGTCTATGCGACTTCACATCCTTTACCA 899
Query 349 CTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|| || | | || |||||||||||||| |||||||| |||||||||||||
Sbjct 900 CTTAGCCCGAATTTTGGGGCCTTAGCTGACGATCTGGGGTGTTTCCCTCTCG 951
>seq206697
Length=2363
Score = 233 bits (258), Expect = 4e-59
Identities = 304/413 (74%), Gaps = 22/413 (5%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
|||||||||||||||||||||||||||| ||| ||||||| | || || ||| | |
Sbjct 348 CGACTACGCCTGTCGGCCTCGCCTTAGGGACCGGCTCACCCTGCGCGGATTAACCTTGCG 407
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGAT-TCCCACCCGTCACA---CGCTACTCATG 116
| |||||||||||| |||||| |||| || | | | || | |||||||||||
Sbjct 408 CAGGAACCCTTGGACTTACGGCGG---GGATGTCTCTCACATCCCTTTTCGCTACTCATG 464
Query 117 CCTGCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGAC 175
| |||||| |||| | ||| | ||||| |||| |||| || |||| | |
Sbjct 465 TCAGCATTCGCACTTCCCAT-ACCTCCAGGACACC-TCACGATGCCCCTTCGCAGGTTTA 522
Query 176 ACGA-CGCTCCCCTAC-------CCAACCACACAGGTTGCCACAGCTTCGGCGGATAACT 227
|| |||||| |||| | | |||| |||||||||||| | || ||
Sbjct 523 GGGAACGCTCCGCTACTGCGTGCCTTGCGGCACAC----CCACAGCTTCGGTGTATGGCT 578
Query 228 TAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTT 287
| ||||||| |||||| ||||||| | || ||||||||||||||||||||||| |||||
Sbjct 579 TGAGCCCCGTTACATTTTCGGCGCAGGATAACTTGACCAGTGAGCTATTACGCTTTCTTT 638
Query 288 CAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCC 347
|| | |||||||||| |||||||| ||||||||||| | ||||||||||||||
Sbjct 639 AAAAGGTGGCTGCTTCTAAGCCAACTTCCTGGTTGTCAGTGTCGTCCCACATCCTTTCCC 698
Query 348 ACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
||| || || |||||||| ||||||||| | |||||||| || ||||||||
Sbjct 699 ACTTAGCCATAACTTAGGGACCTTAGCTGGCGGTCTGGGCTCTTCCCCTCTCG 751
>seq163170
Length=29127
Score = 226 bits (250), Expect = 7e-57
Identities = 302/409 (74%), Gaps = 18/409 (4%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 22858 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 22917
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||||| | |||| | | |||||| |||| | || |||||| |||
Sbjct 22918 GAGGAACCCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 22977
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177
||||||| || ||| || |||||| | | || | ||| |||| || || | |
Sbjct 22978 ACATTCTCGCTTCCGCTTCG--TCCACCGC-CGCTCGCGCGGTTGCTTTCCC-CTAAGGC 23033
Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231
| ||||||||||||| | || ||| | ||||||||||||| ||| |||| |
Sbjct 23034 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 23089
Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291
||||| | ||| ||||||| | | || || |||||||||||||||||||||||||||
Sbjct 23090 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 23148
Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351
| |||||||||| | || |||||||||| ||||| ||| | | || |||||| |||||
Sbjct 23149 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 23208
Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|| || |||||||||||||||| ||||| |||||||||||||||||
Sbjct 23209 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 23257
>seq193326
Length=1315
Score = 214 bits (236), Expect = 4e-53
Identities = 307/420 (73%), Gaps = 27/420 (6%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| |||||||||||||||| |||||| |||| | || ||| ||| | |
Sbjct 940 CGACTACGCCTTTCGGCCTCGCCTTAGGGACCGACTAACCCTGAGCGGACGAACCTTCCT 881
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
| |||| |||| || |||||| || | ||| ||| || | ||||||| ||||
Sbjct 880 CAGGAAACCTTAGACTTTCGGCGAGCGTGGTTCTCACACGCTTTATCGCTACTTGTGCCG 821
Query 120 GCATTCTCACT-CGCATCAACTCCACCACA-CAGTCACCCGGCAGCTTCACCAC--TGAC 175
||| || || | || || ||||||| | || | | ||||||| | |||
Sbjct 820 GCAGAGTCTCTTCTCAACAG-TCCACCAGTTCTTTCGATCTGA--CTTCACCCCGTTGAG 764
Query 176 ACGACGCTCCCCTACC--CAACCAC------ACAGG---TTG--CCACAGCTTCGGCGGA 222
| | |||| |||||| |||| || | | | ||| || ||||||||| |
Sbjct 763 A--ATGCTCTCCTACCACCAACGACTTCCGAAGAAGCCATTGATCCGCAGCTTCGGT--A 708
Query 223 TAAC--TTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGC 280
| || || ||||||| |||||| ||||| |||| ||||||||||||||||||||||||
Sbjct 707 TCACGCTTGAGCCCCGTTACATTGTCGGCACGGAGCCACTTGACCAGTGAGCTATTACGC 648
Query 281 ACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATC 340
||||| ||||||||||||||| ||||||||||||||| ||||| || |||||||||
Sbjct 647 TTTCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTGGCTGTCTGTGCGTCTCCACATC 588
Query 341 CTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|||||||||| || | || ||| ||||||||| | |||||| |||| ||||||||
Sbjct 587 CTTTCCCACTTAGCGTGAATTTTGGGACCTTAGCTGGCGGTCTGGGTTGTTCCCCTCTCG 528
>seq164654
Length=1436
Score = 179 bits (198), Expect = 9e-43
Identities = 295/418 (71%), Gaps = 28/418 (7%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| |||||||||||||||| |||||| |||| | ||||| ||||| ||
Sbjct 261 CGACTACGCCTCTCGGCCTCGCCTTAGGTACCGACTAACCCTGAGCAGATTAACTTTACT 320
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
| |||| |||| | | ||||| |||| || |||||| | ||||||| |||||
Sbjct 321 CAGGAAACCTTAGGTTTACGGCGCGCGGGGATCTCACCCGCGTTATCGCTACTTATGCCG 380
Query 120 GCAT--TCT----CACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTG 173
|| ||| | |||| |||| | || | || ||| ||||||| ||
Sbjct 381 ACAGAGTCTTTTCCGATCGCTCCAACGGC-CCTTTCGGT-ACC-----GCTTCACAGCT- 432
Query 174 ACACGACGCTCCCCTACCCAACCACACAGGTTGCCACAGC-----------TTCGGCGGA 222
|| | |||| |||||| | || || |||| || || |||||
Sbjct 433 ACGGAATGCTCGCCTACC-ATCCGCAGTA-TTGCTACTGCGAATCCGAAACTTCGGTACG 490
Query 223 TAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCAC 282
| || ||||||| || ||| ||||||| | ||||||||||||||||||||||
Sbjct 491 TCGTTTGAGCCCCGTTATATTGTCGGCGCAGGGCTGCTTGACCAGTGAGCTATTACGCTT 550
Query 283 TCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCT 342
||||| ||||||||||||||| ||||||||||||||| ||||| || | | || ||||
Sbjct 551 TCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTGGCTGTCTGTGCTTCCCTACTTCCT 610
Query 343 TTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|| ||||| | ||| | || ||| |||||| || | ||||||||||||||||||||
Sbjct 611 TTTCCACTTAACCACGATTTTGGGACCTTAGTTGTCGGTCTGGGCTGTTTCCCTCTCG 668
>seq172238
Length=423
Score = 178 bits (196), Expect = 3e-42
Identities = 225/307 (73%), Gaps = 17/307 (6%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| |||||||||||||||| ||||||| |||| | || ||| ||| | |
Sbjct 305 CGACTACGCCTTTCGGCCTCGCCTTAGGTCCCGACTAACCCTGAGCCGACGAACGTTGCT 246
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120
| |||| |||| | |||||| ||| |||||| |||| || || |||||||||| |
Sbjct 245 CAGGAATCCTTAGCCAATCGGTGGAATGGATTCTCACCATTCTTTCGTTACTCATGCCGG 186
Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCAC--CACTGACACG 178
|||||||||| || ||||||| | | || |||||| ||||||| |||| |
Sbjct 185 CATTCTCACTTCCAAGCACTCCACGGCTCGGTTCCCCGGCCGCTTCACTGCACTTGGA-- 128
Query 179 ACGCTCCCCTACC---CAACCACACAG--GTTGCCAC--------AGCTTCGGCGGATAA 225
|||||| |||||| | | || | || ||| |||||||| | |
Sbjct 127 ACGCTCTCCTACCGCGTGATCGGACCGTAGTCCTCACACACCCGTAGCTTCGGTGACTTG 68
Query 226 CTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCT 285
||| ||||||| ||||||||| |||| | ||||||||||||||||| |||||||||||
Sbjct 67 CTTGAGCCCCGTTACATTATCCGCGCCCGAACACTTGACCAGTGAGCTGTTACGCACTCT 8
Query 286 TTCAAGG 292
|||||||
Sbjct 7 TTCAAGG 1
>seq212791
Length=233936
Score = 167 bits (184), Expect = 5e-39
Identities = 153/192 (80%), Gaps = 6/192 (3%)
Strand=Plus/Minus
Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268
||||||| | || |||| ||||| | |||||| |||| || ||| || |||||||
Sbjct 195964 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 195908
Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328
|||||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct 195907 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 195848
Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388
| ||| |||||| ||||| ||| | ||||||| ||||||| | ||||||||||
Sbjct 195847 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 195788
Query 389 GTTTCCCTCTCG 400
||||||||||||
Sbjct 195787 GTTTCCCTCTCG 195776
>seq213222
Length=619
Score = 113 bits (124), Expect = 1e-22
Identities = 89/107 (83%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353
|||||||||| ||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 619 TGGCTGCTTCTAAGCCAACCTCCTGGTTGTCTTGGCCTTCCCACATCCTTTCCCACTTAG 560
Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|| |||| ||| ||||||||| | |||||||| || ||||||||
Sbjct 559 CCATAACTTGGGGACCTTAGCTGGCGGTCTGGGCTCTTCCCCTCTCG 513
>seq218687
Length=770
Score = 87.8 bits (96), Expect = 4e-15
Identities = 100/132 (76%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAAC-TTGAC 59
||||||||||| |||||||||||||||| ||||||||||| | || || ||| |||
Sbjct 476 CGACTACGCCTTTCGGCCTCGCCTTAGGGTCCGACTCACCCTGCGCCGATGAACGTTGCG 535
Query 60 CCTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCG-TCACACGCTACTCATGCC 118
| |||| |||||| |||||| |||| || |||||| | || |||||||| |
Sbjct 536 CAAGGAAACCTTGGGCTTTCGGCGAGCGGGCTTTTCACCCGCTTGATCGTTACTCATGTC 595
Query 119 TGCATTCTCACT 130
|||||| ||||
Sbjct 596 AGCATTCGCACT 607
>seq125016
Length=700
Score = 73.4 bits (80), Expect = 9e-11
Identities = 54/63 (86%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318
|| ||||||||| |||||| || |||| ||||||||||||||||||||| ||||| ||
Sbjct 441 CTAGACCAGTGAACTATTAAGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCTTG 382
Query 319 GTT 321
|||
Sbjct 381 GTT 379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1174791565312
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