Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq198914 250 6e-64 seq206697 233 4e-59 seq163170 226 7e-57 seq193326 214 4e-53 seq164654 179 9e-43 seq172238 178 3e-42 seq212791 167 5e-39 seq213222 113 1e-22 seq218687 87.8 4e-15 seq125016 73.4 9e-11 >seq198914 Length=2821 Score = 250 bits (276), Expect = 6e-64 Identities = 308/412 (75%), Gaps = 22/412 (5%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| ||||||| |||| ||| ||| | | | || Sbjct 550 CGACTACGCCTTTCGGCCTCGCCTTAGGTCCCGACTTACCCTGGGAGGACGAGCCTTCCC 609 Query 61 CTGGAACCCTT-GGATAATCGGCGGACGGGATTCCCACC-CGTCACACGCTACTCATGCC 118 | ||||||||| || | | ||||| |||||| |||| | | ||||||||||||| Sbjct 610 CAGGAACCCTTAGGCTTA-CGGCGAGGTGGATTCTCACCACCTTTATCGCTACTCATGCC 668 Query 119 TGCATTCTCACT-CGCA----TCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTG 173 ||||||||||| | || || | || || || || |||| |||| ||| || Sbjct 669 AGCATTCTCACTTCTCAATAGTCCAGGCCTCCTTACGGTAACCCTTCAGC----CCATTG 724 Query 174 ACACGACGCTCCCCTACCCAACCACACAGGTTGCCAC----AGCTTCGGCGGATAACTTA 229 | | ||||||||||||| | | | | | || ||||||||| ||| Sbjct 725 AGA--ACGCTCCCCTACCGCTGTATAAA---TACAACCCGTAGCTTCGGCACCGGGCTTG 779 Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTT-GACCAGTGAGCTATTACGCACTCTTTC 288 ||||||| | |||| |||||||| | || | | |||||||| || ||||||||||||| Sbjct 780 AGCCCCGATTCATTTTCGGCGCGAAGTCGCATCGACCAGTGGGCAGTTACGCACTCTTTA 839 Query 289 AAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCA 348 |||| |||||||||| ||||| ||||||||| |||||| || ||| |||||||||| ||| Sbjct 840 AAGGGTGGCTGCTTCTAAGCCTACCTCCTGGCTGTCTATGCGACTTCACATCCTTTACCA 899 Query 349 CTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || | | || |||||||||||||| |||||||| ||||||||||||| Sbjct 900 CTTAGCCCGAATTTTGGGGCCTTAGCTGACGATCTGGGGTGTTTCCCTCTCG 951 >seq206697 Length=2363 Score = 233 bits (258), Expect = 4e-59 Identities = 304/413 (74%), Gaps = 22/413 (5%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||||||||||||||||||||||| ||| ||||||| | || || ||| | | Sbjct 348 CGACTACGCCTGTCGGCCTCGCCTTAGGGACCGGCTCACCCTGCGCGGATTAACCTTGCG 407 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGAT-TCCCACCCGTCACA---CGCTACTCATG 116 | |||||||||||| |||||| |||| || | | | || | ||||||||||| Sbjct 408 CAGGAACCCTTGGACTTACGGCGG---GGATGTCTCTCACATCCCTTTTCGCTACTCATG 464 Query 117 CCTGCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGAC 175 | |||||| |||| | ||| | ||||| |||| |||| || |||| | | Sbjct 465 TCAGCATTCGCACTTCCCAT-ACCTCCAGGACACC-TCACGATGCCCCTTCGCAGGTTTA 522 Query 176 ACGA-CGCTCCCCTAC-------CCAACCACACAGGTTGCCACAGCTTCGGCGGATAACT 227 || |||||| |||| | | |||| |||||||||||| | || || Sbjct 523 GGGAACGCTCCGCTACTGCGTGCCTTGCGGCACAC----CCACAGCTTCGGTGTATGGCT 578 Query 228 TAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTT 287 | ||||||| |||||| ||||||| | || ||||||||||||||||||||||| ||||| Sbjct 579 TGAGCCCCGTTACATTTTCGGCGCAGGATAACTTGACCAGTGAGCTATTACGCTTTCTTT 638 Query 288 CAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCC 347 || | |||||||||| |||||||| ||||||||||| | |||||||||||||| Sbjct 639 AAAAGGTGGCTGCTTCTAAGCCAACTTCCTGGTTGTCAGTGTCGTCCCACATCCTTTCCC 698 Query 348 ACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||| || || |||||||| ||||||||| | |||||||| || |||||||| Sbjct 699 ACTTAGCCATAACTTAGGGACCTTAGCTGGCGGTCTGGGCTCTTCCCCTCTCG 751 >seq163170 Length=29127 Score = 226 bits (250), Expect = 7e-57 Identities = 302/409 (74%), Gaps = 18/409 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 22858 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 22917 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||||| | |||| | | |||||| |||| | || |||||| ||| Sbjct 22918 GAGGAACCCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 22977 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || |||||| | | || | ||| |||| || || | | Sbjct 22978 ACATTCTCGCTTCCGCTTCG--TCCACCGC-CGCTCGCGCGGTTGCTTTCCC-CTAAGGC 23033 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 23034 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 23089 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 23090 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 23148 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||| Sbjct 23149 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 23208 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 23209 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 23257 >seq193326 Length=1315 Score = 214 bits (236), Expect = 4e-53 Identities = 307/420 (73%), Gaps = 27/420 (6%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| |||||| |||| | || ||| ||| | | Sbjct 940 CGACTACGCCTTTCGGCCTCGCCTTAGGGACCGACTAACCCTGAGCGGACGAACCTTCCT 881 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 | |||| |||| || |||||| || | ||| ||| || | ||||||| |||| Sbjct 880 CAGGAAACCTTAGACTTTCGGCGAGCGTGGTTCTCACACGCTTTATCGCTACTTGTGCCG 821 Query 120 GCATTCTCACT-CGCATCAACTCCACCACA-CAGTCACCCGGCAGCTTCACCAC--TGAC 175 ||| || || | || || ||||||| | || | | ||||||| | ||| Sbjct 820 GCAGAGTCTCTTCTCAACAG-TCCACCAGTTCTTTCGATCTGA--CTTCACCCCGTTGAG 764 Query 176 ACGACGCTCCCCTACC--CAACCAC------ACAGG---TTG--CCACAGCTTCGGCGGA 222 | | |||| |||||| |||| || | | | ||| || ||||||||| | Sbjct 763 A--ATGCTCTCCTACCACCAACGACTTCCGAAGAAGCCATTGATCCGCAGCTTCGGT--A 708 Query 223 TAAC--TTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGC 280 | || || ||||||| |||||| ||||| |||| |||||||||||||||||||||||| Sbjct 707 TCACGCTTGAGCCCCGTTACATTGTCGGCACGGAGCCACTTGACCAGTGAGCTATTACGC 648 Query 281 ACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATC 340 ||||| ||||||||||||||| ||||||||||||||| ||||| || ||||||||| Sbjct 647 TTTCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTGGCTGTCTGTGCGTCTCCACATC 588 Query 341 CTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 |||||||||| || | || ||| ||||||||| | |||||| |||| |||||||| Sbjct 587 CTTTCCCACTTAGCGTGAATTTTGGGACCTTAGCTGGCGGTCTGGGTTGTTCCCCTCTCG 528 >seq164654 Length=1436 Score = 179 bits (198), Expect = 9e-43 Identities = 295/418 (71%), Gaps = 28/418 (7%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| |||||| |||| | ||||| ||||| || Sbjct 261 CGACTACGCCTCTCGGCCTCGCCTTAGGTACCGACTAACCCTGAGCAGATTAACTTTACT 320 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 | |||| |||| | | ||||| |||| || |||||| | ||||||| ||||| Sbjct 321 CAGGAAACCTTAGGTTTACGGCGCGCGGGGATCTCACCCGCGTTATCGCTACTTATGCCG 380 Query 120 GCAT--TCT----CACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTG 173 || ||| | |||| |||| | || | || ||| ||||||| || Sbjct 381 ACAGAGTCTTTTCCGATCGCTCCAACGGC-CCTTTCGGT-ACC-----GCTTCACAGCT- 432 Query 174 ACACGACGCTCCCCTACCCAACCACACAGGTTGCCACAGC-----------TTCGGCGGA 222 || | |||| |||||| | || || |||| || || ||||| Sbjct 433 ACGGAATGCTCGCCTACC-ATCCGCAGTA-TTGCTACTGCGAATCCGAAACTTCGGTACG 490 Query 223 TAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCAC 282 | || ||||||| || ||| ||||||| | |||||||||||||||||||||| Sbjct 491 TCGTTTGAGCCCCGTTATATTGTCGGCGCAGGGCTGCTTGACCAGTGAGCTATTACGCTT 550 Query 283 TCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCT 342 ||||| ||||||||||||||| ||||||||||||||| ||||| || | | || |||| Sbjct 551 TCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTGGCTGTCTGTGCTTCCCTACTTCCT 610 Query 343 TTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || ||||| | ||| | || ||| |||||| || | |||||||||||||||||||| Sbjct 611 TTTCCACTTAACCACGATTTTGGGACCTTAGTTGTCGGTCTGGGCTGTTTCCCTCTCG 668 >seq172238 Length=423 Score = 178 bits (196), Expect = 3e-42 Identities = 225/307 (73%), Gaps = 17/307 (6%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| ||||||| |||| | || ||| ||| | | Sbjct 305 CGACTACGCCTTTCGGCCTCGCCTTAGGTCCCGACTAACCCTGAGCCGACGAACGTTGCT 246 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 | |||| |||| | |||||| ||| |||||| |||| || || |||||||||| | Sbjct 245 CAGGAATCCTTAGCCAATCGGTGGAATGGATTCTCACCATTCTTTCGTTACTCATGCCGG 186 Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCAC--CACTGACACG 178 |||||||||| || ||||||| | | || |||||| ||||||| |||| | Sbjct 185 CATTCTCACTTCCAAGCACTCCACGGCTCGGTTCCCCGGCCGCTTCACTGCACTTGGA-- 128 Query 179 ACGCTCCCCTACC---CAACCACACAG--GTTGCCAC--------AGCTTCGGCGGATAA 225 |||||| |||||| | | || | || ||| |||||||| | | Sbjct 127 ACGCTCTCCTACCGCGTGATCGGACCGTAGTCCTCACACACCCGTAGCTTCGGTGACTTG 68 Query 226 CTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCT 285 ||| ||||||| ||||||||| |||| | ||||||||||||||||| ||||||||||| Sbjct 67 CTTGAGCCCCGTTACATTATCCGCGCCCGAACACTTGACCAGTGAGCTGTTACGCACTCT 8 Query 286 TTCAAGG 292 ||||||| Sbjct 7 TTCAAGG 1 >seq212791 Length=233936 Score = 167 bits (184), Expect = 5e-39 Identities = 153/192 (80%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | |||||| |||| || ||| || ||||||| Sbjct 195964 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 195908 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 195907 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 195848 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 195847 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 195788 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 195787 GTTTCCCTCTCG 195776 >seq213222 Length=619 Score = 113 bits (124), Expect = 1e-22 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 |||||||||| ||||||||||||||||||||| || ||||||||||||||||| || Sbjct 619 TGGCTGCTTCTAAGCCAACCTCCTGGTTGTCTTGGCCTTCCCACATCCTTTCCCACTTAG 560 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || |||| ||| ||||||||| | |||||||| || |||||||| Sbjct 559 CCATAACTTGGGGACCTTAGCTGGCGGTCTGGGCTCTTCCCCTCTCG 513 >seq218687 Length=770 Score = 87.8 bits (96), Expect = 4e-15 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAAC-TTGAC 59 ||||||||||| |||||||||||||||| ||||||||||| | || || ||| ||| Sbjct 476 CGACTACGCCTTTCGGCCTCGCCTTAGGGTCCGACTCACCCTGCGCCGATGAACGTTGCG 535 Query 60 CCTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCG-TCACACGCTACTCATGCC 118 | |||| |||||| |||||| |||| || |||||| | || |||||||| | Sbjct 536 CAAGGAAACCTTGGGCTTTCGGCGAGCGGGCTTTTCACCCGCTTGATCGTTACTCATGTC 595 Query 119 TGCATTCTCACT 130 |||||| |||| Sbjct 596 AGCATTCGCACT 607 >seq125016 Length=700 Score = 73.4 bits (80), Expect = 9e-11 Identities = 54/63 (86%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 || ||||||||| |||||| || |||| ||||||||||||||||||||| ||||| || Sbjct 441 CTAGACCAGTGAACTATTAAGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCTTG 382 Query 319 GTT 321 ||| Sbjct 381 GTT 379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1174791565312