Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq198914 129 5e-28 seq212791 123 2e-26 seq163170 122 7e-26 seq189298 95.1 1e-17 >seq198914 Length=2821 Score = 129 bits (142), Expect = 5e-28 Identities = 115/143 (80%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTC-TGGGATTAGCTCCCCCTCGCG 60 |||||||||| |||||||||| ||| || ||||| ||||||| ||||| |||| || Sbjct 2679 CGAGTTGCAGCCTACAATCCGAACTGAGACTGACTTTGATGGGATTGGCTCCGCCTCACG 2738 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | || || |||| ||||| |||||||| ||||||| |||||| ||||||||||| Sbjct 2739 GTTTTGCAACCCTTTGTATCGGCCATTGTAGCACGTGTGTAGCCCTGGACATAAGGGCCA 2798 Query 121 TGAGGACTTGACGTCATCCCCAC 143 ||| ||||||||||| ||||||| Sbjct 2799 TGATGACTTGACGTCGTCCCCAC 2821 >seq212791 Length=233936 Score = 123 bits (136), Expect = 2e-26 Identities = 124/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 166432 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 166374 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 166373 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 166314 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 166313 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 166274 >seq163170 Length=29127 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 26903 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 26962 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 26963 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 27022 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 27023 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 27062 >seq189298 Length=944 Score = 95.1 bits (104), Expect = 1e-17 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||| ||| |||||||||| ||| | ||| ||| ||| ||| |||| ||| Sbjct 255 CGAGTTACAGTCTACAATCCGAACTGAGGACGGGTTTTTGGAGTTACCTCACCCTTACGG 314 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | || |||| ||| | |||||||| ||||||| |||| |||||||| ||| Sbjct 315 GATCACGACCCTTTGTCTCGGCCATTGTAGCACGTGTGTCGCCCAGTGCATAAGGGGCAT 374 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | ||||||||||||||| |||||||||| | || |||| Sbjct 375 AATGACTTGACGTCATCCTCACCTTCCTCTAGCTTATCAC 414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415038893360