Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= AAMG01001821.1
Length=161
Score E
Sequences producing significant alignments: (Bits) Value
seq198914 129 5e-28
seq212791 123 2e-26
seq163170 122 7e-26
seq189298 95.1 1e-17
>seq198914
Length=2821
Score = 129 bits (142), Expect = 5e-28
Identities = 115/143 (80%), Gaps = 1/143 (1%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTC-TGGGATTAGCTCCCCCTCGCG 60
|||||||||| |||||||||| ||| || ||||| ||||||| ||||| |||| ||
Sbjct 2679 CGAGTTGCAGCCTACAATCCGAACTGAGACTGACTTTGATGGGATTGGCTCCGCCTCACG 2738
Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120
| || || |||| ||||| |||||||| ||||||| |||||| |||||||||||
Sbjct 2739 GTTTTGCAACCCTTTGTATCGGCCATTGTAGCACGTGTGTAGCCCTGGACATAAGGGCCA 2798
Query 121 TGAGGACTTGACGTCATCCCCAC 143
||| ||||||||||| |||||||
Sbjct 2799 TGATGACTTGACGTCGTCCCCAC 2821
>seq212791
Length=233936
Score = 123 bits (136), Expect = 2e-26
Identities = 124/160 (78%), Gaps = 1/160 (1%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | |
Sbjct 166432 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 166374
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| || ||| |||| | |||||||| ||||||| |||| ||||||||||||||
Sbjct 166373 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 166314
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
| |||||||||||||||||||||||||||| || | ||||
Sbjct 166313 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 166274
>seq163170
Length=29127
Score = 122 bits (134), Expect = 7e-26
Identities = 123/160 (77%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| ||| ||||||| |||||||||
Sbjct 26903 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 26962
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 26963 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 27022
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||||||| || ||||
Sbjct 27023 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 27062
>seq189298
Length=944
Score = 95.1 bits (104), Expect = 1e-17
Identities = 117/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||| ||| |||||||||| ||| | ||| ||| ||| ||| |||| |||
Sbjct 255 CGAGTTACAGTCTACAATCCGAACTGAGGACGGGTTTTTGGAGTTACCTCACCCTTACGG 314
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | || |||| ||| | |||||||| ||||||| |||| |||||||| |||
Sbjct 315 GATCACGACCCTTTGTCTCGGCCATTGTAGCACGTGTGTCGCCCAGTGCATAAGGGGCAT 374
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
| ||||||||||||||| |||||||||| | || ||||
Sbjct 375 AATGACTTGACGTCATCCTCACCTTCCTCTAGCTTATCAC 414
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 415038893360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |