Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= AAMG01001844.1
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
seq211067 223 6e-56
seq163170 163 5e-38
seq216307 149 1e-33
seq212791 140 5e-31
>seq211067
Length=575
Score = 223 bits (246), Expect = 6e-56
Identities = 216/278 (78%), Gaps = 0/278 (0%)
Strand=Plus/Minus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
||||||||||||||||| ||||||||| | |||||| | |||||||||| || ||| |
Sbjct 439 CCCACGCTTTCGCGCCTGAGCGTCAGTCATCGTCCAGAAGGCCGCCTTCGCTACCGGTAT 380
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|||||| |||||||| |||||||| |||||| ||||||| | | ||||||| ||
Sbjct 379 TCCTCCCAGTATCTACGGATTTCACCCCTACACTGGGAATTCTGCCTTCCTCTCCGAGAC 320
Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180
|| || | |||||| ||| ||||| ||||| | ||||||| | ||||
Sbjct 319 TCTAGCGAGGTAGTTTCGGTCGCATTTCCCGGGTTAAGCCCGGGGATTTCACAACCGACT 260
Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240
|||| |||||||||||| |||||| |||| ||| |||| | ||||||||| ||| ||
Sbjct 259 TGCCAAGCCGCCTACACGCGCTTTACGCCCAGTAATTCCGAACAACGCTTGCACCCTCCG 200
Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 278
|||||||||||||||||||||| ||||||||| ||||
Sbjct 199 TATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTT 162
>seq163170
Length=29127
Score = 163 bits (180), Expect = 5e-38
Identities = 207/285 (73%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
||||||| ||||| |||||| | | |||||| || |||||| |||||||| |
Sbjct 27456 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 27515
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
| || |||||||||||||||||| ||| | |||||| |||| || | | |||| ||
Sbjct 27516 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 27575
Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185
|||||| | || | ||||||||||| | ||| || | |||||
Sbjct 27576 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 27635
Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245
|| |||||| | |||||| |||||| | |||||||||||||||| ||| ||||||
Sbjct 27636 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 27695
Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||| ||||||||| ||||||||| ||| ||
Sbjct 27696 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 27740
>seq216307
Length=286
Score = 149 bits (164), Expect = 1e-33
Identities = 139/177 (79%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 106 TTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAG 165
|| ||||||| | ||||||| | |||| ||||||||| |||||||||| |
Sbjct 286 TTCCCTCTCCCGGACTCAAGCTACGCAGTCTCAAATGCAATTCCCAGGTTGAGCCCGGGG 227
Query 166 TTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAA 225
||||||||||||||| | |||||||| | | |||||| |||| ||| |||| |||
Sbjct 226 CTTTCACATCTGACTTACAAAACCGCCTACGCACGCTTTACGCCCAGTAATTCCGATTAA 167
Query 226 CGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282
||||||| ||| |||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 166 CGCTTGCACCCTTCGTATTACCGCGGCTGCTGGCACGAAGTTAGCCGGTGCTTATTC 110
>seq212791
Length=233936
Score = 140 bits (154), Expect = 5e-31
Identities = 205/288 (71%), Gaps = 8/288 (3%)
Strand=Plus/Minus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
|||| |||||||| | ||||||| || |||| | | |||||||| ||| ||
Sbjct 165518 CCCATGCTTTCGCACTCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 165459
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|||| |||| |||| || |||||||| ||||||||| |||||| | ||||| |||
Sbjct 165458 TCCTTCGTAGATCTCCGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCAC 165399
Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATCTG 177
||||| || ||||| | ||| || | | || | | | |||||| |
Sbjct 165398 TCAAGTGAATTGGTTTCGAGAGCATTCCGCCA--GTTTTTGGCGAC---TTTCACTTTCA 165344
Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237
|| | | |||||||| ||||||||| |||| | | |||| | ||| |||||| ||
Sbjct 165343 ACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCC 165284
Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285
||| |||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct 165283 CCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 165236
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 826885179848
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |