Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq211067 223 6e-56 seq163170 163 5e-38 seq216307 149 1e-33 seq212791 140 5e-31 >seq211067 Length=575 Score = 223 bits (246), Expect = 6e-56 Identities = 216/278 (78%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||||||| ||||||||| | |||||| | |||||||||| || ||| | Sbjct 439 CCCACGCTTTCGCGCCTGAGCGTCAGTCATCGTCCAGAAGGCCGCCTTCGCTACCGGTAT 380 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| |||||||| |||||||| |||||| ||||||| | | ||||||| || Sbjct 379 TCCTCCCAGTATCTACGGATTTCACCCCTACACTGGGAATTCTGCCTTCCTCTCCGAGAC 320 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || | |||||| ||| ||||| ||||| | ||||||| | |||| Sbjct 319 TCTAGCGAGGTAGTTTCGGTCGCATTTCCCGGGTTAAGCCCGGGGATTTCACAACCGACT 260 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 |||| |||||||||||| |||||| |||| ||| |||| | ||||||||| ||| || Sbjct 259 TGCCAAGCCGCCTACACGCGCTTTACGCCCAGTAATTCCGAACAACGCTTGCACCCTCCG 200 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 278 |||||||||||||||||||||| ||||||||| |||| Sbjct 199 TATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTT 162 >seq163170 Length=29127 Score = 163 bits (180), Expect = 5e-38 Identities = 207/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 27456 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 27515 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 27516 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 27575 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | ||||| Sbjct 27576 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 27635 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||| Sbjct 27636 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 27695 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 27696 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 27740 >seq216307 Length=286 Score = 149 bits (164), Expect = 1e-33 Identities = 139/177 (79%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 106 TTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAG 165 || ||||||| | ||||||| | |||| ||||||||| |||||||||| | Sbjct 286 TTCCCTCTCCCGGACTCAAGCTACGCAGTCTCAAATGCAATTCCCAGGTTGAGCCCGGGG 227 Query 166 TTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAA 225 ||||||||||||||| | |||||||| | | |||||| |||| ||| |||| ||| Sbjct 226 CTTTCACATCTGACTTACAAAACCGCCTACGCACGCTTTACGCCCAGTAATTCCGATTAA 167 Query 226 CGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 ||||||| ||| |||||||||||||||||||||||| ||||||||| |||||||| Sbjct 166 CGCTTGCACCCTTCGTATTACCGCGGCTGCTGGCACGAAGTTAGCCGGTGCTTATTC 110 >seq212791 Length=233936 Score = 140 bits (154), Expect = 5e-31 Identities = 205/288 (71%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| | ||||||| || |||| | | |||||||| ||| || Sbjct 165518 CCCATGCTTTCGCACTCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 165459 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| |||| || |||||||| ||||||||| |||||| | ||||| ||| Sbjct 165458 TCCTTCGTAGATCTCCGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCAC 165399 Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATCTG 177 ||||| || ||||| | ||| || | | || | | | |||||| | Sbjct 165398 TCAAGTGAATTGGTTTCGAGAGCATTCCGCCA--GTTTTTGGCGAC---TTTCACTTTCA 165344 Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237 || | | |||||||| ||||||||| |||| | | |||| | ||| |||||| || Sbjct 165343 ACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCC 165284 Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||| |||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 165283 CCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 165236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 826885179848