Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= AAMG01001851.1
Length=140
Score E
Sequences producing significant alignments: (Bits) Value
seq203717 140 2e-31
seq205930 129 4e-28
seq174641 127 1e-27
seq162856 109 4e-22
seq163170 87.8 1e-15
>seq203717
Length=542
Score = 140 bits (154), Expect = 2e-31
Identities = 101/117 (86%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 2 ACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGC 61
|||||||||||||||||||||||||||||||| || | |||||||||||||| | |||||
Sbjct 1 ACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGGCCTGC 60
Query 62 TTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
||||||| |||||| | |||| | ||||||| | |||| | ||| |||| |||||||
Sbjct 61 TTTCGCACCTGCTCGACTTGTAGGTCTCGCAGTTAAGCTCCCTTCTGCCTTTGCACT 117
>seq205930
Length=511
Score = 129 bits (142), Expect = 4e-28
Identities = 114/139 (82%), Gaps = 4/139 (3%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|||||||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct 83 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGAACCACCGGATCACTATGACCGA 142
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119
|||||| ||||||| | |||| ||||||| ||| || ||| |||||||||||| |
Sbjct 143 CTTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCA 202
Query 120 TCA-CTACGATTTCCGACC 137
|| || |||||||||||
Sbjct 203 ACAGCT--GATTTCCGACC 219
>seq174641
Length=359
Score = 127 bits (140), Expect = 1e-27
Identities = 99/118 (84%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
||||||||||||||||||||||||||||||||| | | |||||||||||||| ||||
Sbjct 167 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTAAGACCGA 226
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||| |||||| | |||| | |||| || |||||| ||||| |||| |||||||
Sbjct 227 CTTTCGTCCCTGCTCGACTTGTAGGTCTCACAGTCAAGCCCACTTATGCCTTTGCACT 284
>seq162856
Length=764
Score = 109 bits (120), Expect = 4e-22
Identities = 95/118 (81%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
||||||||||||||||||||| ||||||||||| || | || ||||||||||| | |||
Sbjct 86 TACCTTTTATCCGTTGAGCGACGGCCCTTCCATACAGAACCGCCGGATCACTAAGTCCTA 145
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||| | |||||| | ||||| |||| || |||||| ||| ||| || ||||
Sbjct 146 CTTTCGTACCTGCTCGACTTGTTTGTCTCACAGTCAAGCTGGCTTATGCGTTTACACT 203
>seq163170
Length=29127
Score = 87.8 bits (96), Expect = 1e-15
Identities = 90/118 (76%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|| |||||||||||||||||| |||||||||| || || |||||||||| | ||
Sbjct 21800 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGA 21859
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||| |||||| | || | ||| ||| |||||| | ||| |||| |||||||
Sbjct 21860 CTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 21917
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 351212989600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |