Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq203717 140 2e-31 seq205930 129 4e-28 seq174641 127 1e-27 seq162856 109 4e-22 seq163170 87.8 1e-15 >seq203717 Length=542 Score = 140 bits (154), Expect = 2e-31 Identities = 101/117 (86%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 2 ACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGC 61 |||||||||||||||||||||||||||||||| || | |||||||||||||| | ||||| Sbjct 1 ACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGGCCTGC 60 Query 62 TTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 ||||||| |||||| | |||| | ||||||| | |||| | ||| |||| ||||||| Sbjct 61 TTTCGCACCTGCTCGACTTGTAGGTCTCGCAGTTAAGCTCCCTTCTGCCTTTGCACT 117 >seq205930 Length=511 Score = 129 bits (142), Expect = 4e-28 Identities = 114/139 (82%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | | ||||||||||||||||||| Sbjct 83 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGAACCACCGGATCACTATGACCGA 142 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| ||||||| | |||| ||||||| ||| || ||| |||||||||||| | Sbjct 143 CTTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCA 202 Query 120 TCA-CTACGATTTCCGACC 137 || || ||||||||||| Sbjct 203 ACAGCT--GATTTCCGACC 219 >seq174641 Length=359 Score = 127 bits (140), Expect = 1e-27 Identities = 99/118 (84%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| | | |||||||||||||| |||| Sbjct 167 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTAAGACCGA 226 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||||| | |||| | |||| || |||||| ||||| |||| ||||||| Sbjct 227 CTTTCGTCCCTGCTCGACTTGTAGGTCTCACAGTCAAGCCCACTTATGCCTTTGCACT 284 >seq162856 Length=764 Score = 109 bits (120), Expect = 4e-22 Identities = 95/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||| ||||||||||| || | || ||||||||||| | ||| Sbjct 86 TACCTTTTATCCGTTGAGCGACGGCCCTTCCATACAGAACCGCCGGATCACTAAGTCCTA 145 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| | |||||| | ||||| |||| || |||||| ||| ||| || |||| Sbjct 146 CTTTCGTACCTGCTCGACTTGTTTGTCTCACAGTCAAGCTGGCTTATGCGTTTACACT 203 >seq163170 Length=29127 Score = 87.8 bits (96), Expect = 1e-15 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| |||||||||| || || |||||||||| | || Sbjct 21800 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGA 21859 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||||| | || | ||| ||| |||||| | ||| |||| ||||||| Sbjct 21860 CTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 21917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351212989600