Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq205930 138 1e-30 seq203717 123 2e-26 seq174641 114 1e-23 seq162856 111 1e-22 seq212791 75.2 1e-11 >seq205930 Length=511 Score = 138 bits (152), Expect = 1e-30 Identities = 124/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | |||||||||||||||||||||| |||||| ||| Sbjct 95 GTTGAGCGATGGCCCTTCCACGCGGAACCACCGGATCACTATGACCGACTTTCGTCTCTG 154 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| |||| ||||||||||| || ||||||||||||||||| | | ||| || Sbjct 155 CTCGACTTGTCAGTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCAACAGCTGATTTC 214 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||| | ||| ||| ||| || ||||||||| Sbjct 215 CGACCAGCCTGAGCCCACCATCGCGCGCCTCCGTTA 250 >seq203717 Length=542 Score = 123 bits (136), Expect = 2e-26 Identities = 91/106 (86%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||| Sbjct 12 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGGCCTGCTTTCGCACCTG 71 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||||| || ||||||||| |||| ||| |||| ||||||| Sbjct 72 CTCGACTTGTAGGTCTCGCAGTTAAGCTCCCTTCTGCCTTTGCACT 117 >seq174641 Length=359 Score = 114 bits (126), Expect = 1e-23 Identities = 89/106 (84%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| | ||||||||||||||||| |||| |||||| |||| Sbjct 179 GTTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTAAGACCGACTTTCGTCCCTG 238 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||||| || |||| |||||||||| |||||||| ||||||| Sbjct 239 CTCGACTTGTAGGTCTCACAGTCAAGCCCACTTATGCCTTTGCACT 284 >seq162856 Length=764 Score = 111 bits (122), Expect = 1e-22 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||||||||||| ||||||| ||||||||||| | ||| |||||| ||||| Sbjct 98 GTTGAGCGACGGCCCTTCCATACAGAACCGCCGGATCACTAAGTCCTACTTTCGTACCTG 157 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| || |||| ||||||||| |||||||| || |||| | ||| || Sbjct 158 CTCGACTTGTTTGTCTCACAGTCAAGCTGGCTTATGCGTTTACACTCTACGGCTGATTTC 217 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | | | | ||| ||||||| || ||||||||| Sbjct 218 CAAACAGCCTGAGCCAACCTTCGAGCGCCTCCGTTA 253 >seq212791 Length=233936 Score = 75.2 bits (82), Expect = 1e-11 Identities = 82/109 (75%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||||||||| | | || ||||||||||||| || |||||| ||| Sbjct 197349 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 197290 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132 |||| | ||| |||| |||||| || |||||| ||||| | || || Sbjct 197289 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 197241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472505817056