Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= AAMG01001946.1
Length=179
Score E
Sequences producing significant alignments: (Bits) Value
seq205930 138 1e-30
seq203717 123 2e-26
seq174641 114 1e-23
seq162856 111 1e-22
seq212791 75.2 1e-11
>seq205930
Length=511
Score = 138 bits (152), Expect = 1e-30
Identities = 124/156 (79%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
|||||||||||||||||||| | |||||||||||||||||||||| |||||| |||
Sbjct 95 GTTGAGCGATGGCCCTTCCACGCGGAACCACCGGATCACTATGACCGACTTTCGTCTCTG 154
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
||||| |||| ||||||||||| || ||||||||||||||||| | | ||| ||
Sbjct 155 CTCGACTTGTCAGTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCAACAGCTGATTTC 214
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
||||| | ||| ||| ||| || |||||||||
Sbjct 215 CGACCAGCCTGAGCCCACCATCGCGCGCCTCCGTTA 250
>seq203717
Length=542
Score = 123 bits (136), Expect = 2e-26
Identities = 91/106 (86%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||
Sbjct 12 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGGCCTGCTTTCGCACCTG 71
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129
||||| || ||||||||| |||| ||| |||| |||||||
Sbjct 72 CTCGACTTGTAGGTCTCGCAGTTAAGCTCCCTTCTGCCTTTGCACT 117
>seq174641
Length=359
Score = 114 bits (126), Expect = 1e-23
Identities = 89/106 (84%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||||||||||||||| | ||||||||||||||||| |||| |||||| ||||
Sbjct 179 GTTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTAAGACCGACTTTCGTCCCTG 238
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129
||||| || |||| |||||||||| |||||||| |||||||
Sbjct 239 CTCGACTTGTAGGTCTCACAGTCAAGCCCACTTATGCCTTTGCACT 284
>seq162856
Length=764
Score = 111 bits (122), Expect = 1e-22
Identities = 118/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||||||||||| ||||||| ||||||||||| | ||| |||||| |||||
Sbjct 98 GTTGAGCGACGGCCCTTCCATACAGAACCGCCGGATCACTAAGTCCTACTTTCGTACCTG 157
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
||||| || |||| ||||||||| |||||||| || |||| | ||| ||
Sbjct 158 CTCGACTTGTTTGTCTCACAGTCAAGCTGGCTTATGCGTTTACACTCTACGGCTGATTTC 217
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
| | | | ||| ||||||| || |||||||||
Sbjct 218 CAAACAGCCTGAGCCAACCTTCGAGCGCCTCCGTTA 253
>seq212791
Length=233936
Score = 75.2 bits (82), Expect = 1e-11
Identities = 82/109 (75%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 197349 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 197290
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132
|||| | ||| |||| |||||| || |||||| ||||| | || ||
Sbjct 197289 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 197241
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472505817056
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |