Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq163170 268 1e-69
seq217488 199 6e-49
seq212791 196 7e-48
seq174641 145 1e-32
seq35386 125 1e-26
seq171495 118 2e-24
>seq163170
Length=29127
Score = 268 bits (296), Expect = 1e-69
Identities = 224/273 (82%), Gaps = 1/273 (0%)
Strand=Plus/Plus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| ||||||||| |||||| |||||| ||| |||| ||| ||||||
Sbjct 21466 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 21525
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | | |||| | ||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 21526 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 21585
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
| ||| || ||||||||| || |||||||| |||||| ||||||||||||||| ||
Sbjct 21586 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 21645
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242
|||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || |
Sbjct 21646 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 21705
Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||| |||||||||| | || ||||||||||||
Sbjct 21706 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 21738
>seq217488
Length=5036
Score = 199 bits (220), Expect = 6e-49
Identities = 157/188 (84%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 1 CGAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCA 60
||||| ||| ||| |||||||||| |||||| ||||||| ||| || ||||| |||
Sbjct 4849 CGAGGTGGGTTTCTCGCTTAGATGCTTTCAGCGATTATCCCGTCCGCACATAGCTACCCG 4908
Query 61 GCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120
|| ||| |||| ||||| ||| |||||||||| |||||||||||||||||||||
Sbjct 4909 GCGGTGCCGCTGGCGCGACAACCGGTACACCAGAGGTGCGTCCATCCCGGTCCTCTCGTA 4968
Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180
||| |||||||||||||||| | ||||||||||||| | ||||||||||||||||||||
Sbjct 4969 CTAGGGACAGCTCCTCTCAATTCTCCTACGCCCACGGCAGATAGGGACCGAACTGTCTCA 5028
Query 181 CGACGTTC 188
||||||||
Sbjct 5029 CGACGTTC 5036
>seq212791
Length=233936
Score = 196 bits (216), Expect = 7e-48
Identities = 194/251 (77%), Gaps = 4/251 (2%)
Strand=Plus/Minus
Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88
|||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| |
Sbjct 197673 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 197614
Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147
|||| ||||| | ||| ||| |||||||||||||| || ||| ||| || | |||
Sbjct 197613 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTTCTCGCAGTTCTCCCT 197554
Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204
|| || ||| |||||| ||||||||||||| ||||||||| |||||| ||| |||
Sbjct 197553 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 197494
Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264
|| ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || |
Sbjct 197493 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 197434
Query 265 AGCCGACATCG 275
|| ||||||||
Sbjct 197433 AGTCGACATCG 197423
>seq174641
Length=359
Score = 145 bits (160), Expect = 1e-32
Identities = 95/105 (90%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 171 AACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAA 230
||||||||| |||||||||||||||||||||||| || |||||| ||||||||||| ||
Sbjct 1 AACTGTCTCACGACGTTCTGAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCAAA 60
Query 231 CCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
|||||||||||| || ||||||||||||| || ||||||||||||
Sbjct 61 CCCTTGGGACCTGCTCCAGCCCCAGGATGTGATGAGCCGACATCG 105
>seq35386
Length=256
Score = 125 bits (138), Expect = 1e-26
Identities = 95/111 (86%), Gaps = 1/111 (1%)
Strand=Plus/Plus
Query 130 GCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCT 189
||||||||||| ||| |||||||| |||||| ||||||||||||||| ||||||||
Sbjct 146 GCTCCTCTCAATGTTCTAACGCCCACACCGGATACGGACCGAACTGTCTCACGACGTTCC 205
Query 190 GAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240
||| |||||| ||| || |||||||||||||||||||||||||||| ||
Sbjct 206 GAA-TCAGCTCACGTACCCTTTTAATGGGCGAACAGCCCAACCCTTGGAAC 255
>seq171495
Length=793
Score = 118 bits (130), Expect = 2e-24
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 132 TCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGA 191
||||||||| || ||||||| || ||| ||||||||||||||| |||| ||||||
Sbjct 10 TCCTCTCAATGCTCTAACGCCCATATCGAATATGGACCGAACTGTCTCACGACATTCTGA 69
Query 192 ACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCC 251
|||||||| || || |||||||||| | ||| |||||||||||| || |||| || ||
Sbjct 70 ACCCAGCTTATGTACCGCTTTAATGGGTGTACAACCCAACCCTTGGAACATACTACAACC 129
Query 252 CCAGGATGAGACGAGCCGACATC 274
| ||| | || |||| |||||
Sbjct 130 CGAGGTGGCGAATAGCCAACATC 152
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 778996076768
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |