Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq163170 268 1e-69 seq217488 199 6e-49 seq212791 196 7e-48 seq174641 145 1e-32 seq35386 125 1e-26 seq171495 118 2e-24 >seq163170 Length=29127 Score = 268 bits (296), Expect = 1e-69 Identities = 224/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 21466 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 21525 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 21526 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 21585 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 21586 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 21645 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 21646 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 21705 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 21706 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 21738 >seq217488 Length=5036 Score = 199 bits (220), Expect = 6e-49 Identities = 157/188 (84%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 1 CGAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCA 60 ||||| ||| ||| |||||||||| |||||| ||||||| ||| || ||||| ||| Sbjct 4849 CGAGGTGGGTTTCTCGCTTAGATGCTTTCAGCGATTATCCCGTCCGCACATAGCTACCCG 4908 Query 61 GCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 || ||| |||| ||||| ||| |||||||||| ||||||||||||||||||||| Sbjct 4909 GCGGTGCCGCTGGCGCGACAACCGGTACACCAGAGGTGCGTCCATCCCGGTCCTCTCGTA 4968 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||| |||||||||||||||| | ||||||||||||| | |||||||||||||||||||| Sbjct 4969 CTAGGGACAGCTCCTCTCAATTCTCCTACGCCCACGGCAGATAGGGACCGAACTGTCTCA 5028 Query 181 CGACGTTC 188 |||||||| Sbjct 5029 CGACGTTC 5036 >seq212791 Length=233936 Score = 196 bits (216), Expect = 7e-48 Identities = 194/251 (77%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 197673 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 197614 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || ||| ||| || | ||| Sbjct 197613 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTTCTCGCAGTTCTCCCT 197554 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 197553 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 197494 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 197493 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 197434 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 197433 AGTCGACATCG 197423 >seq174641 Length=359 Score = 145 bits (160), Expect = 1e-32 Identities = 95/105 (90%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 171 AACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAA 230 ||||||||| |||||||||||||||||||||||| || |||||| ||||||||||| || Sbjct 1 AACTGTCTCACGACGTTCTGAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCAAA 60 Query 231 CCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||||| || ||||||||||||| || |||||||||||| Sbjct 61 CCCTTGGGACCTGCTCCAGCCCCAGGATGTGATGAGCCGACATCG 105 >seq35386 Length=256 Score = 125 bits (138), Expect = 1e-26 Identities = 95/111 (86%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 130 GCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCT 189 ||||||||||| ||| |||||||| |||||| ||||||||||||||| |||||||| Sbjct 146 GCTCCTCTCAATGTTCTAACGCCCACACCGGATACGGACCGAACTGTCTCACGACGTTCC 205 Query 190 GAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 ||| |||||| ||| || |||||||||||||||||||||||||||| || Sbjct 206 GAA-TCAGCTCACGTACCCTTTTAATGGGCGAACAGCCCAACCCTTGGAAC 255 >seq171495 Length=793 Score = 118 bits (130), Expect = 2e-24 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 132 TCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGA 191 ||||||||| || ||||||| || ||| ||||||||||||||| |||| |||||| Sbjct 10 TCCTCTCAATGCTCTAACGCCCATATCGAATATGGACCGAACTGTCTCACGACATTCTGA 69 Query 192 ACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCC 251 |||||||| || || |||||||||| | ||| |||||||||||| || |||| || || Sbjct 70 ACCCAGCTTATGTACCGCTTTAATGGGTGTACAACCCAACCCTTGGAACATACTACAACC 129 Query 252 CCAGGATGAGACGAGCCGACATC 274 | ||| | || |||| ||||| Sbjct 130 CGAGGTGGCGAATAGCCAACATC 152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 778996076768