Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq238195 394 2e-107
seq155949 302 1e-79
seq163170 266 8e-69
seq216306 190 5e-46
seq212791 170 5e-40
seq231426 159 8e-37
seq211067 122 2e-25
seq118994 113 1e-22
seq194638 107 5e-21
seq28663 93.3 1e-16
seq72330 86.0 2e-14
seq216307 77.0 8e-12
>seq238195
Length=484
Score = 394 bits (436), Expect = 2e-107
Identities = 325/392 (83%), Gaps = 12/392 (3%)
Strand=Plus/Minus
Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63
|||||||||||| |||||||||||| |||||||| | |||| ||||||||| |||||||
Sbjct 388 CTTTACAACCCGCAGGCCTTCTTCACCCACGCGGCGTCGCTGGATCAGGCTTTCGCCCAT 329
Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 269
Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183
||||||||| ||||||||||||||||| |||||||||||| ||| |||| |||||| ||
Sbjct 268 TGGCTGGTCGTCCTCTCAGACCAGCTACGGATCGTCGCCTTGGTAGGCCGTTACCCTACC 209
Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTT- 242
||||||||||||| | |||| ||||| | ||| | ||||| ||||||| ||||
Sbjct 208 AACTAGCTAATCCGACTTGGGCTCATCTGTTAGCGCCAGGCCTTGCGGTCCCCGGCTTTC 149
Query 243 ---GGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATC 299
|| |||| ||||||||||||||| |||||| |||| |||||| | | |
Sbjct 148 CACCGTAGTGCG----TATGCGGTATTAGCCCGAGTTTCCCCGGGTTGTCCCCCACTAAC 93
Query 300 AGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCT 359
|||||| |||||| | ||||||||||||||||| ||||||||| | | | ||| |
Sbjct 92 AGGCAGATTCCCAAGCGTTACTCACCCGTCCGCCGCTCGTCAGC-ATGTA--TTGCTAC- 37
Query 360 TCCTGTTACCGTTCGACTTGCATGTGTTAGGC 391
|||||||||| ||||||||||||||||||||
Sbjct 36 ACCTGTTACCGCTCGACTTGCATGTGTTAGGC 5
>seq155949
Length=2432
Score = 302 bits (334), Expect = 1e-79
Identities = 304/394 (77%), Gaps = 31/394 (8%)
Strand=Plus/Plus
Query 21 CTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCAC 80
|||| ||| |||||||| | |||| |||||||||||||||||||| |||||||||||||
Sbjct 1 CTTCATCACCCACGCGGCGTCGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCAC 60
Query 81 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTC 140
||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||
Sbjct 61 TGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTC 120
Query 141 AGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCATC 200
|||||||||| |||||||||||| |||| ||| ||||| | ||||||||||||||| |
Sbjct 121 AGACCAGCTACGGATCGTCGCCTTGGTGAGCCGTTACCTCACCAACTAGCTAATCCGACG 180
Query 201 TGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGC 260
||| | ||| || | || | || | |||| | | || ||| |||
Sbjct 181 CGGGCCCCTCCAATGGCGAAA------AACTTTCCCC-CGTAGG----GCG----TATAG 225
Query 261 GGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTAC 320
||||||||| | |||||| | ||||| ||| ||| ||||| |||||| | ||||
Sbjct 226 GGTATTAGCTGCAGTTTCCCGCAGTTATTCCCTACCACTGGGCAGGTTCCCACGCGTTAC 285
Query 321 TCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGC 380
|||||||| |||||||||| | | |||| | | ||||||||||||
Sbjct 286 TCACCCGTGCGCCACTCGT----GTA--------TTGCTACACG----CGTTCGACTTGC 329
Query 381 ATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
||||||||||| |||||||||||||| ||||||
Sbjct 330 ATGTGTTAGGCATGCCGCCAGCGTTCGTTCTGAG 363
>seq163170
Length=29127
Score = 266 bits (294), Expect = 8e-69
Identities = 306/410 (75%), Gaps = 30/410 (7%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| |||||||| | | |||||||||| ||| | |||||||| ||||||||
Sbjct 27771 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 27830
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || |||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 27831 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 27890
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | |||
Sbjct 27891 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 27950
Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244
||||||||||| | | | | ||| || | || ||| ||| ||||
Sbjct 27951 ACTAGCTAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 27999
Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304
|| | | | || | ||||||||| |||||||||| ||| | ||||||| ||||
Sbjct 28000 TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 28057
Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364
| ||| | | |||||||||||||||||||| ||| || || ||||
Sbjct 28058 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 28103
Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|||| |||||||||||||||| || ||||||||||||||| |||||
Sbjct 28104 ---CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 28150
>seq216306
Length=502
Score = 190 bits (210), Expect = 5e-46
Identities = 206/271 (76%), Gaps = 8/271 (3%)
Strand=Plus/Minus
Query 146 AGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGT 205
||||| |||||||||||| ||||||| ||||||| ||||||||||||||| | ||
Sbjct 502 AGCTACGGATCGTCGCCTTGGTGGGCTCTTACCCCACCAACTAGCTAATCCGGCGTCGGC 443
Query 206 TCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTAT 265
|||||| | | | | |||| |||||| | |||| || || |||||||||
Sbjct 442 TCATCCCAGCGCGCGTGGCCTTGCGGTCCCACGCTTTCACCTCTCGGTCCCATGCGGTAT 383
Query 266 TAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACC 325
|||||| | |||| | |||||||||||| | | ||||| |||| | |||| ||||||
Sbjct 382 TAGCCAGCCTTTCGACTGGTTATCCCCCACGTTGGGGCAGATTCCGACGCATTCCTCACC 323
Query 326 CGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCC--TGTTACCGTTCGACTTGCATG 383
||||||||||||| | || | | | |||| || | | ||||||||||||||||
Sbjct 322 CGTCCGCCACTCG-CCGCCAGGGA-----TTGCTCCCCGCGCTGCCGTTCGACTTGCATG 269
Query 384 TGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|||||||| ||||||||||||||||||||||
Sbjct 268 TGTTAGGCATGCCGCCAGCGTTCAATCTGAG 238
>seq212791
Length=233936
Score = 170 bits (188), Expect = 5e-40
Identities = 154/193 (80%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61
|||||||| | | | | ||||||||| |||||| || |||| ||| ||||| |||||
Sbjct 165201 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 165142
Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121
||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| ||||
Sbjct 165141 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 165082
Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181
|||||||| |||||| |||||||||| | ||| | | || ||| ||| |||||
Sbjct 165081 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGA 165022
Query 182 CCAACTAGCTAAT 194
||||||| |||||
Sbjct 165021 CCAACTACCTAAT 165009
>seq231426
Length=569
Score = 159 bits (176), Expect = 8e-37
Identities = 150/191 (79%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || | ||| ||||||||| | | ||| | ||| ||| |||||||| ||||||||
Sbjct 451 TTCACGAACCGTAGGCCTTCTACCTCCACAAGACATTGCTCTGTCAGGCTTTCGCCCATT 392
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || |||||||||| || |||||||||||||| ||| | |||||| ||| |||||||
Sbjct 391 GCGGAAAATTCCCCACTACTACCTCCCGTAGGAGTTTGGGCTGTGTCTTAGTCCCAGTGT 332
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
||||| |||||||||| ||||| || |||| |||||| || | ||| || | |||
Sbjct 331 GGCTGATCATCCTCTCGGACCATTTACTGATCATCGCCTTAGTAATCTATTGCCTCACCA 272
Query 185 ACTAGCTAATC 195
|||||||||||
Sbjct 271 ACTAGCTAATC 261
>seq211067
Length=575
Score = 122 bits (134), Expect = 2e-25
Identities = 84/95 (88%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
||||| |||||||||||||| || |||||||| | ||||| |||||||| ||||||||
Sbjct 95 TTTACGACCCGAAGGCCTTCATCCCTCACGCGGCGTTGCTGCGTCAGGCTTTCGCCCATT 36
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGT 99
| |||| ||||||||||||||||||||||||||||
Sbjct 35 GCGCAAAATTCCCCACTGCTGCCTCCCGTAGGAGT 1
>seq118994
Length=4049
Score = 113 bits (124), Expect = 1e-22
Identities = 131/176 (74%), Gaps = 3/176 (2%)
Strand=Plus/Plus
Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79
|||||| | | ||| |||||| ||| | ||| || ||||||||| | || ||||||||
Sbjct 626 CCTTCTACCTCCACACGGCATTGCTCCTTCAAATTTACGCCCATTGCGGAAAATTCCCCA 685
Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139
|||||| ||| ||||||| ||| | | ||||||| | | || || || |||||||||
Sbjct 686 CTGCTG---CCCCTAGGAGTTTGGGCTGCATCTCAGTCCTAATGCGGTTGATCATCCTCT 742
Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195
| | |||||| |||| ||| || || | ||| || |||||||||| |||||
Sbjct 743 CGAATCAGCTATTGATCATCGTCTCAGTAAACTATTGCCTCGCCAACTAGTTAATC 798
>seq194638
Length=571
Score = 107 bits (118), Expect = 5e-21
Identities = 196/284 (69%), Gaps = 20/284 (7%)
Strand=Plus/Plus
Query 136 CTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195
||||||| || |||| ||||||||||| ||| |||| ||||||| ||||||||||||||
Sbjct 1 CTCTCAGGCCGGCTACCGATCGTCGCCTTGGTAGGCCTTTACCCCACCAACTAGCTAATC 60
Query 196 CCATCTGGGTTCATCCGATAGTGAGAGGCC--CGAAGGTCCCCCTCTTTGGTCTTGCGAC 253
| || | ||| |||| ||| | || |||| |||| || ||
Sbjct 61 GGACGCGGACCCCTCCTTCAGTGTGAGATCTTTCAA----CCCCACTTTCACCTCTCGGT 116
Query 254 GTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA-GTTTCCCA 312
||||||||||||||| |||||| |||||| |||| | |||| || |||
Sbjct 117 CGTATGCGGTATTAGCCCGGGTTTCCCCGGGTTATTCCCCGCTGAAGGGCAGGTCATCCA 176
Query 313 GACATTACTCACCCGTCCGCCACTCGTCAGCGAA--GCAGCAAGCTGCTTCCTGTTACCG 370
| |||||||||||| |||| |||| | | | | || || || || ||
Sbjct 177 CGCGTTACTCACCCGTTCGCCGCTCGACTGTGTATTGCTACACGC--CT---------CG 225
Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
||||||||||||||||| || |||||||||||||| ||||||
Sbjct 226 CTCGACTTGCATGTGTTAAGCACGCCGCCAGCGTTCATTCTGAG 269
>seq28663
Length=1805
Score = 93.3 bits (102), Expect = 1e-16
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||| | |||||||| | | |||||||||| ||| ||||| |||| | ||||||
Sbjct 1559 TTGACGACCTGTGGGCCTTCTACCTCCACGCGGCATTGCTCCATCATGCTTTCACCCATT 1618
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGT 108
| || | || ||||||||||||||||||||||| ||| ||||
Sbjct 1619 ACGAAAAAATCTCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGT 1662
>seq72330
Length=1340
Score = 86.0 bits (94), Expect = 2e-14
Identities = 71/87 (82%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 17 AGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCC 76
||||||||| | | ||| |||||| ||| | |||||||| |||| | |||| || |||||
Sbjct 138 AGGCCTTCTACCTCCACACGGCATTGCTCCGTCAGGCTTTCGCCTAGTGTGAAAAATTCC 197
Query 77 CCACTGCTGCCTCCCGTAGGAGTCTGG 103
||||||||||| ||||||||| |||
Sbjct 198 TTACTGCTGCCTCTCGTAGGAGTTTGG 224
>seq216307
Length=286
Score = 77.0 bits (84), Expect = 8e-12
Identities = 48/52 (92%), Gaps = 0/52 (0%)
Strand=Plus/Minus
Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGG 52
|| ||||||||||||||||||||||||| ||||||||||| |||| ||||||
Sbjct 52 GTGCTTTACAACCCGAAGGCCTTCTTCACACACGCGGCATTGCTGGATCAGG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1219484722688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |