Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq238195 394 2e-107 seq155949 302 1e-79 seq163170 266 8e-69 seq216306 190 5e-46 seq212791 170 5e-40 seq231426 159 8e-37 seq211067 122 2e-25 seq118994 113 1e-22 seq194638 107 5e-21 seq28663 93.3 1e-16 seq72330 86.0 2e-14 seq216307 77.0 8e-12 >seq238195 Length=484 Score = 394 bits (436), Expect = 2e-107 Identities = 325/392 (83%), Gaps = 12/392 (3%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||||||| |||||||||||| |||||||| | |||| ||||||||| ||||||| Sbjct 388 CTTTACAACCCGCAGGCCTTCTTCACCCACGCGGCGTCGCTGGATCAGGCTTTCGCCCAT 329 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 328 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 269 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||||||||| ||||||||||||||||| |||||||||||| ||| |||| |||||| || Sbjct 268 TGGCTGGTCGTCCTCTCAGACCAGCTACGGATCGTCGCCTTGGTAGGCCGTTACCCTACC 209 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTT- 242 ||||||||||||| | |||| ||||| | ||| | ||||| ||||||| |||| Sbjct 208 AACTAGCTAATCCGACTTGGGCTCATCTGTTAGCGCCAGGCCTTGCGGTCCCCGGCTTTC 149 Query 243 ---GGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATC 299 || |||| ||||||||||||||| |||||| |||| |||||| | | | Sbjct 148 CACCGTAGTGCG----TATGCGGTATTAGCCCGAGTTTCCCCGGGTTGTCCCCCACTAAC 93 Query 300 AGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCT 359 |||||| |||||| | ||||||||||||||||| ||||||||| | | | ||| | Sbjct 92 AGGCAGATTCCCAAGCGTTACTCACCCGTCCGCCGCTCGTCAGC-ATGTA--TTGCTAC- 37 Query 360 TCCTGTTACCGTTCGACTTGCATGTGTTAGGC 391 |||||||||| |||||||||||||||||||| Sbjct 36 ACCTGTTACCGCTCGACTTGCATGTGTTAGGC 5 >seq155949 Length=2432 Score = 302 bits (334), Expect = 1e-79 Identities = 304/394 (77%), Gaps = 31/394 (8%) Strand=Plus/Plus Query 21 CTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCAC 80 |||| ||| |||||||| | |||| |||||||||||||||||||| ||||||||||||| Sbjct 1 CTTCATCACCCACGCGGCGTCGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCAC 60 Query 81 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTC 140 ||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||| Sbjct 61 TGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTC 120 Query 141 AGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCATC 200 |||||||||| |||||||||||| |||| ||| ||||| | ||||||||||||||| | Sbjct 121 AGACCAGCTACGGATCGTCGCCTTGGTGAGCCGTTACCTCACCAACTAGCTAATCCGACG 180 Query 201 TGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGC 260 ||| | ||| || | || | || | |||| | | || ||| ||| Sbjct 181 CGGGCCCCTCCAATGGCGAAA------AACTTTCCCC-CGTAGG----GCG----TATAG 225 Query 261 GGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTAC 320 ||||||||| | |||||| | ||||| ||| ||| ||||| |||||| | |||| Sbjct 226 GGTATTAGCTGCAGTTTCCCGCAGTTATTCCCTACCACTGGGCAGGTTCCCACGCGTTAC 285 Query 321 TCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGC 380 |||||||| |||||||||| | | |||| | | |||||||||||| Sbjct 286 TCACCCGTGCGCCACTCGT----GTA--------TTGCTACACG----CGTTCGACTTGC 329 Query 381 ATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||| |||||||||||||| |||||| Sbjct 330 ATGTGTTAGGCATGCCGCCAGCGTTCGTTCTGAG 363 >seq163170 Length=29127 Score = 266 bits (294), Expect = 8e-69 Identities = 306/410 (75%), Gaps = 30/410 (7%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 27771 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 27830 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 27831 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 27890 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 27891 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 27950 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| || | || ||| ||| |||| Sbjct 27951 ACTAGCTAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 27999 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||| ||| | ||||||| |||| Sbjct 28000 TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 28057 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||||||||||| ||| || || |||| Sbjct 28058 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 28103 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 28104 ---CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 28150 >seq216306 Length=502 Score = 190 bits (210), Expect = 5e-46 Identities = 206/271 (76%), Gaps = 8/271 (3%) Strand=Plus/Minus Query 146 AGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGT 205 ||||| |||||||||||| ||||||| ||||||| ||||||||||||||| | || Sbjct 502 AGCTACGGATCGTCGCCTTGGTGGGCTCTTACCCCACCAACTAGCTAATCCGGCGTCGGC 443 Query 206 TCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTAT 265 |||||| | | | | |||| |||||| | |||| || || ||||||||| Sbjct 442 TCATCCCAGCGCGCGTGGCCTTGCGGTCCCACGCTTTCACCTCTCGGTCCCATGCGGTAT 383 Query 266 TAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACC 325 |||||| | |||| | |||||||||||| | | ||||| |||| | |||| |||||| Sbjct 382 TAGCCAGCCTTTCGACTGGTTATCCCCCACGTTGGGGCAGATTCCGACGCATTCCTCACC 323 Query 326 CGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCC--TGTTACCGTTCGACTTGCATG 383 ||||||||||||| | || | | | |||| || | | |||||||||||||||| Sbjct 322 CGTCCGCCACTCG-CCGCCAGGGA-----TTGCTCCCCGCGCTGCCGTTCGACTTGCATG 269 Query 384 TGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||| |||||||||||||||||||||| Sbjct 268 TGTTAGGCATGCCGCCAGCGTTCAATCTGAG 238 >seq212791 Length=233936 Score = 170 bits (188), Expect = 5e-40 Identities = 154/193 (80%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 165201 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 165142 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| |||| Sbjct 165141 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 165082 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||| |||||||||| | ||| | | || ||| ||| ||||| Sbjct 165081 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGA 165022 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 165021 CCAACTACCTAAT 165009 >seq231426 Length=569 Score = 159 bits (176), Expect = 8e-37 Identities = 150/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || | ||| ||||||||| | | ||| | ||| ||| |||||||| |||||||| Sbjct 451 TTCACGAACCGTAGGCCTTCTACCTCCACAAGACATTGCTCTGTCAGGCTTTCGCCCATT 392 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||| || |||||||||||||| ||| | |||||| ||| ||||||| Sbjct 391 GCGGAAAATTCCCCACTACTACCTCCCGTAGGAGTTTGGGCTGTGTCTTAGTCCCAGTGT 332 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||| || |||| |||||| || | ||| || | ||| Sbjct 331 GGCTGATCATCCTCTCGGACCATTTACTGATCATCGCCTTAGTAATCTATTGCCTCACCA 272 Query 185 ACTAGCTAATC 195 ||||||||||| Sbjct 271 ACTAGCTAATC 261 >seq211067 Length=575 Score = 122 bits (134), Expect = 2e-25 Identities = 84/95 (88%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||| |||||||||||||| || |||||||| | ||||| |||||||| |||||||| Sbjct 95 TTTACGACCCGAAGGCCTTCATCCCTCACGCGGCGTTGCTGCGTCAGGCTTTCGCCCATT 36 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGT 99 | |||| |||||||||||||||||||||||||||| Sbjct 35 GCGCAAAATTCCCCACTGCTGCCTCCCGTAGGAGT 1 >seq118994 Length=4049 Score = 113 bits (124), Expect = 1e-22 Identities = 131/176 (74%), Gaps = 3/176 (2%) Strand=Plus/Plus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 |||||| | | ||| |||||| ||| | ||| || ||||||||| | || |||||||| Sbjct 626 CCTTCTACCTCCACACGGCATTGCTCCTTCAAATTTACGCCCATTGCGGAAAATTCCCCA 685 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 |||||| ||| ||||||| ||| | | ||||||| | | || || || ||||||||| Sbjct 686 CTGCTG---CCCCTAGGAGTTTGGGCTGCATCTCAGTCCTAATGCGGTTGATCATCCTCT 742 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 | | |||||| |||| ||| || || | ||| || |||||||||| ||||| Sbjct 743 CGAATCAGCTATTGATCATCGTCTCAGTAAACTATTGCCTCGCCAACTAGTTAATC 798 >seq194638 Length=571 Score = 107 bits (118), Expect = 5e-21 Identities = 196/284 (69%), Gaps = 20/284 (7%) Strand=Plus/Plus Query 136 CTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 ||||||| || |||| ||||||||||| ||| |||| ||||||| |||||||||||||| Sbjct 1 CTCTCAGGCCGGCTACCGATCGTCGCCTTGGTAGGCCTTTACCCCACCAACTAGCTAATC 60 Query 196 CCATCTGGGTTCATCCGATAGTGAGAGGCC--CGAAGGTCCCCCTCTTTGGTCTTGCGAC 253 | || | ||| |||| ||| | || |||| |||| || || Sbjct 61 GGACGCGGACCCCTCCTTCAGTGTGAGATCTTTCAA----CCCCACTTTCACCTCTCGGT 116 Query 254 GTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA-GTTTCCCA 312 ||||||||||||||| |||||| |||||| |||| | |||| || ||| Sbjct 117 CGTATGCGGTATTAGCCCGGGTTTCCCCGGGTTATTCCCCGCTGAAGGGCAGGTCATCCA 176 Query 313 GACATTACTCACCCGTCCGCCACTCGTCAGCGAA--GCAGCAAGCTGCTTCCTGTTACCG 370 | |||||||||||| |||| |||| | | | | || || || || || Sbjct 177 CGCGTTACTCACCCGTTCGCCGCTCGACTGTGTATTGCTACACGC--CT---------CG 225 Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||||||| || |||||||||||||| |||||| Sbjct 226 CTCGACTTGCATGTGTTAAGCACGCCGCCAGCGTTCATTCTGAG 269 >seq28663 Length=1805 Score = 93.3 bits (102), Expect = 1e-16 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||| | |||||||| | | |||||||||| ||| ||||| |||| | |||||| Sbjct 1559 TTGACGACCTGTGGGCCTTCTACCTCCACGCGGCATTGCTCCATCATGCTTTCACCCATT 1618 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGT 108 | || | || ||||||||||||||||||||||| ||| |||| Sbjct 1619 ACGAAAAAATCTCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGT 1662 >seq72330 Length=1340 Score = 86.0 bits (94), Expect = 2e-14 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 17 AGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCC 76 ||||||||| | | ||| |||||| ||| | |||||||| |||| | |||| || ||||| Sbjct 138 AGGCCTTCTACCTCCACACGGCATTGCTCCGTCAGGCTTTCGCCTAGTGTGAAAAATTCC 197 Query 77 CCACTGCTGCCTCCCGTAGGAGTCTGG 103 ||||||||||| ||||||||| ||| Sbjct 198 TTACTGCTGCCTCTCGTAGGAGTTTGG 224 >seq216307 Length=286 Score = 77.0 bits (84), Expect = 8e-12 Identities = 48/52 (92%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGG 52 || ||||||||||||||||||||||||| ||||||||||| |||| |||||| Sbjct 52 GTGCTTTACAACCCGAAGGCCTTCTTCACACACGCGGCATTGCTGGATCAGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1219484722688