Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq211067 378 2e-102 seq163170 277 4e-72 seq212791 217 4e-54 seq216307 178 3e-42 seq55928 73.4 9e-11 >seq211067 Length=575 Score = 378 bits (418), Expect = 2e-102 Identities = 323/399 (81%), Gaps = 0/399 (0%) Strand=Plus/Plus Query 10 AGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTAT 69 ||||||| |||||||||| |||||||||||||||||||||||| |||| || |||||| | Sbjct 159 AGGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTGT 218 Query 70 CCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTA 129 |||||||||||||||||||| | | ||||| || || ||||| | |||||| | Sbjct 219 TCGGAATTACTGGGCGTAAAGCGCGTGTAGGCGGCTTGGCAAGTCGGTTGTGAAATCCCC 278 Query 130 TGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGG 189 |||| ||||| || | ||| |||||| | |||||||| |||| || | | | Sbjct 279 GGGCTTAACCCGGGAAATGCGACCGAAACTACCTCGCTAGAGTCTCGGAGAGGAAGGCAG 338 Query 190 AATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGG 249 |||||| ||||||| |||||||| |||||||| | ||||||| ||| || |||||||||| Sbjct 339 AATTCCCAGTGTAGGGGTGAAATCCGTAGATACTGGGAGGAATACCGGTAGCGAAGGCGG 398 Query 250 CTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATA 309 | | |||||| | |||||| || |||| ||||||||||||||||||||||||||||||| Sbjct 399 CCTTCTGGACGATGACTGACGCTCAGGCGCGAAAGCGTGGGGAGCAAACAGGATTAGATA 458 Query 310 CCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGG 369 |||||||||||||||||||||||||||| |||||||||||||| | | |||||| Sbjct 459 CCCTGGTAGTCCACGCCGTAAACGATGAGCACTAGGTGTCGGGGGTATTGACCCCTCCGG 518 Query 370 TGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||||| ||| |||||| ||||| || ||||||||||| Sbjct 519 TGCCGTAGCTAACGCATTAAGTGCACCGCCTGGGGAGTA 557 >seq163170 Length=29127 Score = 277 bits (306), Expect = 4e-72 Identities = 306/405 (76%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||||||||||||||||||| ||| || ||| Sbjct 27736 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 27677 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 27676 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 27617 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 27616 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 27557 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 27556 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 27497 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 27496 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 27437 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| |||||||| | | | ||| || | Sbjct 27436 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 27378 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 27377 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 27333 >seq212791 Length=233936 Score = 217 bits (240), Expect = 4e-54 Identities = 254/340 (75%), Gaps = 10/340 (3%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 165232 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 165291 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||||||||||||||| |||||| ||| | || | ||| Sbjct 165292 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 165351 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 |||| | | | || | | ||| |||| | ||||| | || || ||||| Sbjct 165352 AAAGTC---GCCAAAAACTGGCGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAC 165405 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || ||||||||| | |||||| |||||||| || |||| | | |||||| ||| Sbjct 165406 AGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCTACGAAGGAACGCCAA 165465 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| ||| |||| || ||| ||| | ||||||| |||||||| || Sbjct 165466 AAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGAGTGCGAAAGCATGGGGAGCGAA 165525 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 | ||||||||||||||||||||||| |||||||||||||| Sbjct 165526 CGGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 165565 >seq216307 Length=286 Score = 178 bits (196), Expect = 3e-42 Identities = 143/173 (83%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||| |||||||||||||||||||||||| |||| || ||||||| || Sbjct 114 AAGCACCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGTGCAAGCGTTAATCG 173 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||||||||||||||||| ||||||||| ||||| ||||||||| ||||||| | || Sbjct 174 GAATTACTGGGCGTAAAGCGTGCGTAGGCGGTTTTGTAAGTCAGATGTGAAAGCCCCGGG 233 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAA 185 ||||||| || | ||| ||||| ||||| ||| |||| | |||| || || Sbjct 234 CTCAACCTGGGAATTGCATTTGAGACTGCGTAGCTTGAGTCCGGGAGAGGGAA 286 >seq55928 Length=2162 Score = 73.4 bits (80), Expect = 9e-11 Identities = 109/155 (70%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 188 GGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGC 247 |||||| |||| || ||||| |||| | |||| | | ||||||| |||||| || Sbjct 1822 GGAATTTTCAGTGGAGTAGTGAAGTGCGCAAATATCATAAAGAACACCGAAGGCGAAAGC 1881 Query 248 GGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGA 307 || ||| | |||||||||| | | ||||| ||| ||| || |||||||| Sbjct 1882 ACTGTGTTGGGCCAACACTGACACTGGGAGACAAAAGCTAGGGAAGCGAATGGGATTAGA 1941 Query 308 TACCCTGGTAGTCCACGCCGTAAACGATGAATACT 342 |||| |||||| ||| ||||||||| ||||| Sbjct 1942 TACCTCAATAGTCCTAGCCATAAACGATGGATACT 1976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1200330512384