Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= AAMG01002183.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
seq211067 378 2e-102
seq163170 277 4e-72
seq212791 217 4e-54
seq216307 178 3e-42
seq55928 73.4 9e-11
>seq211067
Length=575
Score = 378 bits (418), Expect = 2e-102
Identities = 323/399 (81%), Gaps = 0/399 (0%)
Strand=Plus/Plus
Query 10 AGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTAT 69
||||||| |||||||||| |||||||||||||||||||||||| |||| || |||||| |
Sbjct 159 AGGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTGT 218
Query 70 CCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTA 129
|||||||||||||||||||| | | ||||| || || ||||| | |||||| |
Sbjct 219 TCGGAATTACTGGGCGTAAAGCGCGTGTAGGCGGCTTGGCAAGTCGGTTGTGAAATCCCC 278
Query 130 TGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGG 189
|||| ||||| || | ||| |||||| | |||||||| |||| || | | |
Sbjct 279 GGGCTTAACCCGGGAAATGCGACCGAAACTACCTCGCTAGAGTCTCGGAGAGGAAGGCAG 338
Query 190 AATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGG 249
|||||| ||||||| |||||||| |||||||| | ||||||| ||| || ||||||||||
Sbjct 339 AATTCCCAGTGTAGGGGTGAAATCCGTAGATACTGGGAGGAATACCGGTAGCGAAGGCGG 398
Query 250 CTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATA 309
| | |||||| | |||||| || |||| |||||||||||||||||||||||||||||||
Sbjct 399 CCTTCTGGACGATGACTGACGCTCAGGCGCGAAAGCGTGGGGAGCAAACAGGATTAGATA 458
Query 310 CCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGG 369
|||||||||||||||||||||||||||| |||||||||||||| | | ||||||
Sbjct 459 CCCTGGTAGTCCACGCCGTAAACGATGAGCACTAGGTGTCGGGGGTATTGACCCCTCCGG 518
Query 370 TGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408
||||| ||| |||||| ||||| || |||||||||||
Sbjct 519 TGCCGTAGCTAACGCATTAAGTGCACCGCCTGGGGAGTA 557
>seq163170
Length=29127
Score = 277 bits (306), Expect = 4e-72
Identities = 306/405 (76%), Gaps = 2/405 (0%)
Strand=Plus/Minus
Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64
|| ||| |||| ||||||||| |||||||||||||||||||||| ||| || |||
Sbjct 27736 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 27677
Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124
|||||||||||| | ||||||||||| || |||||||| || ||||||| | || |||
Sbjct 27676 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 27617
Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184
| | |||||||||| || || | |||||| | ||| |||| | | |||||||
Sbjct 27616 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 27557
Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244
|||||| | ||| |||||||||||||||||| || | | |||||||| ||||||
Sbjct 27556 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 27497
Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304
|| |||||| | | |||||||||||| ||||||| ||||||| || |||||
Sbjct 27496 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 27437
Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363
|||||||| ||||||| ||||||||||||| |||||||| | | | ||| || |
Sbjct 27436 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 27378
Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408
| | |||| | ||| ||||| ||||||| || |||||||||||
Sbjct 27377 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 27333
>seq212791
Length=233936
Score = 217 bits (240), Expect = 4e-54
Identities = 254/340 (75%), Gaps = 10/340 (3%)
Strand=Plus/Plus
Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61
||| ||||| |||||||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct 165232 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 165291
Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121
|| ||| | |||||| ||||||||||||||| |||||| ||| | || | |||
Sbjct 165292 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 165351
Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177
|||| | | | || | | ||| |||| | ||||| | || || |||||
Sbjct 165352 AAAGTC---GCCAAAAACTGGCGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAC 165405
Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237
|| || ||||||||| | |||||| |||||||| || |||| | | |||||| |||
Sbjct 165406 AGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCTACGAAGGAACGCCAA 165465
Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297
|||||||| ||| |||| || ||| ||| | ||||||| |||||||| ||
Sbjct 165466 AAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGAGTGCGAAAGCATGGGGAGCGAA 165525
Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337
| ||||||||||||||||||||||| ||||||||||||||
Sbjct 165526 CGGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 165565
>seq216307
Length=286
Score = 178 bits (196), Expect = 3e-42
Identities = 143/173 (83%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72
|||| |||||||||| |||||||||||||||||||||||| |||| || ||||||| ||
Sbjct 114 AAGCACCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGTGCAAGCGTTAATCG 173
Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132
|||||||||||||||||| ||||||||| ||||| ||||||||| ||||||| | ||
Sbjct 174 GAATTACTGGGCGTAAAGCGTGCGTAGGCGGTTTTGTAAGTCAGATGTGAAAGCCCCGGG 233
Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAA 185
||||||| || | ||| ||||| ||||| ||| |||| | |||| || ||
Sbjct 234 CTCAACCTGGGAATTGCATTTGAGACTGCGTAGCTTGAGTCCGGGAGAGGGAA 286
>seq55928
Length=2162
Score = 73.4 bits (80), Expect = 9e-11
Identities = 109/155 (70%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 188 GGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGC 247
|||||| |||| || ||||| |||| | |||| | | ||||||| |||||| ||
Sbjct 1822 GGAATTTTCAGTGGAGTAGTGAAGTGCGCAAATATCATAAAGAACACCGAAGGCGAAAGC 1881
Query 248 GGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGA 307
|| ||| | |||||||||| | | ||||| ||| ||| || ||||||||
Sbjct 1882 ACTGTGTTGGGCCAACACTGACACTGGGAGACAAAAGCTAGGGAAGCGAATGGGATTAGA 1941
Query 308 TACCCTGGTAGTCCACGCCGTAAACGATGAATACT 342
|||| |||||| ||| ||||||||| |||||
Sbjct 1942 TACCTCAATAGTCCTAGCCATAAACGATGGATACT 1976
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1200330512384
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |