Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq206697 181 2e-43 seq198914 176 8e-42 seq159612 152 9e-35 seq170992 140 6e-31 seq163170 132 9e-29 seq155431 114 2e-23 seq181801 80.6 5e-13 seq212791 77.0 6e-12 >seq206697 Length=2363 Score = 181 bits (200), Expect = 2e-43 Identities = 188/242 (78%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| ||||| |||||||||| | | |||||||||||||||||| | ||||||| Sbjct 1691 AGGGCATTTGGTGAATGCCTTGGCACTGAGAGGCGATGAAGGACGTAGCACGCTGCGATA 1632 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 ||| ||||||| | || | | | | |||||||| ||| |||||||||||||||||| | Sbjct 1631 AGCCACGGGGAGGG-GCGAGCGCCCGTTGATCCGTGGATCTCCGAATGGGGAAACCCGAC 1573 Query 121 CCT-TTGGGTCATTGCATGCTGAATACATAG--GTATGCAAAGCGAACGCGGCGAACTGA 177 || ||| ||||| | ||||| ||||| | | | | || ||| ||| ||||||| Sbjct 1572 TCTATTGAGTCATCCTTCGATGAATCCATAGTCGAAGG--ACGCTAACCCGGGGAACTGA 1515 Query 178 AACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGA 237 ||||||| |||| ||| |||||| || ||||||||||| ||| ||||||||||||||| Sbjct 1514 AACATCTCAGTACCTGGAGGAAAGGACATCAACCGAGACTCCGCTAGTAGTGGCGAGCGA 1455 Query 238 AA 239 || Sbjct 1454 AA 1453 >seq198914 Length=2821 Score = 176 bits (194), Expect = 8e-42 Identities = 187/247 (76%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 11 GTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGG 70 |||||||||||||||| ||||||||||||||||||| |||||||||| ||||| Sbjct 2006 GTGGATGCCTTGGCGACGGACGGCGATGAAGGACGTAGTAAGCTGCGATAAGCCTCGGGG 1947 Query 71 AGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTT------ 124 || ||||| || ||||||| ||| |||||||||| ||||| |||| Sbjct 1946 AGCCGCTAAACAGGCTGTGATCCGTGGATGTCCGAATGGGAAAACCTGGCCGAGCAGACC 1887 Query 125 TGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCT 184 | || ||| | | ||||||||||| | |||| |||| || ||| |||||||||| Sbjct 1886 TCGGCCATATTAGGGTGAATACATAGCCCTAATAAGCAAACGAGGGGAAGTGAAACATCT 1827 Query 185 AAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 |||| | |||||| ||||||||||||| |||||| ||||| ||||||||||| |||| Sbjct 1826 CAGTACCCTCAGGAAGAGAAATCAACCGATATTCCCTTAGTAGCGGCGAGCGAAAGGGGA 1767 Query 245 TGAGCCT 251 |||||| Sbjct 1766 AGAGCCT 1760 >seq159612 Length=999 Score = 152 bits (168), Expect = 9e-35 Identities = 190/258 (74%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||||| ||||||||||||||| | |||||| ||||||||| | | ||||||| Sbjct 585 AGGGCACACGGTGGATGCCTTGGCACCAAGAGGCGAAGAAGGACGTGGACGACTGCGATA 644 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 ||| ||| ||| |||| | |||| ||| ||||||||||||||||||||| || Sbjct 645 AGCCACGGTGAGGCGTTGAACAGCCCTTGACCCGTGGATTTCCGAATGGGGAAACCCAGC 704 Query 121 CCT-----TTGGGT--CATTGCATGCTGAATACATAGGTATGC-AAAGCGAACGCGGCGA 172 || | ||| | | | |||||| ||||||| || | ||| || || || Sbjct 705 ACTGGTAATGCGGTGCTACTCCCGGCTGAACACATAGGCCGGCGAGAGCCAAGCGGGGGA 764 Query 173 ACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCG 232 | |||||||||| |||| | |||||| ||||||||||||| |||| |||||||||| Sbjct 765 AGTGAAACATCTCAGTACCCCGAGGAAAGTAAATCAACCGAGACTCCCTGAGTAGTGGCG 824 Query 233 AGCGAAATGGGATGAGCC 250 ||||||| ||||| |||| Sbjct 825 AGCGAAAGGGGATCAGCC 842 >seq170992 Length=905 Score = 140 bits (154), Expect = 6e-31 Identities = 183/251 (73%), Gaps = 8/251 (3%) Strand=Plus/Minus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 ||||||||||||||||| || || ||||||||||||| | |||||||||| || Sbjct 552 ATGGTGGATGCCTTGGCATCTAGAGCCGATGAAGGACGTGAACGACTGCGATAAGCCACG 493 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCC----- 122 || || || | | |||||||| ||| |||||||||| ||||||||| | Sbjct 492 GGAAGGCGTTGAATAGCCATTGATCCGTGGATCTCCGAATGGGTAAACCCGGCACCGGTA 433 Query 123 -TTTGG-GTCATTGCATGCTGAATACATAGGTA-TGCAAAGCGAACGCGGCGAACTGAAA 179 | || |||| ||| |||||| ||||||| |||| | || || ||| ||||| Sbjct 432 ATGCGGTGTCACTGCCGGCTGAACACATAGGCCGTGCAGCGGTAAGCGGGGGAAGTGAAA 373 Query 180 CATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAA 239 ||||| |||| | |||||| ||||||||||||| |||| ||||| ||||||||||| Sbjct 372 CATCTCAGTACCCCGAGGAAAGTAAATCAACCGAGACTCCCTGAGTAGCGGCGAGCGAAA 313 Query 240 TGGGATGAGCC 250 |||| |||| Sbjct 312 AGGGAACAGCC 302 >seq163170 Length=29127 Score = 132 bits (146), Expect = 9e-29 Identities = 178/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 24234 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 24175 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| | Sbjct 24174 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 24122 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 24121 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 24065 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 24064 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 24005 Query 249 CCT 251 ||| Sbjct 24004 CCT 24002 >seq155431 Length=1149 Score = 114 bits (126), Expect = 2e-23 Identities = 91/108 (84%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 |||||||||||||||| | |||||||||||||||| ||| ||||||||||| ||| Sbjct 842 GGTGGATGCCTTGGCGGCAAGAGGCGATGAAGGACGTGGTACGCTGCGATAAGCTACGGT 901 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 ||| | || |||| |||||| ||| |||||||||||||||||||||| Sbjct 902 GAG-GTGCGAACAGCCTTTGACCCGTAGATTTCCGAATGGGGAAACCC 948 Score = 114 bits (126), Expect = 2e-23 Identities = 87/103 (84%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 136 ATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 || ||||||||||||| || ||||| ||| ||| ||||||||||||||||||| | | | Sbjct 1037 ATCCTGAATACATAGGGATCAAAAGCAAACCCGGGGAACTGAAACATCTAAGTACCCGGA 1096 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 ||||| || ||||||||||| ||| |||||||||||||||| Sbjct 1097 GGAAAGGACATCAACCGAGACTCCGTTAGTAGTGGCGAGCGAA 1139 >seq181801 Length=713 Score = 80.6 bits (88), Expect = 5e-13 Identities = 90/118 (76%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 4 GCACATGGTGGATGCCTTGGCGATTA-CAGGCGATGAAGGACGTAGTAGCTTGCGATAAG 62 || |||||||||||||| ||| || | || ||||||||||||| | || |||||| | Sbjct 523 GCGCATGGTGGATGCCTGGGC-ATCAGGAGCCGATGAAGGACGTGGGAGACCGCGATAGG 581 Query 63 CTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 | |||||||| ||| | || ||||||| ||| ||||||||||| ||||| || Sbjct 582 CCTCGGGGAGTTGTCAACCGAGCTGTGATCCGAGGATGTCCGAATGGGGTAACCCAGC 639 >seq212791 Length=233936 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 194837 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 194896 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 194897 GGCGAGCGAGAGCGGAT 194913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 916209726208