Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= AAMG01002194.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq206697 181 2e-43
seq198914 176 8e-42
seq159612 152 9e-35
seq170992 140 6e-31
seq163170 132 9e-29
seq155431 114 2e-23
seq181801 80.6 5e-13
seq212791 77.0 6e-12
>seq206697
Length=2363
Score = 181 bits (200), Expect = 2e-43
Identities = 188/242 (78%), Gaps = 6/242 (2%)
Strand=Plus/Minus
Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60
|| ||| ||||| |||||||||| | | |||||||||||||||||| | |||||||
Sbjct 1691 AGGGCATTTGGTGAATGCCTTGGCACTGAGAGGCGATGAAGGACGTAGCACGCTGCGATA 1632
Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120
||| ||||||| | || | | | | |||||||| ||| |||||||||||||||||| |
Sbjct 1631 AGCCACGGGGAGGG-GCGAGCGCCCGTTGATCCGTGGATCTCCGAATGGGGAAACCCGAC 1573
Query 121 CCT-TTGGGTCATTGCATGCTGAATACATAG--GTATGCAAAGCGAACGCGGCGAACTGA 177
|| ||| ||||| | ||||| ||||| | | | | || ||| ||| |||||||
Sbjct 1572 TCTATTGAGTCATCCTTCGATGAATCCATAGTCGAAGG--ACGCTAACCCGGGGAACTGA 1515
Query 178 AACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGA 237
||||||| |||| ||| |||||| || ||||||||||| ||| |||||||||||||||
Sbjct 1514 AACATCTCAGTACCTGGAGGAAAGGACATCAACCGAGACTCCGCTAGTAGTGGCGAGCGA 1455
Query 238 AA 239
||
Sbjct 1454 AA 1453
>seq198914
Length=2821
Score = 176 bits (194), Expect = 8e-42
Identities = 187/247 (76%), Gaps = 6/247 (2%)
Strand=Plus/Minus
Query 11 GTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGG 70
|||||||||||||||| ||||||||||||||||||| |||||||||| |||||
Sbjct 2006 GTGGATGCCTTGGCGACGGACGGCGATGAAGGACGTAGTAAGCTGCGATAAGCCTCGGGG 1947
Query 71 AGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTT------ 124
|| ||||| || ||||||| ||| |||||||||| ||||| ||||
Sbjct 1946 AGCCGCTAAACAGGCTGTGATCCGTGGATGTCCGAATGGGAAAACCTGGCCGAGCAGACC 1887
Query 125 TGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCT 184
| || ||| | | ||||||||||| | |||| |||| || ||| ||||||||||
Sbjct 1886 TCGGCCATATTAGGGTGAATACATAGCCCTAATAAGCAAACGAGGGGAAGTGAAACATCT 1827
Query 185 AAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244
|||| | |||||| ||||||||||||| |||||| ||||| ||||||||||| ||||
Sbjct 1826 CAGTACCCTCAGGAAGAGAAATCAACCGATATTCCCTTAGTAGCGGCGAGCGAAAGGGGA 1767
Query 245 TGAGCCT 251
||||||
Sbjct 1766 AGAGCCT 1760
>seq159612
Length=999
Score = 152 bits (168), Expect = 9e-35
Identities = 190/258 (74%), Gaps = 8/258 (3%)
Strand=Plus/Plus
Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60
|| ||||| ||||||||||||||| | |||||| ||||||||| | | |||||||
Sbjct 585 AGGGCACACGGTGGATGCCTTGGCACCAAGAGGCGAAGAAGGACGTGGACGACTGCGATA 644
Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120
||| ||| ||| |||| | |||| ||| ||||||||||||||||||||| ||
Sbjct 645 AGCCACGGTGAGGCGTTGAACAGCCCTTGACCCGTGGATTTCCGAATGGGGAAACCCAGC 704
Query 121 CCT-----TTGGGT--CATTGCATGCTGAATACATAGGTATGC-AAAGCGAACGCGGCGA 172
|| | ||| | | | |||||| ||||||| || | ||| || || ||
Sbjct 705 ACTGGTAATGCGGTGCTACTCCCGGCTGAACACATAGGCCGGCGAGAGCCAAGCGGGGGA 764
Query 173 ACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCG 232
| |||||||||| |||| | |||||| ||||||||||||| |||| ||||||||||
Sbjct 765 AGTGAAACATCTCAGTACCCCGAGGAAAGTAAATCAACCGAGACTCCCTGAGTAGTGGCG 824
Query 233 AGCGAAATGGGATGAGCC 250
||||||| ||||| ||||
Sbjct 825 AGCGAAAGGGGATCAGCC 842
>seq170992
Length=905
Score = 140 bits (154), Expect = 6e-31
Identities = 183/251 (73%), Gaps = 8/251 (3%)
Strand=Plus/Minus
Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67
||||||||||||||||| || || ||||||||||||| | |||||||||| ||
Sbjct 552 ATGGTGGATGCCTTGGCATCTAGAGCCGATGAAGGACGTGAACGACTGCGATAAGCCACG 493
Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCC----- 122
|| || || | | |||||||| ||| |||||||||| ||||||||| |
Sbjct 492 GGAAGGCGTTGAATAGCCATTGATCCGTGGATCTCCGAATGGGTAAACCCGGCACCGGTA 433
Query 123 -TTTGG-GTCATTGCATGCTGAATACATAGGTA-TGCAAAGCGAACGCGGCGAACTGAAA 179
| || |||| ||| |||||| ||||||| |||| | || || ||| |||||
Sbjct 432 ATGCGGTGTCACTGCCGGCTGAACACATAGGCCGTGCAGCGGTAAGCGGGGGAAGTGAAA 373
Query 180 CATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAA 239
||||| |||| | |||||| ||||||||||||| |||| ||||| |||||||||||
Sbjct 372 CATCTCAGTACCCCGAGGAAAGTAAATCAACCGAGACTCCCTGAGTAGCGGCGAGCGAAA 313
Query 240 TGGGATGAGCC 250
|||| ||||
Sbjct 312 AGGGAACAGCC 302
>seq163170
Length=29127
Score = 132 bits (146), Expect = 9e-29
Identities = 178/243 (73%), Gaps = 11/243 (5%)
Strand=Plus/Minus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||||
Sbjct 24234 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 24175
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | | |||||| ||||| |||||| || |||| ||| |
Sbjct 24174 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 24122
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| |||
Sbjct 24121 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 24065
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| ||
Sbjct 24064 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 24005
Query 249 CCT 251
|||
Sbjct 24004 CCT 24002
>seq155431
Length=1149
Score = 114 bits (126), Expect = 2e-23
Identities = 91/108 (84%), Gaps = 1/108 (1%)
Strand=Plus/Plus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
|||||||||||||||| | |||||||||||||||| ||| ||||||||||| |||
Sbjct 842 GGTGGATGCCTTGGCGGCAAGAGGCGATGAAGGACGTGGTACGCTGCGATAAGCTACGGT 901
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117
||| | || |||| |||||| ||| ||||||||||||||||||||||
Sbjct 902 GAG-GTGCGAACAGCCTTTGACCCGTAGATTTCCGAATGGGGAAACCC 948
Score = 114 bits (126), Expect = 2e-23
Identities = 87/103 (84%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 136 ATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195
|| ||||||||||||| || ||||| ||| ||| ||||||||||||||||||| | | |
Sbjct 1037 ATCCTGAATACATAGGGATCAAAAGCAAACCCGGGGAACTGAAACATCTAAGTACCCGGA 1096
Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238
||||| || ||||||||||| ||| ||||||||||||||||
Sbjct 1097 GGAAAGGACATCAACCGAGACTCCGTTAGTAGTGGCGAGCGAA 1139
>seq181801
Length=713
Score = 80.6 bits (88), Expect = 5e-13
Identities = 90/118 (76%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 4 GCACATGGTGGATGCCTTGGCGATTA-CAGGCGATGAAGGACGTAGTAGCTTGCGATAAG 62
|| |||||||||||||| ||| || | || ||||||||||||| | || |||||| |
Sbjct 523 GCGCATGGTGGATGCCTGGGC-ATCAGGAGCCGATGAAGGACGTGGGAGACCGCGATAGG 581
Query 63 CTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120
| |||||||| ||| | || ||||||| ||| ||||||||||| ||||| ||
Sbjct 582 CCTCGGGGAGTTGTCAACCGAGCTGTGATCCGAGGATGTCCGAATGGGGTAACCCAGC 639
>seq212791
Length=233936
Score = 77.0 bits (84), Expect = 6e-12
Identities = 63/77 (82%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228
|||||||||||||||| ||||||| ||||| |||||||||||||| || |||||
Sbjct 194837 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 194896
Query 229 GGCGAGCGAAATGGGAT 245
||||||||| | ||||
Sbjct 194897 GGCGAGCGAGAGCGGAT 194913
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 916209726208
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |