Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq118331 699 0.0
seq238307 158 4e-36
seq115161 107 6e-21
seq222639 86.0 2e-14
seq212791 78.8 3e-12
>seq118331
Length=3954
Score = 699 bits (774), Expect = 0.0
Identities = 478/534 (90%), Gaps = 7/534 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || ||| ||||||||||||||| |||| | |||||||||||||||||||
Sbjct 3183 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 3124
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 3123 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 3064
Query 127 GGCCCGCGAA---GGACCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCA 182
||||| || || |||| ||| ||| | || | ||| || |||| ||||
Sbjct 3063 GGCCCCCGTGAGGGGGCCTTGGGTCCAAAAAGAGGGGCAGTGCC--CCGCCTCCGATTCA 3006
Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAAC-GGCTCCC 241
|| ||||||||| |||| ||| ||||||||||||||||| ||||| | |||||||
Sbjct 3005 CGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCGTTTCCGGCTCCC 2946
Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2945 ACTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 2886
Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 2885 TCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGT 2826
Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2825 AGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 2766
Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2765 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 2706
Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 2705 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATC 2652
>seq238307
Length=614
Score = 158 bits (174), Expect = 4e-36
Identities = 90/92 (98%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 582
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCC 98
||||||||||||||||||||||||||||||||
Sbjct 583 GTTTAACAGATGTGCCGCCCCAGCCAAACTCC 614
>seq115161
Length=3092
Score = 107 bits (118), Expect = 6e-21
Identities = 89/109 (82%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67
||||| || ||| ||||||||||||||| |||| | ||||||| | |||||||
Sbjct 1686 TTTTGTTCCACAAGAGATTTCTGTTCTCATTGAGCTCATCTTAGGATAATTGCGTTAGCT 1627
Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116
||||||||||||| || ||||||||||||||||| |||||||| || ||
Sbjct 1626 TTTAACAGATGTGTCGTCCCAGCCAAACTCCCCATCTGACAATATCTTC 1578
>seq222639
Length=1624
Score = 86.0 bits (94), Expect = 2e-14
Identities = 93/121 (77%), Gaps = 2/121 (2%)
Strand=Plus/Minus
Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTG-CGCCGAAACGG-CTCCCA 242
|| || |||||| || | ||| | |||| |||||||| || | | | | || |||
Sbjct 208 GAATACGTAAAATAATGTTAATGCTAGTAGTATTTCATTTTTCACTGTCTCCAACTTCCA 149
Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302
||||| ||||||| ||||||||||||| |||||| ||||||||||||||||| || ||
Sbjct 148 CTTATACTACACCATTCAAGTCATTTCATAAAGTCATACTAGAGTCAAGCTCAATAGAGT 89
Query 303 C 303
|
Sbjct 88 C 88
>seq212791
Length=233936
Score = 78.8 bits (86), Expect = 3e-12
Identities = 81/106 (76%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428
||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| ||||
Sbjct 196930 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 196871
Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474
||||||||| || ||| | ||||||| |||||||||||| | ||||
Sbjct 196870 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 196825
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1631300244224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |