Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq118331 699 0.0 seq238307 158 4e-36 seq115161 107 6e-21 seq222639 86.0 2e-14 seq212791 78.8 3e-12 >seq118331 Length=3954 Score = 699 bits (774), Expect = 0.0 Identities = 478/534 (90%), Gaps = 7/534 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 3183 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 3124 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 3123 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 3064 Query 127 GGCCCGCGAA---GGACCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCA 182 ||||| || || |||| ||| ||| | || | ||| || |||| |||| Sbjct 3063 GGCCCCCGTGAGGGGGCCTTGGGTCCAAAAAGAGGGGCAGTGCC--CCGCCTCCGATTCA 3006 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAAC-GGCTCCC 241 || ||||||||| |||| ||| ||||||||||||||||| ||||| | ||||||| Sbjct 3005 CGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCGTTTCCGGCTCCC 2946 Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2945 ACTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 2886 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 2885 TCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGT 2826 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2825 AGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 2766 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2765 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 2706 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 2705 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATC 2652 >seq238307 Length=614 Score = 158 bits (174), Expect = 4e-36 Identities = 90/92 (98%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 523 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 582 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCC 98 |||||||||||||||||||||||||||||||| Sbjct 583 GTTTAACAGATGTGCCGCCCCAGCCAAACTCC 614 >seq115161 Length=3092 Score = 107 bits (118), Expect = 6e-21 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 ||||| || ||| ||||||||||||||| |||| | ||||||| | ||||||| Sbjct 1686 TTTTGTTCCACAAGAGATTTCTGTTCTCATTGAGCTCATCTTAGGATAATTGCGTTAGCT 1627 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 ||||||||||||| || ||||||||||||||||| |||||||| || || Sbjct 1626 TTTAACAGATGTGTCGTCCCAGCCAAACTCCCCATCTGACAATATCTTC 1578 >seq222639 Length=1624 Score = 86.0 bits (94), Expect = 2e-14 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTG-CGCCGAAACGG-CTCCCA 242 || || |||||| || | ||| | |||| |||||||| || | | | | || ||| Sbjct 208 GAATACGTAAAATAATGTTAATGCTAGTAGTATTTCATTTTTCACTGTCTCCAACTTCCA 149 Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 ||||| ||||||| ||||||||||||| |||||| ||||||||||||||||| || || Sbjct 148 CTTATACTACACCATTCAAGTCATTTCATAAAGTCATACTAGAGTCAAGCTCAATAGAGT 89 Query 303 C 303 | Sbjct 88 C 88 >seq212791 Length=233936 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 196930 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 196871 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| |||||||||||| | |||| Sbjct 196870 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 196825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1631300244224