Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq203717 376 8e-102 seq208242 219 1e-54 seq162856 219 1e-54 seq163170 197 5e-48 seq205930 196 2e-47 seq212791 192 2e-46 seq224050 170 7e-40 seq174642 154 5e-35 seq174641 102 3e-19 >seq203717 Length=542 Score = 376 bits (416), Expect = 8e-102 Identities = 370/473 (78%), Gaps = 6/473 (1%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| |||||||||| |||||||||| ||| || ||||| | |||||| || Sbjct 73 TCGACTTGTAGGTCTCGCAGTTAAGCTCCCTTCTGCCTTTGCACTCGACGGCTGATTTCC 132 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || ||| ||||||||||||||||||||||||||||| ||||||||| | |||||||||| Sbjct 133 AAACAGCCTGAGGGAACCTTTGGGCGCCTCCGTTACTCTTTGGGAGG-CGACCGCCCCAG 191 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | ||||| ||| || |||| |||||| | || ||||| || || ||||||| ||| Sbjct 192 TCAAACTGCCCGCCTGGCAATGTCCCGGATCCGGATCACGGACCTCGGTTAGAACTCCGG 251 Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCAC--AACCACTAGCGTGGCCGCATCATA 238 ||| || || ||||||||||| | |||||| |||| ||||| | || ||| | Sbjct 252 TACTGTAAGGGTGGTATTTCACCGGTCTCTCCACCGAACC--TAGCGGCCCGGCTTCAAA 309 Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTC 298 | ||||||||||||||||||| ||||||||||| || | ||| | | ||| ||||| Sbjct 310 GCCTCCCACCTATCCTACACATACCGCACCGAAGTTCACTGCCAGGGTGCAGTAAAGGTG 369 Query 299 C-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCAC 357 | | |||||||| |||| | ||| | | | ||||||| || | || || ||| | Sbjct 370 CACAGGGTCTTTCCGTCTAGTTGCGGGTAGCTGGCATCTTCACCAGCGCTACAGATTCGC 429 Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTAC 417 | ||| | || |||||||| | |||||||||||||||||||||||||||||||| Sbjct 430 TGAGCCCCTCGTGGAGACAGCGCCCAAATCGTTACGCCATTCGTGCAGGTCGGAACTTAC 489 Query 418 CCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470 ||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 490 CCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTAC 542 >seq208242 Length=245 Score = 219 bits (242), Expect = 1e-54 Identities = 192/238 (81%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 234 TCATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGA 293 ||| || ||||||||||| |||| || | ||||| || ||| | | ||| |||||| | Sbjct 238 TCACAGGCTCCCACCTATGCTACGCATGCAGCACCAAAATCCAGTGCTAAGGTATAGTAA 179 Query 294 AGGTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAAT 352 |||| | |||||||||| ||||| || ||| | | | || |||| || | || |||| Sbjct 178 AGGTGCACGGGGTCTTTCCGTCCCGCAGCGGGTACCCGGCGTCTTCACCGGAACCACAAT 119 Query 353 TTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAA 412 ||| | | || | ||| |||||||| ||| |||||||||||||||| |||||||||||| Sbjct 118 TTCGCTGAGCATTTGGCCGAGACAGCGGGGCAGTCGTTACGCCATTCATGCAGGTCGGAA 59 Query 413 CTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 58 CTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTAC 1 >seq162856 Length=764 Score = 219 bits (242), Expect = 1e-54 Identities = 309/423 (73%), Gaps = 16/423 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| ||||| |||||||||| ||| ||| |||||||| | |||||| || Sbjct 159 TCGACTTGTTTGTCTCACAGTCAAGCTGGCTTATGCGTTTACACTCTACGGCTGATTTCC 218 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || ||| ||||| |||||| | |||||||||||||||||||||| ||| |||||||||| Sbjct 219 AAACAGCCTGAGCCAACCTTCGAGCGCCTCCGTTACATTTTGGGA-GGCGACCGCCCCAG 277 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCC-- 178 | ||||||||| || | | |||||| || ||| | || |||||||| ||| Sbjct 278 TCAAACTACCCGCCTGATAGTGTCCCTCCACCGGATGACGGCGGTAGGTTAGA-GTCCAG 336 Query 179 ACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAA---CCACTAGCGTGGCCGCATC 235 || | | || ||||||| ||| | | |||| | | ||| ||| | || || Sbjct 337 ACAAACG-AAGGGTGGTATCTCACCGTTGGCTCCCCGAAGCCCAAAAGCCT---CGGTTC 392 Query 236 ATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTGA 293 | || |||||||||||||| | || || ||||| ||| || |||| | |||| | Sbjct 393 AAAGCCTCCCACCTATCCTGCGCATCGTTTGC-CCGAA-CCCACTATCAAGTTGTAGTCA 450 Query 294 AGGT-CCCGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAAT 352 |||| | |||||||||| |||| | ||| ||||| ||||||| || ||||| ||| Sbjct 451 AGGTGCACGGGGTCTTTCCGTCTAGATGCGGGAAACCGGCATCTTCACCGGTACTACAAG 510 Query 353 TTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAA 412 ||| | | ||| | ||| ||||||| ||||||||||||||||||||||||||| Sbjct 511 TTCGCTGTGCCGCTCGTTAAGACAGCTCCCAGATCGTTACGCCATTCGTGCAGGTCGGAA 570 Query 413 CTT 415 ||| Sbjct 571 CTT 573 >seq163170 Length=29127 Score = 197 bits (218), Expect = 5e-48 Identities = 393/570 (69%), Gaps = 23/570 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 21873 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 21932 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 21933 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 21991 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 21992 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 22051 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCAT 234 | | ||||||||||| ||| | | ||| | | || || | |||| | Sbjct 22052 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAG-GAGGCCT--T 22108 Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292 | | | || ||||||| || | || || || | || |||||| ||| | | |||| Sbjct 22109 CTTCGCCTTCCACCTAAGCTGCGCAGGAAAAGCCC--AAAGCCAATCCCAGGGAACAGTG 22166 Query 293 AAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAA 351 ||| | | |||||||| |||| | || | | ||||||| || | | | Sbjct 22167 AAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTA 22226 Query 352 TTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGG 410 |||||||| |||| | ||||||| | || |||||||||| ||||||| |||||| Sbjct 22227 TTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGG 22285 Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470 |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 22286 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 22345 Query 471 TGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTT 530 |||||||| | ||| ||| || || | | |||| | ||| ||||| Sbjct 22346 CGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTT 22399 Query 531 CCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 || |||| ||||||||||||| || |||| Sbjct 22400 CCGGCACTGGGCAGGCGTCAGCCCCCATAC 22429 >seq205930 Length=511 Score = 196 bits (216), Expect = 2e-47 Identities = 262/358 (73%), Gaps = 5/358 (1%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| ||||||||||||| || ||| ||| || |||||| || |||||| || Sbjct 156 TCGACTTGTCAGTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCAACAGCTGATTTCC 215 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||||| ||||| ||| | | ||||||||||||| ||||||| ||| |||||||||| Sbjct 216 GACCAGCCTGAGCCCACCATCGCGCGCCTCCGTTACTCTTTGGGA-GGCGACCGCCCCAG 274 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAG-ATCATGGGCCAAGGTTAGATATC-C 178 | ||||||||| ||| ||| ||||| | ||| | ||| || | |||||||| || Sbjct 275 TCAAACTACCCGCCATGCAGGGTCCCGACCCCGGTTTCACGGAGCGCGGTTAGATGTCAG 334 Query 179 ACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238 | || | || | |||||||||| | ||||||| |||||| ||| ||| | Sbjct 335 AGAACAG-AAGGGCGGTATTTCAAGGCTGCCTCCACACTGGCTAGCGCCAGCGCTTCAAA 393 Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGT- 297 | ||||| ||||||||||||| | || ||| ||| | | ||||| |||| ||||| Sbjct 394 GGCTCCCGCCTATCCTACACATCCACTCCCTAATACCACTGCAAAGCTGTAGTAAAGGTG 453 Query 298 CCCGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTC 355 | |||||||||| |||| ||||| | | | ||||||| || | | | ||||||| Sbjct 454 CACGGGGTCTTTCCGTCTAACCGCGGGTACCCCGCATCTTCACGGGGAATTCAATTTC 511 >seq212791 Length=233936 Score = 192 bits (212), Expect = 2e-46 Identities = 342/495 (69%), Gaps = 38/495 (8%) Strand=Plus/Minus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||| | | |||||||||| ||| ||||| || ||||||||| ||||||||||||| Sbjct 197217 ACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAGATAAACTACCCACCT 197159 Query 136 GGCACTGTCCC--CAACCCAGA--TCATGG-GCCAAGGTTAGATATCCACTACGGTCAGA 190 ||| |||||| | ||| || || || || |||||| |||| | ||| Sbjct 197158 CGCAGTGTCCCGCCCCCCCCGAATTCTCGGTGCGGCGGTTAGGCATCCTTAGACGAAAGA 197099 Query 191 GTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTA 250 ||||| ||||| | | || | | ||| | || | ||||||||| Sbjct 197098 GTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCACC------TCCCACCTA 197054 Query 251 TCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTT 309 ||||||||| | | || || | | |||||||||| ||||| | ||||||||| Sbjct 197053 TCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCACGGGGTCTTA 196994 Query 310 TCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGT 369 |||| |||| | | ||||||| || | | ||||||||||||| | || Sbjct 196993 CCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTC 196934 Query 370 TGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAAT 429 |||||||| ||| ||||||||| |||||||||||||||| ||||| ||||||||||| Sbjct 196933 GGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAAT 196874 Query 430 TTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGC 489 ||||||||||||||| |||| |||||| ||||||||||| |||||||| ||| || Sbjct 196873 TTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGC 196814 Query 490 CTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTC 549 | | | ||| | |||| || || ||||||||||||||||| ||| Sbjct 196813 TT---ATAACACTT-------------CTCCTTTTGACTTTCCAGCACCGGGCAGGTGTC 196770 Query 550 AGTCCGTATACCTCG 564 || | ||||| ||| Sbjct 196769 AGACTCTATACATCG 196755 >seq224050 Length=624 Score = 170 bits (188), Expect = 7e-40 Identities = 185/243 (76%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 240 TCTCCCACCTATCCTACACA---AACCGCACCGAATGCC-AATACCAAGCTATAGTGAAG 295 |||||||||||| |||| || |||| || | ||| |||| |||||| ||| ||| Sbjct 3 TCTCCCACCTATGCTACGCAGTTAACC----CGTACGCCCAATATCAAGCTGCAGTAAAG 58 Query 296 GTCCCGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTC 355 | | |||||||||||||| || || | ||| ||||||| || ||| || | |||| Sbjct 59 CTTCTGGGGTCTTTTCGTCTAGCTGCAGGTAACCGGCATCTTCACCGGTATTGTATTTTC 118 Query 356 ACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTT 415 |||| || || | ||||||| ||||||||| |||||||||| ||| |||||| Sbjct 119 ACCGAGCTAGTCCTCGAGACAGTTCCCCAGTCGTTACACCATTCGTGCGCGTCAGAACTT 178 Query 416 ACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGG 475 ||||||||||||||||||||||||||||| ||||||||||| ||| | || || ||| Sbjct 179 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGACATTCACGGGGA 238 Query 476 CTT 478 ||| Sbjct 239 CTT 241 >seq174642 Length=258 Score = 154 bits (170), Expect = 5e-35 Identities = 192/259 (74%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 154 GATCATGGGCCAAGGTTAGATATCCACTACGGTCA-GAGTGGTATTTCAACAACGACTCC 212 ||| | ||||| |||||||| ||| || || | ||||||||||||| | |||| Sbjct 1 GATTACGGGCCGCGGTTAGATTGCCAG-ACACACAAGGGTGGTATTTCAACGTTGGCTCC 59 Query 213 ACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTATCCTACACAAACCGCACCGAAT 272 || |||||||| | || ||| || ||||||||||||||||||| | ||||| Sbjct 60 ACCGAGACTAGCGTCCCAGCTTCAAAGCCTCCCACCTATCCTACACATGCAAGTCCGAAA 119 Query 273 GCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAG 331 ||| | | ||||| ||| ||||| | |||||||||| |||| | ||| | | | | Sbjct 120 ACCAGTGCGAAGCTGCAGTAAAGGTGCACGGGGTCTTTCCGTCTAGTTGCGGGTAGCCGG 179 Query 332 CATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTA 391 |||||| || | | | ||||||| | | | | ||||||||||||| ||| |||||||| Sbjct 180 CATCTTCACCGGCATTTCAATTTCGCTGAGTCCGTGGTTGAGACAGTGGGGAAGTCGTTA 239 Query 392 CGCCATTCGTGCAGGTCGG 410 ||||||||||||||||||| Sbjct 240 CGCCATTCGTGCAGGTCGG 258 >seq174641 Length=359 Score = 102 bits (112), Expect = 3e-19 Identities = 96/121 (79%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| ||||| ||||||||| | ||| ||| || ||||| | ||| || || Sbjct 240 TCGACTTGTAGGTCTCACAGTCAAGCCCACTTATGCCTTTGCACTCTACGGCTGGTTTCC 299 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || ||| ||||| | ||||||| |||||||||||| ||| ||| ||| |||||||||| Sbjct 300 AATCAGCCTGAGTGGACCTTTGTACGCCTCCGTTACTGTTTAGGA-GGCGACCGCCCCAG 358 Query 121 T 121 | Sbjct 359 T 359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1698339980288