Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= AAMG01002207.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
seq203717 376 8e-102
seq208242 219 1e-54
seq162856 219 1e-54
seq163170 197 5e-48
seq205930 196 2e-47
seq212791 192 2e-46
seq224050 170 7e-40
seq174642 154 5e-35
seq174641 102 3e-19
>seq203717
Length=542
Score = 376 bits (416), Expect = 8e-102
Identities = 370/473 (78%), Gaps = 6/473 (1%)
Strand=Plus/Plus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
|||||||||| |||||||||| |||||||||| ||| || ||||| | |||||| ||
Sbjct 73 TCGACTTGTAGGTCTCGCAGTTAAGCTCCCTTCTGCCTTTGCACTCGACGGCTGATTTCC 132
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
|| ||| ||||||||||||||||||||||||||||| ||||||||| | ||||||||||
Sbjct 133 AAACAGCCTGAGGGAACCTTTGGGCGCCTCCGTTACTCTTTGGGAGG-CGACCGCCCCAG 191
Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180
| ||||| ||| || |||| |||||| | || ||||| || || ||||||| |||
Sbjct 192 TCAAACTGCCCGCCTGGCAATGTCCCGGATCCGGATCACGGACCTCGGTTAGAACTCCGG 251
Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCAC--AACCACTAGCGTGGCCGCATCATA 238
||| || || ||||||||||| | |||||| |||| ||||| | || ||| |
Sbjct 252 TACTGTAAGGGTGGTATTTCACCGGTCTCTCCACCGAACC--TAGCGGCCCGGCTTCAAA 309
Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTC 298
| ||||||||||||||||||| ||||||||||| || | ||| | | ||| |||||
Sbjct 310 GCCTCCCACCTATCCTACACATACCGCACCGAAGTTCACTGCCAGGGTGCAGTAAAGGTG 369
Query 299 C-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCAC 357
| | |||||||| |||| | ||| | | | ||||||| || | || || ||| |
Sbjct 370 CACAGGGTCTTTCCGTCTAGTTGCGGGTAGCTGGCATCTTCACCAGCGCTACAGATTCGC 429
Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTAC 417
| ||| | || |||||||| | ||||||||||||||||||||||||||||||||
Sbjct 430 TGAGCCCCTCGTGGAGACAGCGCCCAAATCGTTACGCCATTCGTGCAGGTCGGAACTTAC 489
Query 418 CCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470
||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 490 CCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTAC 542
>seq208242
Length=245
Score = 219 bits (242), Expect = 1e-54
Identities = 192/238 (81%), Gaps = 1/238 (0%)
Strand=Plus/Minus
Query 234 TCATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGA 293
||| || ||||||||||| |||| || | ||||| || ||| | | ||| |||||| |
Sbjct 238 TCACAGGCTCCCACCTATGCTACGCATGCAGCACCAAAATCCAGTGCTAAGGTATAGTAA 179
Query 294 AGGTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAAT 352
|||| | |||||||||| ||||| || ||| | | | || |||| || | || ||||
Sbjct 178 AGGTGCACGGGGTCTTTCCGTCCCGCAGCGGGTACCCGGCGTCTTCACCGGAACCACAAT 119
Query 353 TTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAA 412
||| | | || | ||| |||||||| ||| |||||||||||||||| ||||||||||||
Sbjct 118 TTCGCTGAGCATTTGGCCGAGACAGCGGGGCAGTCGTTACGCCATTCATGCAGGTCGGAA 59
Query 413 CTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 58 CTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTAC 1
>seq162856
Length=764
Score = 219 bits (242), Expect = 1e-54
Identities = 309/423 (73%), Gaps = 16/423 (4%)
Strand=Plus/Plus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
||||||||| ||||| |||||||||| ||| ||| |||||||| | |||||| ||
Sbjct 159 TCGACTTGTTTGTCTCACAGTCAAGCTGGCTTATGCGTTTACACTCTACGGCTGATTTCC 218
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
|| ||| ||||| |||||| | |||||||||||||||||||||| ||| ||||||||||
Sbjct 219 AAACAGCCTGAGCCAACCTTCGAGCGCCTCCGTTACATTTTGGGA-GGCGACCGCCCCAG 277
Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCC-- 178
| ||||||||| || | | |||||| || ||| | || |||||||| |||
Sbjct 278 TCAAACTACCCGCCTGATAGTGTCCCTCCACCGGATGACGGCGGTAGGTTAGA-GTCCAG 336
Query 179 ACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAA---CCACTAGCGTGGCCGCATC 235
|| | | || ||||||| ||| | | |||| | | ||| ||| | || ||
Sbjct 337 ACAAACG-AAGGGTGGTATCTCACCGTTGGCTCCCCGAAGCCCAAAAGCCT---CGGTTC 392
Query 236 ATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTGA 293
| || |||||||||||||| | || || ||||| ||| || |||| | |||| |
Sbjct 393 AAAGCCTCCCACCTATCCTGCGCATCGTTTGC-CCGAA-CCCACTATCAAGTTGTAGTCA 450
Query 294 AGGT-CCCGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAAT 352
|||| | |||||||||| |||| | ||| ||||| ||||||| || ||||| |||
Sbjct 451 AGGTGCACGGGGTCTTTCCGTCTAGATGCGGGAAACCGGCATCTTCACCGGTACTACAAG 510
Query 353 TTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAA 412
||| | | ||| | ||| ||||||| |||||||||||||||||||||||||||
Sbjct 511 TTCGCTGTGCCGCTCGTTAAGACAGCTCCCAGATCGTTACGCCATTCGTGCAGGTCGGAA 570
Query 413 CTT 415
|||
Sbjct 571 CTT 573
>seq163170
Length=29127
Score = 197 bits (218), Expect = 5e-48
Identities = 393/570 (69%), Gaps = 23/570 (4%)
Strand=Plus/Plus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
||||| || |||| |||||||||||||||| ||| || ||||| | || ||
Sbjct 21873 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 21932
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
|| | | |||| |||||||| |||||||||||| |||||||||| | || ||||||
Sbjct 21933 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 21991
Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177
||||| | ||| | |||||||| || || || || |||||||||| ||
Sbjct 21992 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 22051
Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCAT 234
| | ||||||||||| ||| | | ||| | | || || | |||| |
Sbjct 22052 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAG-GAGGCCT--T 22108
Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292
| | | || ||||||| || | || || || | || |||||| ||| | | ||||
Sbjct 22109 CTTCGCCTTCCACCTAAGCTGCGCAGGAAAAGCCC--AAAGCCAATCCCAGGGAACAGTG 22166
Query 293 AAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAA 351
||| | | |||||||| |||| | || | | ||||||| || | | |
Sbjct 22167 AAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTA 22226
Query 352 TTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGG 410
|||||||| |||| | ||||||| | || |||||||||| ||||||| ||||||
Sbjct 22227 TTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGG 22285
Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 22286 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 22345
Query 471 TGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTT 530
|||||||| | ||| ||| || || | | |||| | ||| |||||
Sbjct 22346 CGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTT 22399
Query 531 CCAGCACCGGGCAGGCGTCAGTCCGTATAC 560
|| |||| ||||||||||||| || ||||
Sbjct 22400 CCGGCACTGGGCAGGCGTCAGCCCCCATAC 22429
>seq205930
Length=511
Score = 196 bits (216), Expect = 2e-47
Identities = 262/358 (73%), Gaps = 5/358 (1%)
Strand=Plus/Plus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
||||||||| ||||||||||||| || ||| ||| || |||||| || |||||| ||
Sbjct 156 TCGACTTGTCAGTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCAACAGCTGATTTCC 215
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
||||| ||||| ||| | | ||||||||||||| ||||||| ||| ||||||||||
Sbjct 216 GACCAGCCTGAGCCCACCATCGCGCGCCTCCGTTACTCTTTGGGA-GGCGACCGCCCCAG 274
Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAG-ATCATGGGCCAAGGTTAGATATC-C 178
| ||||||||| ||| ||| ||||| | ||| | ||| || | |||||||| ||
Sbjct 275 TCAAACTACCCGCCATGCAGGGTCCCGACCCCGGTTTCACGGAGCGCGGTTAGATGTCAG 334
Query 179 ACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238
| || | || | |||||||||| | ||||||| |||||| ||| ||| |
Sbjct 335 AGAACAG-AAGGGCGGTATTTCAAGGCTGCCTCCACACTGGCTAGCGCCAGCGCTTCAAA 393
Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGT- 297
| ||||| ||||||||||||| | || ||| ||| | | ||||| |||| |||||
Sbjct 394 GGCTCCCGCCTATCCTACACATCCACTCCCTAATACCACTGCAAAGCTGTAGTAAAGGTG 453
Query 298 CCCGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTC 355
| |||||||||| |||| ||||| | | | ||||||| || | | | |||||||
Sbjct 454 CACGGGGTCTTTCCGTCTAACCGCGGGTACCCCGCATCTTCACGGGGAATTCAATTTC 511
>seq212791
Length=233936
Score = 192 bits (212), Expect = 2e-46
Identities = 342/495 (69%), Gaps = 38/495 (8%)
Strand=Plus/Minus
Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135
||||| | | |||||||||| ||| ||||| || ||||||||| |||||||||||||
Sbjct 197217 ACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAGATAAACTACCCACCT 197159
Query 136 GGCACTGTCCC--CAACCCAGA--TCATGG-GCCAAGGTTAGATATCCACTACGGTCAGA 190
||| |||||| | ||| || || || || |||||| |||| | |||
Sbjct 197158 CGCAGTGTCCCGCCCCCCCCGAATTCTCGGTGCGGCGGTTAGGCATCCTTAGACGAAAGA 197099
Query 191 GTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTA 250
||||| ||||| | | || | | ||| | || | |||||||||
Sbjct 197098 GTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCACC------TCCCACCTA 197054
Query 251 TCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTT 309
||||||||| | | || || | | |||||||||| ||||| | |||||||||
Sbjct 197053 TCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCACGGGGTCTTA 196994
Query 310 TCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGT 369
|||| |||| | | ||||||| || | | ||||||||||||| | ||
Sbjct 196993 CCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTC 196934
Query 370 TGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAAT 429
|||||||| ||| ||||||||| |||||||||||||||| ||||| |||||||||||
Sbjct 196933 GGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAAT 196874
Query 430 TTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGC 489
||||||||||||||| |||| |||||| ||||||||||| |||||||| ||| ||
Sbjct 196873 TTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGC 196814
Query 490 CTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTC 549
| | | ||| | |||| || || ||||||||||||||||| |||
Sbjct 196813 TT---ATAACACTT-------------CTCCTTTTGACTTTCCAGCACCGGGCAGGTGTC 196770
Query 550 AGTCCGTATACCTCG 564
|| | ||||| |||
Sbjct 196769 AGACTCTATACATCG 196755
>seq224050
Length=624
Score = 170 bits (188), Expect = 7e-40
Identities = 185/243 (76%), Gaps = 8/243 (3%)
Strand=Plus/Plus
Query 240 TCTCCCACCTATCCTACACA---AACCGCACCGAATGCC-AATACCAAGCTATAGTGAAG 295
|||||||||||| |||| || |||| || | ||| |||| |||||| ||| |||
Sbjct 3 TCTCCCACCTATGCTACGCAGTTAACC----CGTACGCCCAATATCAAGCTGCAGTAAAG 58
Query 296 GTCCCGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTC 355
| | |||||||||||||| || || | ||| ||||||| || ||| || | ||||
Sbjct 59 CTTCTGGGGTCTTTTCGTCTAGCTGCAGGTAACCGGCATCTTCACCGGTATTGTATTTTC 118
Query 356 ACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTT 415
|||| || || | ||||||| ||||||||| |||||||||| ||| ||||||
Sbjct 119 ACCGAGCTAGTCCTCGAGACAGTTCCCCAGTCGTTACACCATTCGTGCGCGTCAGAACTT 178
Query 416 ACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGG 475
||||||||||||||||||||||||||||| ||||||||||| ||| | || || |||
Sbjct 179 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGACATTCACGGGGA 238
Query 476 CTT 478
|||
Sbjct 239 CTT 241
>seq174642
Length=258
Score = 154 bits (170), Expect = 5e-35
Identities = 192/259 (74%), Gaps = 3/259 (1%)
Strand=Plus/Plus
Query 154 GATCATGGGCCAAGGTTAGATATCCACTACGGTCA-GAGTGGTATTTCAACAACGACTCC 212
||| | ||||| |||||||| ||| || || | ||||||||||||| | ||||
Sbjct 1 GATTACGGGCCGCGGTTAGATTGCCAG-ACACACAAGGGTGGTATTTCAACGTTGGCTCC 59
Query 213 ACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTATCCTACACAAACCGCACCGAAT 272
|| |||||||| | || ||| || ||||||||||||||||||| | |||||
Sbjct 60 ACCGAGACTAGCGTCCCAGCTTCAAAGCCTCCCACCTATCCTACACATGCAAGTCCGAAA 119
Query 273 GCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAG 331
||| | | ||||| ||| ||||| | |||||||||| |||| | ||| | | | |
Sbjct 120 ACCAGTGCGAAGCTGCAGTAAAGGTGCACGGGGTCTTTCCGTCTAGTTGCGGGTAGCCGG 179
Query 332 CATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTA 391
|||||| || | | | ||||||| | | | | ||||||||||||| ||| ||||||||
Sbjct 180 CATCTTCACCGGCATTTCAATTTCGCTGAGTCCGTGGTTGAGACAGTGGGGAAGTCGTTA 239
Query 392 CGCCATTCGTGCAGGTCGG 410
|||||||||||||||||||
Sbjct 240 CGCCATTCGTGCAGGTCGG 258
>seq174641
Length=359
Score = 102 bits (112), Expect = 3e-19
Identities = 96/121 (79%), Gaps = 1/121 (1%)
Strand=Plus/Plus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
|||||||||| ||||| ||||||||| | ||| ||| || ||||| | ||| || ||
Sbjct 240 TCGACTTGTAGGTCTCACAGTCAAGCCCACTTATGCCTTTGCACTCTACGGCTGGTTTCC 299
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
|| ||| ||||| | ||||||| |||||||||||| ||| ||| ||| ||||||||||
Sbjct 300 AATCAGCCTGAGTGGACCTTTGTACGCCTCCGTTACTGTTTAGGA-GGCGACCGCCCCAG 358
Query 121 T 121
|
Sbjct 359 T 359
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1698339980288
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