Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq226305 239 7e-61 seq142468 105 1e-20 seq118331 105 1e-20 >seq226305 Length=2942 Score = 239 bits (264), Expect = 7e-61 Identities = 227/283 (80%), Gaps = 8/283 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||||| ||||||||||||||||||||||||| ||||| | Sbjct 2885 GTACGAGAGGAACCGTTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACAAGGCATT 2828 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct 2827 GCCGCGACGCTACCATCTGCCGGATTATGGCTGAACGCCTCTAAGTCAGAATCCGTGCCG 2768 Query 121 GAACGGG--GTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTCGGCCCCG 177 ||||| | | || | ||| |||| ||||||||||||||||||||| ||| |||| || Sbjct 2767 GAACGCGACATTATACACTC--GCACGTCGTAGTCGGATACGAATAGGCCTTTGGCCACG 2710 Query 178 AACCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATT 237 |||| | |||| ||||| || ||| |||||| | ||| || | |||||| Sbjct 2709 CACCTCAACAGGTCGGCAGCGCCCGTGTGACGGAAGAGTTACGCGGGTCGCCGACGGATT 2650 Query 238 GCAATTTCACCATGCGCAGGGA-TAAATCCTTTGCAGACGACC 279 | ||||||||| | || |||| | | ||| |||| |||||| Sbjct 2649 GTCATTTCACCACGGGCGGGGACTGGAACCTCTGCATACGACC 2607 >seq142468 Length=2098 Score = 105 bits (116), Expect = 1e-20 Identities = 100/125 (80%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 1767 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1710 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 1709 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 1650 Query 121 GAACG 125 || || Sbjct 1649 GAGCG 1645 >seq118331 Length=3954 Score = 105 bits (116), Expect = 1e-20 Identities = 100/125 (80%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 3506 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 3563 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 3564 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 3623 Query 121 GAACG 125 || || Sbjct 3624 GAGCG 3628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 817307359232