Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq118330 590 2e-166 seq157409 457 3e-126 seq226305 446 5e-123 seq197617 446 5e-123 seq178311 241 4e-61 seq159714 87.8 5e-15 seq170924 80.6 8e-13 >seq118330 Length=3206 Score = 590 bits (654), Expect = 2e-166 Identities = 444/513 (87%), Gaps = 13/513 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| || | |||||| |||| |||||||||||||||||| Sbjct 1879 GTACTCATTCCAATTACCAGACTCATA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 1821 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1820 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 1761 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 1760 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 1701 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 1700 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCA 1641 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293 | |||| |||||| ||| |||||| |||||||| || |||| | | || | Sbjct 1640 CGGTGGCCTTGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAGAGCCCG 1583 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| ||| ||||| Sbjct 1582 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGGTGCACGTATT 1523 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| |||| || ||| |||||| |||| |||||||| Sbjct 1522 AGCTCTAGAATTACTACGGTTATCCGAGTAGCAA-ATACCATCAAACAAACTATAACTGA 1464 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 1463 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCT 1404 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 1403 TAATCTTTGAGACAAGCATATGACTACTGGCAG 1371 >seq157409 Length=292 Score = 457 bits (506), Expect = 3e-126 Identities = 278/293 (95%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 199 GAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGT 258 |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1 GAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCGCAAGGCCATGCGATTCGA 60 Query 259 TAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATAC 318 |||||| ||||||||||| |||||||||||||| ||||||||| ||||||||||||| Sbjct 61 GGAGTTATCATGAATCACCAGTGAGCCCCGAAGGGCATTGGTTTTTAATCTAATAAATAC 120 Query 319 ACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCA 378 | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ATCCCTTCCGAAGTCGGGATTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCA 180 Query 379 TGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACT 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACA 240 Query 439 GTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATA 491 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATA 292 >seq226305 Length=2942 Score = 446 bits (494), Expect = 5e-123 Identities = 262/271 (97%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 136 CCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACC 195 ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||| Sbjct 1 CCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAGACCATGGTAAGCCACTATCTTACC 60 Query 196 ATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATT 255 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 61 ATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCGCAAGGCCATGCGATT 120 Query 256 CGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAA 315 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 121 CGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCATTGGTTTTTTATCTAATAAA 180 Query 316 TACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTAT 375 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 181 TACACCCCTTCCGAAGTCGAGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTAT 240 Query 376 CCATGTAGTAAGGTACTATCAAATAAACGAT 406 ||| ||| |||||||||||||||||||||| Sbjct 241 CCAGGTA--AAGGTACTATCAAATAAACGAT 269 >seq197617 Length=1112 Score = 446 bits (494), Expect = 5e-123 Identities = 296/323 (92%), Gaps = 4/323 (1%) Strand=Plus/Minus Query 186 CTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGG 245 ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||| Sbjct 1111 CTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGAAGCATCGCCGGCACAAGG 1052 Query 246 CCATGCGATTCGTTAAGTTATTATGAATCACCAA-GGAGCCCCGAAGGGCGTTGGTTTTT 304 |||||||||||| |||||||||||||||||||| ||||| ||| |||||||||||| Sbjct 1051 CCATGCGATTCGAGAAGTTATTATGAATCACCAAGGGAGCGGCGAGCCGCGTTGGTTTTT 992 Query 305 TATCTAATAAATACACCCCTTCC-GAAGTCGGGG-TTTTTAGCATGTATTAGCTCTAGAA 362 |||||||||||||||||||| || |||||||||| || | ||||||||||||||||||| Sbjct 991 TATCTAATAAATACACCCCTCCCAGAAGTCGGGGCTTGATTGCATGTATTAGCTCTAGAA 932 Query 363 TTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGC 422 ||||||| ||||||||||||| ||| ||| ||||||||||| |||||||||||||||||| Sbjct 931 TTACCACAGTTATCCATGTAGCAAGATACCATCAAATAAACTATAACTGATTTAATGAGC 872 Query 423 CATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481 ||||||||||||||| ||| | | ||| |||||||||||||||||||||||||||||||| Sbjct 871 CATTCGCAGTTTCACAGTACAAAGTTGTTTATACTTAGACATGCATGGCTTAATCTTTGA 812 Query 482 GACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||| Sbjct 811 GACAAGCATATGACTACTGGCAG 789 >seq178311 Length=211 Score = 241 bits (266), Expect = 4e-61 Identities = 182/211 (86%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 197 TCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTC 256 ||||||||||||||||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 211 TCGAAAGTTGATAGGGCAGAAATTTGAATGATTCATCGTCGACATAAAGTCATACGATTC 152 Query 257 GTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCG---TTGGTTTTTTATCTAATA 313 | |||||||||||||||||||||| | | | || |||||||||||||||||| Sbjct 151 GAAAAGTTATTATGAATCACCAAGGGAATCGGTTGCCCGATATTGGTTTTTTATCTAATA 92 Query 314 AATACACCCC-TTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGG 371 |||||||||| |||| |||||||| | |||||||||||||||||||||||||||||||| Sbjct 91 AATACACCCCCTTCCAGAAGTCGGAGGCTTTAGCATGTATTAGCTCTAGAATTACCACGG 32 Query 372 TTATCCATGTAGTAAGGTACTATCAAATAAA 402 ||||||| ||||||||||||||||||||||| Sbjct 31 TTATCCAAGTAGTAAGGTACTATCAAATAAA 1 >seq159714 Length=1822 Score = 87.8 bits (96), Expect = 5e-15 Identities = 50/51 (98%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 51 >seq170924 Length=1103 Score = 80.6 bits (88), Expect = 8e-13 Identities = 44/44 (100%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 44 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1506797877248