Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq118330 590 2e-166
seq157409 457 3e-126
seq226305 446 5e-123
seq197617 446 5e-123
seq178311 241 4e-61
seq159714 87.8 5e-15
seq170924 80.6 8e-13
>seq118330
Length=3206
Score = 590 bits (654), Expect = 2e-166
Identities = 444/513 (87%), Gaps = 13/513 (3%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||| |||| || | |||||| |||| ||||||||||||||||||
Sbjct 1879 GTACTCATTCCAATTACCAGACTCATA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 1821
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1820 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 1761
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||
Sbjct 1760 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 1701
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
|||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1700 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCA 1641
Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293
| |||| |||||| ||| |||||| |||||||| || |||| | | || |
Sbjct 1640 CGGTGGCCTTGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAGAGCCCG 1583
Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352
||| | ||||||||||||||| || ||||||| ||||||||||||| ||| |||||
Sbjct 1582 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGGTGCACGTATT 1523
Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412
|||||||||||||| |||||||||| |||| || ||| |||||| |||| ||||||||
Sbjct 1522 AGCTCTAGAATTACTACGGTTATCCGAGTAGCAA-ATACCATCAAACAAACTATAACTGA 1464
Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471
||||||||||||||||||||||||| || | ||| | | ||||||| ||||||||||||
Sbjct 1463 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCT 1404
Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||||||||||||
Sbjct 1403 TAATCTTTGAGACAAGCATATGACTACTGGCAG 1371
>seq157409
Length=292
Score = 457 bits (506), Expect = 3e-126
Identities = 278/293 (95%), Gaps = 1/293 (0%)
Strand=Plus/Plus
Query 199 GAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGT 258
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 GAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCGCAAGGCCATGCGATTCGA 60
Query 259 TAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATAC 318
|||||| ||||||||||| |||||||||||||| ||||||||| |||||||||||||
Sbjct 61 GGAGTTATCATGAATCACCAGTGAGCCCCGAAGGGCATTGGTTTTTAATCTAATAAATAC 120
Query 319 ACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCA 378
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATCCCTTCCGAAGTCGGGATTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCA 180
Query 379 TGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACT 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACA 240
Query 439 GTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATA 491
||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATA 292
>seq226305
Length=2942
Score = 446 bits (494), Expect = 5e-123
Identities = 262/271 (97%), Gaps = 2/271 (1%)
Strand=Plus/Plus
Query 136 CCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACC 195
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||
Sbjct 1 CCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAGACCATGGTAAGCCACTATCTTACC 60
Query 196 ATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATT 255
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 ATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCGCAAGGCCATGCGATT 120
Query 256 CGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAA 315
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 CGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCATTGGTTTTTTATCTAATAAA 180
Query 316 TACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTAT 375
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TACACCCCTTCCGAAGTCGAGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTAT 240
Query 376 CCATGTAGTAAGGTACTATCAAATAAACGAT 406
||| ||| ||||||||||||||||||||||
Sbjct 241 CCAGGTA--AAGGTACTATCAAATAAACGAT 269
>seq197617
Length=1112
Score = 446 bits (494), Expect = 5e-123
Identities = 296/323 (92%), Gaps = 4/323 (1%)
Strand=Plus/Minus
Query 186 CTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGG 245
||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||
Sbjct 1111 CTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGAAGCATCGCCGGCACAAGG 1052
Query 246 CCATGCGATTCGTTAAGTTATTATGAATCACCAA-GGAGCCCCGAAGGGCGTTGGTTTTT 304
|||||||||||| |||||||||||||||||||| ||||| ||| ||||||||||||
Sbjct 1051 CCATGCGATTCGAGAAGTTATTATGAATCACCAAGGGAGCGGCGAGCCGCGTTGGTTTTT 992
Query 305 TATCTAATAAATACACCCCTTCC-GAAGTCGGGG-TTTTTAGCATGTATTAGCTCTAGAA 362
|||||||||||||||||||| || |||||||||| || | |||||||||||||||||||
Sbjct 991 TATCTAATAAATACACCCCTCCCAGAAGTCGGGGCTTGATTGCATGTATTAGCTCTAGAA 932
Query 363 TTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGC 422
||||||| ||||||||||||| ||| ||| ||||||||||| ||||||||||||||||||
Sbjct 931 TTACCACAGTTATCCATGTAGCAAGATACCATCAAATAAACTATAACTGATTTAATGAGC 872
Query 423 CATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481
||||||||||||||| ||| | | ||| ||||||||||||||||||||||||||||||||
Sbjct 871 CATTCGCAGTTTCACAGTACAAAGTTGTTTATACTTAGACATGCATGGCTTAATCTTTGA 812
Query 482 GACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||
Sbjct 811 GACAAGCATATGACTACTGGCAG 789
>seq178311
Length=211
Score = 241 bits (266), Expect = 4e-61
Identities = 182/211 (86%), Gaps = 5/211 (2%)
Strand=Plus/Minus
Query 197 TCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTC 256
||||||||||||||||||||||||||||||| ||||| || | || | ||| ||||||
Sbjct 211 TCGAAAGTTGATAGGGCAGAAATTTGAATGATTCATCGTCGACATAAAGTCATACGATTC 152
Query 257 GTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCG---TTGGTTTTTTATCTAATA 313
| |||||||||||||||||||||| | | | || ||||||||||||||||||
Sbjct 151 GAAAAGTTATTATGAATCACCAAGGGAATCGGTTGCCCGATATTGGTTTTTTATCTAATA 92
Query 314 AATACACCCC-TTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGG 371
|||||||||| |||| |||||||| | ||||||||||||||||||||||||||||||||
Sbjct 91 AATACACCCCCTTCCAGAAGTCGGAGGCTTTAGCATGTATTAGCTCTAGAATTACCACGG 32
Query 372 TTATCCATGTAGTAAGGTACTATCAAATAAA 402
||||||| |||||||||||||||||||||||
Sbjct 31 TTATCCAAGTAGTAAGGTACTATCAAATAAA 1
>seq159714
Length=1822
Score = 87.8 bits (96), Expect = 5e-15
Identities = 50/51 (98%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 51
>seq170924
Length=1103
Score = 80.6 bits (88), Expect = 8e-13
Identities = 44/44 (100%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 44
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1506797877248
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |