Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq89547 140 3e-28 >seq89547 Length=5293 Score = 140 bits (154), Expect = 3e-28 Identities = 387/581 (67%), Gaps = 17/581 (3%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| || ||||| | |||||| |||||||| || || ||||| || || | Sbjct 3415 TGTTCCCGATTCAGTATCCACAAATTTGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTT 3356 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | ||||| || ||| | || |||| | |||||||| || | || Sbjct 3355 GGACCGCTGAGGAAGTTGATCTTTCGCAAGATCTCCGCCACTGGGAGGCCCTAAC---CG 3299 Query 61184 GTGA--ACAA-CATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCG 61240 ||| | || || ||| | | || ||| | || |||||||| || || ||||| |||| Sbjct 3298 CTGACGAGAAGCACTTCGTCACGCACGTGCTCGCCTTCTTTGCAGCCTCCGACGGCATCG 3239 Query 61241 TCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTT 61300 || ||||| | | | | ||| | |||||| || || | ||||||||| | Sbjct 3238 TCCTCGAGAACCTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAGGCGCGTGCCT 3179 Query 61301 TCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCG 61360 |||||||||||||||| ||||| ||||| ||||||| || |||||| | || | | Sbjct 3178 TCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAG 3119 Query 61361 ATACGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGAC-GAT 61418 | || ||||||| || | | || || | | || | || | ||||||||||| | | Sbjct 3118 AAACTTACATCAAAGACTCCGACGAAAAG-AACCGTCTCTTTCACGCCATCGAGACGGTT 3060 Query 61419 ACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTAC 61478 || ||| | | |||||| ||||| || ||||||||| | | ||| || Sbjct 3059 CCCTGCGTCGCA-AAGAAAGCCACGTGGGCGTTAAATTGGATCGACGG---CTCGGAGAC 3004 Query 61479 ATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGG--TGTATTTTTCAGTGGATCG 61536 |||| || |||| | || ||||| || ||||| | | || |||| ||| Sbjct 3003 TTTTGCGGAGAGATTAATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAG-GGAGTT 2945 Query 61537 TTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAAT 61596 |||| ||| || |||||| | || || || || | ||||| || |||| ||| ||| Sbjct 2944 TTTG-CGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGATTGACGTTCTCAAAT 2886 Query 61597 GAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 |||||||| || || || ||||| | || || ||||| || Sbjct 2885 GAGTTGATCTCGCGAGATGAGGGTCTCCACTGCGATTTCGC 2845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396412439784320