Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq89547 140 3e-28
>seq89547
Length=5293
Score = 140 bits (154), Expect = 3e-28
Identities = 387/581 (67%), Gaps = 17/581 (3%)
Strand=Plus/Minus
Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123
||||||| || ||||| | |||||| |||||||| || || ||||| || || |
Sbjct 3415 TGTTCCCGATTCAGTATCCACAAATTTGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTT 3356
Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183
|||| | ||||| || ||| | || |||| | |||||||| || | ||
Sbjct 3355 GGACCGCTGAGGAAGTTGATCTTTCGCAAGATCTCCGCCACTGGGAGGCCCTAAC---CG 3299
Query 61184 GTGA--ACAA-CATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCG 61240
||| | || || ||| | | || ||| | || |||||||| || || ||||| ||||
Sbjct 3298 CTGACGAGAAGCACTTCGTCACGCACGTGCTCGCCTTCTTTGCAGCCTCCGACGGCATCG 3239
Query 61241 TCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTT 61300
|| ||||| | | | | ||| | |||||| || || | ||||||||| |
Sbjct 3238 TCCTCGAGAACCTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAGGCGCGTGCCT 3179
Query 61301 TCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCG 61360
|||||||||||||||| ||||| ||||| ||||||| || |||||| | || | |
Sbjct 3178 TCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAG 3119
Query 61361 ATACGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGAC-GAT 61418
| || ||||||| || | | || || | | || | || | ||||||||||| | |
Sbjct 3118 AAACTTACATCAAAGACTCCGACGAAAAG-AACCGTCTCTTTCACGCCATCGAGACGGTT 3060
Query 61419 ACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTAC 61478
|| ||| | | |||||| ||||| || ||||||||| | | ||| ||
Sbjct 3059 CCCTGCGTCGCA-AAGAAAGCCACGTGGGCGTTAAATTGGATCGACGG---CTCGGAGAC 3004
Query 61479 ATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGG--TGTATTTTTCAGTGGATCG 61536
|||| || |||| | || ||||| || ||||| | | || |||| |||
Sbjct 3003 TTTTGCGGAGAGATTAATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAG-GGAGTT 2945
Query 61537 TTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAAT 61596
|||| ||| || |||||| | || || || || | ||||| || |||| ||| |||
Sbjct 2944 TTTG-CGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGATTGACGTTCTCAAAT 2886
Query 61597 GAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637
|||||||| || || || ||||| | || || ||||| ||
Sbjct 2885 GAGTTGATCTCGCGAGATGAGGGTCTCCACTGCGATTTCGC 2845
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396412439784320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |